BAC Information

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BAC

Clone NameB6Ng01-214O24
Chromosome2 (Build37)
Map Location 75,150,325 - 75,278,792
singlet/doubletdoublet
Overlap genenone
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
Downstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214O24.bB6Ng01-214O24.g
ACCGA032049GA032050
length1,122810
definitionB6Ng01-214O24.b B6Ng01-214O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,150,325 - 75,151,451)(75,277,985 - 75,278,792)
sequence
gaattctcagtggagagggacatttgagatttggaccaacttctccaaaa
gggaagacagtctacaagtctgacggcatctgtccagtcaaaaggtaacc
cctaaaaatcttcaaaacccgatgccgggctaagtggaaaggttttccac
cagatgtatgcaacagtgccatccagcggctatcgcaataattacaagtg
tatctcatttttcaaatgtaacctgttttataatcatatattcttattgt
tttaaaatttaaaaatcgttaattttaaaattgaggagtatctctgattc
ccctaatccatctgtttctgcaggtgcagaaggggtgatgcctgacctac
acacccggcaataccagaagtttcactaccttccgttggtaaacgcttca
gggaaggctctgcaaccctgaacgtgttttattgtagaacctcactagga
aactcatcagtatttattaaagatgaattaaaagaaggaggaaaaggaaa
aacgggatagtgaagagaatagatgaatgaaaaagaagcaaagggaagag
aggaggaagggacaaagagggcaagaaaagagaaaagagagatgagagac
caggacttcccacctaaccttaccaaactttttcagttgagcttttaatg
ggatactattcccaagaggaaattcaaaaagaaaaccaccttgaaacatc
cttgcttttaattgtactctttcaactgccaggaaattaattaggtaaga
caaaaagaaaattttctaccttaataaaaagaagccaacacccaggaaca
actgtctttgcttgagaacagtgttacgtgtacaaagctgcctacaaagt
gtctcccgcctggctcaggcaagaaactgggacagaagtctgtgatgtta
taccagcctggagtcgtgcatggtcatgtcagtgtcgagtgcaccaggcg
acacagggacatgccaggcaccgctcctccagagagacttgccaggtata
catgttacctctctccctttaggcttcacagactcggcgctttcttccac
cacctgtcttccttaggagttgagagacttctcctctgtggatacaaaca
gtaacccaaccagcagtaaaca
gaattccaatgttgatgtaggtagctctatggatacacaagacgagactg
aggaggcatgctctgttaggttacatttctgctattttggaagggaacat
ttggtcaagagaagaactccaggatattgaaaacagaattttttttttta
aagaaacacacacacacacacacacacacacacacacacacgtgcacata
ttcattttgagtctagtttcccctgcctgcttaagtagtaactacaacaa
ggagataaggtggttgaagtgttaatttagttgattacatgtgatccagg
gaactgtcttgtgtgcagcctattctgaccctttggcttttaatactttc
atatatatatttattgttattattttttgctaacttcttaaatacctttc
ctcctccacaccctatttgctcttcccttgcttttggctgtttaaaatcc
atagtccatgtccctggtctctgctttatcataagctgaaatatagcccc
ccacaaaacaaagtgccacgttgttgcaggcttgccttctcacctcatta
tggtccagcagagcatgatgtcacacttgacccggtaccagcctgcccat
aaatgacacagcctgtttcccctcttacttcctggctcaagcaccgggga
aggggtttaatatgaaattcatgcccgtgatgacagatttaaaagttgct
acaaactctaacagacagcaagtgtggtttggagacatacatgcaacaag
cacagctcttcttgtattctgaagtgatgacattcttcgttttaggagtt
acgttttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75150325_75151451
seq2: B6Ng01-214O24.b_46_1167

seq1  GAATTCTCAGTGGAGAGGGACATTTGAGATTTGGACCAACTTCTCCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTGGAGAGGGACATTTGAGATTTGGACCAACTTCTCCAAAA  50

seq1  GGGAAGACAGTCTACAAGTCTGACGGCATCTGTCCAGTCAAAAGGTAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGACAGTCTACAAGTCTGACGGCATCTGTCCAGTCAAAAGGTAACC  100

seq1  CCTAAAAATCTTCAAAACCCGATGCCGGGCTAAGTGGAAAGGTTTTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAATCTTCAAAACCCGATGCCGGGCTAAGTGGAAAGGTTTTCCAC  150

seq1  CAGATGTATGCAACAGTGCCATCCAGCGGCTATCGCAATAATTACAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTATGCAACAGTGCCATCCAGCGGCTATCGCAATAATTACAAGTG  200

seq1  TATCTCATTTTTCAAATGTAACCTGTTTTATAATCATATATTCTTATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATTTTTCAAATGTAACCTGTTTTATAATCATATATTCTTATTGT  250

seq1  TTTAAAATTTAAAAATCGTTAATTTTAAAATTGAGGAGTATCTCTGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTTAAAAATCGTTAATTTTAAAATTGAGGAGTATCTCTGATTC  300

seq1  CCCTAATCCATCTGTTTCTGCAGGTGCAGAAGGGGTGATGCCTGACCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATCCATCTGTTTCTGCAGGTGCAGAAGGGGTGATGCCTGACCTAC  350

seq1  ACACCCGGCAATACCAGAAGTTTCACTACCTTCCGTTGGTAAACGCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCGGCAATACCAGAAGTTTCACTACCTTCCGTTGGTAAACGCTTCA  400

seq1  GGGAAGGCTCTGCAACCCTGAACGTGTTTTATTGTAGAACCTCACTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCTCTGCAACCCTGAACGTGTTTTATTGTAGAACCTCACTAGGA  450

seq1  AACTCATCAGTATTTATTAAAGATGAATTAAAAGAAGGAGGAAAAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCAGTATTTATTAAAGATGAATTAAAAGAAGGAGGAAAAGGAAA  500

seq1  AACGGGATAGTGAAGAGAATAGATGAATGAAAAAGAAGCAAAGGGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGATAGTGAAGAGAATAGATGAATGAAAAAGAAGCAAAGGGAAGAG  550

seq1  AGGAGGAAGGGACAAAGAGGGCAAGAAAAGAGAAAAGAGAGATGAGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGGGACAAAGAGGGCAAGAAAAGAGAAAAGAGAGATGAGAGAC  600

seq1  CAGGACTTCCCACCTAACCTTACCAAACTTTTTCAGTTGAGCTTTTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTCCCACCTAACCTTACCAAACTTTTTCAGTTGAGCTTTTAATG  650

seq1  GGATACTATTCCCAAGAGGAAATTCAAAAAGAAAACCACCTTGAAACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTATTCCCAAGAGGAAATTCAAAAAGAAAACCACCTTGAAACATC  700

seq1  CTTGCTTTTAATTGTACTCTTTCAACTGCCAGGAAATTAATTAGGTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTTAATTGTACTCTTTCAACTGCCAGGAAATTAATTAGGTAAGA  750

seq1  CAAAAAGAAAATTTTCTACCTTAATAAAAAGAAGCCAACACCCAGGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAAAATTTTCTACCTTAATAAAAAGAAGCCAACACCCAGGAACA  800

seq1  ACTGTCTTTGCTTGAGAACAGTGTTACGTGTACAAAGCTGCCTACAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTTGCTTGAGAACAGTGTTACGTGTACAAAGCTGCCTACAAAGT  850

seq1  GTCTCCCGCCTGGCTCAGGCAAGAAACTGGGACAGAAGTCTGTGATGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCGCCTGGCTCAGGCAAGAAACTGGGACAGAAGTCTGTGATGTTA  900

seq1  TACCAGCCTGGGAGTCGTGCATGGTCATGTCAGTGTCGAGTGCACCAGGC  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCCT-GGAGTCGTGCATGGTCATGTCAGTGTCGAGTGCACCAGGC  949

seq1  GACACAGGGACATGCCAGGCACCGCTCCTCCAGAGAGACTTGCCAGGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGGACATGCCAGGCACCGCTCCTCCAGAGAGACTTGCCAGGTAT  999

seq1  ACATGTTACCTCTCTCCC-TTAGGCTTCACAGACTCGGCGGCCTTCCTCC  1049
      |||||||||||||||||| |||||||||||||||||||||  ||| || |
seq2  ACATGTTACCTCTCTCCCTTTAGGCTTCACAGACTCGGCG--CTTTCTTC  1047

seq1  AACCACCTGTC-TCCTTAGGAAGTTTGAGAGAACTTTCTCCTCTGT-GAT  1097
       |||||||||| |||||||||   ||||||||   ||||||||||| |||
seq2  CACCACCTGTCTTCCTTAGGA--GTTGAGAGA--CTTCTCCTCTGTGGAT  1093

seq1  ACAAACAGTAACCAAACAAAGCAGTAAACA  1127
      ||||||||||||| |||  |||||||||||
seq2  ACAAACAGTAACCCAAC-CAGCAGTAAACA  1122

seq1: chr2_75277985_75278792
seq2: B6Ng01-214O24.g_69_878 (reverse)

seq1  TATATAAACGTAACTCCTTAAACGAAGAATGTCATCACTTCAGAATACAA  50
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATA-AAACGTAACTCCTAAAACGAAGAATGTCATCACTTCAGAATACAA  49

seq1  G-AGAGCTGTGCTTGTTGCATGTATGTCTCCAAACCACACTTGCTGTCTG  99
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTGTGCTTGTTGCATGTATGTCTCCAAACCACACTTGCTGTCTG  99

seq1  TTAGAGTTTGTAGCAACTTTTAAATCTGTCATCAC-GGCATGAATTTCAT  148
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAGAGTTTGTAGCAACTTTTAAATCTGTCATCACGGGCATGAATTTCAT  149

seq1  ATTAAACCCCTTCCCCGGTGCTTGAGCCAGGAAGTAAGAGGGG-AACAGG  197
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTAAACCCCTTCCCCGGTGCTTGAGCCAGGAAGTAAGAGGGGAAACAGG  199

seq1  CTGTGTCATTTATGGGCAGGCTGGTACCGGGTCAAGTGTGACATCATGCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCATTTATGGGCAGGCTGGTACCGGGTCAAGTGTGACATCATGCT  249

seq1  CTGCTGGACCATAATGAGGTGAGAAGGCAAGCCTGCAACAACGTGGCACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGACCATAATGAGGTGAGAAGGCAAGCCTGCAACAACGTGGCACT  299

seq1  TTGTTTTGTGGGGGGCTATATTTCAGCTTATGATAAAGCAGAGACCAGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTGGGGGGCTATATTTCAGCTTATGATAAAGCAGAGACCAGGG  349

seq1  ACATGGACTATGGATTTTAAACAGCCAAAAGCAAGGGAAGAGCAAATAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGACTATGGATTTTAAACAGCCAAAAGCAAGGGAAGAGCAAATAGG  399

seq1  GTGTGGAGGAGGAAAGGTATTTAAGAAGTTAGCAAAAAATAATAACAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGGAGGAAAGGTATTTAAGAAGTTAGCAAAAAATAATAACAATA  449

seq1  AATATATATATGAAAGTATTAAAAGCCAAAGGGTCAGAATAGGCTGCACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATATGAAAGTATTAAAAGCCAAAGGGTCAGAATAGGCTGCACA  499

seq1  CAAGACAGTTCCCTGGATCACATGTAATCAACTAAATTAACACTTCAACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGTTCCCTGGATCACATGTAATCAACTAAATTAACACTTCAACC  549

seq1  ACCTTATCTCCTTGTTGTAGTTACTACTTAAGCAGGCAGGGGAAACTAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATCTCCTTGTTGTAGTTACTACTTAAGCAGGCAGGGGAAACTAGA  599

seq1  CTCAAAATGAATATGTGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATGAATATGTGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  649

seq1  GTGTGTTTCTTTAAAAAAAAAAATTCTGTTTTCAATATCCTGGAGTTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTCTTTAAAAAAAAAAATTCTGTTTTCAATATCCTGGAGTTCTT  699

seq1  CTCTTGACCAAATGTTCCCTTCCAAAATAGCAGAAATGTAACCTAACAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGACCAAATGTTCCCTTCCAAAATAGCAGAAATGTAACCTAACAGA  749

seq1  GCATGCCTCCTCAGTCTCGTCTTGTGTATCCATAGAGCTACCTACATCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTCCTCAGTCTCGTCTTGTGTATCCATAGAGCTACCTACATCAA  799

seq1  CATTGGAATTC  808
      |||||||||||
seq2  CATTGGAATTC  810