BAC Information

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BAC

Clone NameB6Ng01-215C24
Chromosome2 (Build37)
Map Location 143,949,075 - 144,118,336
singlet/doubletdoublet
Overlap geneLOC627160, EG433481, Snx5, 8430406I07Rik
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
Downstream geneOvol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215C24.bB6Ng01-215C24.g
ACCGA032231GA032232
length1,134822
definitionB6Ng01-215C24.b B6Ng01-215C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,117,223 - 144,118,336)(143,949,075 - 143,949,896)
sequence
gaattcaccatcctcctgcctctcctcctgggtgctggtattataggcct
gtcaatattaatcttaaaacaaaccaaaaccaaaccaaaccaaaaaaaac
tgctcttgcagagttgcacgaagcagaatctgatgtaagtggctggttcc
aggaaagggccaagagttcccaggtgccccagagaagatagtgggaaggc
cccgcgccagcagctaggttcccaaagttccctccaagttctcttgacac
agcccctggaaaggcctcctgtgctccctccaccccatccagaagggtag
atctgtgttaccagcgctgtccacacaattgctattttggttttcttctc
tgttctgccggcctgacatttcctcagccagttccaagcccagcgtacca
ttttagctgacgtgggtgagtgtttctcagggacagcagatggatggaat
gacaaatagaaggatggtggggacagctgagaaatgctttttcctgtgct
aggactgttggctgtgcacgtgctcctacgtagtctagacacgcagccgt
gggcgcagccgtgtgtggtaggggacagcctgtgggtgggcttgtttctg
aagcatactcattagcacgctgatgcaataaccaacccattgtattagtc
tgaggtccccaaagctgacctgataatagccatttgtttggtcccaggca
ctatcaaaggaagataaggccacaacaggtggccaaagagcaggtcattg
ctgttggcaccctttagtgactacaggaggaacatggctcaaagctggcc
tggtctgggtcactggctctcagctttcattggttaaagattgtctatgt
gggcaggagagatggctcagcattaagaacatggagctgggtgtggggct
gcatgctttttttgttttgttttgttttttgttttttcaagacagggttt
ctcctgtgtagccctggcctgttctggaacttcaagtttgtagaccaggc
tgggcctcgaactctcagaaaattcctcctggcctctgatttggatttaa
aggcatgcaccaacccacgtcccggcgccacatgccttctaatcctcagc
actgtggaaggccgatggatcttctgtgagtttg
gaattccttaacacgtggaaattggcgcaccctgcactggtggtacctag
cctgttaccgtttcagctgtctattaacaagcatttacttagaatctcat
ctcaacttcccttgaagcaaacattgagacggcgggtgtgtcggagtcta
ctaagctgcttgggctgactttcccaactcttcattccatagctctgttt
ccagcagaattcacttaacaacacgtaacaggacaccgcagtaacagtgg
cttggagaattacagacacagttatttcatgcactaggaatgtggctcag
tttagtgtagctgccagtgacactaagaaccatggttacccccctcctgc
tccctcctatcaaccccacagcaccagcttctgtgtgttggtttaccatc
ttcttgcttatcactcagagtcacaaaagagatgctcatctccagatatc
acagcacatgcaagatcaggggtagaggttcttggagctcactcctctcc
atccgttctgccatttcactgacttcctgccaagttccagctgcctcttc
ctagggctttctcatcacaccacagaagactgtctgcaaatttaggattg
ggaatactaaagtatctgtttctcccaagaggaatccccagccaacgact
gcaaaggtgttggtataatggataatcttgactgtccatctgattggata
tgcctttggaggtgagtttgtggttctaagaaggattaactgagtggcag
caccttctcacagcaatccagaaattaagaggtcctaaggcagggccagg
gccaggggaagtgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144117223_144118336
seq2: B6Ng01-215C24.b_42_1175 (reverse)

seq1  CAAACTCACAG-AGATCCATCTGCC-TCTCCAGTGCTGA-GATTA-AAAG  46
      ||||||||||| ||||||||| ||| ||  ||||||||| ||||| || |
seq2  CAAACTCACAGAAGATCCATCGGCCTTCCACAGTGCTGAGGATTAGAAGG  50

seq1  CATGTGGCGCCGGG-CGTGG--TGGTGCATGCCTTTAATCCCAA--CAGA  91
      |||||||||||||| |||||  ||||||||||||||||  ||||  ||||
seq2  CATGTGGCGCCGGGACGTGGGTTGGTGCATGCCTTTAAATCCAAATCAGA  100

seq1  GG-CAGGAGGA--TTTCT--GAGTTCGAGG-CCAGCCTGGTCTAC-AACT  134
      || ||||||||  |||||  |||||||||| |||||||||||||| ||||
seq2  GGCCAGGAGGAATTTTCTGAGAGTTCGAGGCCCAGCCTGGTCTACAAACT  150

seq1  TG-AGTTCCAGGACA-GCCAGGGCTACACA-GAGAAACCCTGTCTTG-AA  180
      || |||||||| ||| |||||||||||||| |||||||||||||||| ||
seq2  TGAAGTTCCAGAACAGGCCAGGGCTACACAGGAGAAACCCTGTCTTGAAA  200

seq1  AAACAAAAAACAAAACAAAACAAAAAAAGCATGCAGCCCCACACCCAGCT  230
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACAAAACAAAACAAAAAAAGCATGCAGCCCCACACCCAGCT  250

seq1  CCATGTTCTTAATGCTGAGCCATCTCTCCTGCCCACATAGACAATCTTTA  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCTTAATGCTGAGCCATCTCTCCTGCCCACATAGACAATCTTTA  300

seq1  ACCAATGAAAGCTGAGAGCCAGTGACCCAGACCAGGCCAGCTTTGAGCCA  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGAAAGCTGAGAGCCAGTGACCCAGACCAGGCCAGCTTTGAGCCA  350

seq1  TGTTCCTCCTGTAGTCACTAAAGGGTGCCAACAGCAATGACCTGCTCTTT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCTGTAGTCACTAAAGGGTGCCAACAGCAATGACCTGCTCTTT  400

seq1  GGCCACCTGTTGTGGCCTTATCTTCCTTTGATAGTGCCTGGGACCAAACA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCTGTTGTGGCCTTATCTTCCTTTGATAGTGCCTGGGACCAAACA  450

seq1  AATGGCTATTATCAGGTCAGCTTTGGGGACCTCAGACTAATACAATGGGT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTATTATCAGGTCAGCTTTGGGGACCTCAGACTAATACAATGGGT  500

seq1  TGGTTATTGCATCAGCGTGCTAATGAGTATGCTTCAGAAACAAGCCCACC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATTGCATCAGCGTGCTAATGAGTATGCTTCAGAAACAAGCCCACC  550

seq1  CACAGGCTGTCCCCTACCACACACGGCTGCGCCCACGGCTGCGTGTCTAG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTGTCCCCTACCACACACGGCTGCGCCCACGGCTGCGTGTCTAG  600

seq1  ACTACGTAGGAGCACGTGCACAGCCAACAGTCCTAGCACAGGAAAAAGCA  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGTAGGAGCACGTGCACAGCCAACAGTCCTAGCACAGGAAAAAGCA  650

seq1  TTTCTCAGCTGTCCCCACCATCCTTCTATTTGTCATTCCATCCATCTGCT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGCTGTCCCCACCATCCTTCTATTTGTCATTCCATCCATCTGCT  700

seq1  GTCCCTGAGAAACACTCACCCACGTCAGCTAAAATGGTACGCTGGGCTTG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGAGAAACACTCACCCACGTCAGCTAAAATGGTACGCTGGGCTTG  750

seq1  GAACTGGCTGAGGAAATGTCAGGCCGGCAGAACAGAGAAGAAAACCAAAA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCTGAGGAAATGTCAGGCCGGCAGAACAGAGAAGAAAACCAAAA  800

seq1  TAGCAATTGTGTGGACAGCGCTGGTAACACAGATCTACCCTTCTGGATGG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATTGTGTGGACAGCGCTGGTAACACAGATCTACCCTTCTGGATGG  850

seq1  GGTGGAGGGAGCACAGGAGGCCTTTCCAGGGGCTGTGTCAAGAGAACTTG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGGAGCACAGGAGGCCTTTCCAGGGGCTGTGTCAAGAGAACTTG  900

seq1  GAGGGAACTTTGGGAACCTAGCTGCTGGCGCGGGGCCTTCCCACTATCTT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACTTTGGGAACCTAGCTGCTGGCGCGGGGCCTTCCCACTATCTT  950

seq1  CTCTGGGGCACCTGGGAACTCTTGGCCCTTTCCTGGAACCAGCCACTTAC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGCACCTGGGAACTCTTGGCCCTTTCCTGGAACCAGCCACTTAC  1000

seq1  ATCAGATTCTGCTTCGTGCAACTCTGCAAGAGCAGTTTTTTTTGGTTTGG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTCTGCTTCGTGCAACTCTGCAAGAGCAGTTTTTTTTGGTTTGG  1050

seq1  TTTGGTTTTGGTTTGTTTTAAGATTAATATTGACAGGCCTATAATACCAG  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTGGTTTGTTTTAAGATTAATATTGACAGGCCTATAATACCAG  1100

seq1  CACCCAGGAGGAGAGGCAGGAGGATGGTGAATTC  1114
      ||||||||||||||||||||||||||||||||||
seq2  CACCCAGGAGGAGAGGCAGGAGGATGGTGAATTC  1134

seq1: chr2_143949075_143949896
seq2: B6Ng01-215C24.g_64_885

seq1  GAATTCCTTAACACGTGGAAATTGGCGCACCCTGCACTGGTGGTACCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAACACGTGGAAATTGGCGCACCCTGCACTGGTGGTACCTAG  50

seq1  CCTGTTACCGTTTCAGCTGTCTATTAACAAGCATTTACTTAGAATCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTACCGTTTCAGCTGTCTATTAACAAGCATTTACTTAGAATCTCAT  100

seq1  CTCAACTTCCCTTGAAGCAAACATTGAGACGGCGGGTGTGTCGGAGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTCCCTTGAAGCAAACATTGAGACGGCGGGTGTGTCGGAGTCTA  150

seq1  CTAAGCTGCTTGGGCTGACTTTCCCAACTCTTCATTCCATAGCTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTGCTTGGGCTGACTTTCCCAACTCTTCATTCCATAGCTCTGTTT  200

seq1  CCAGCAGAATTCACTTAACAACACGTAACAGGACACCGCAGTAACAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAATTCACTTAACAACACGTAACAGGACACCGCAGTAACAGTGG  250

seq1  CTTGGAGAATTACAGACACAGTTATTTCATGCACTAGGAATGTGGCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAATTACAGACACAGTTATTTCATGCACTAGGAATGTGGCTCAG  300

seq1  TTTAGTGTAGCTGCCAGTGACACTAAGAACCATGGTTACCCCCCTCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTAGCTGCCAGTGACACTAAGAACCATGGTTACCCCCCTCCTGC  350

seq1  TCCCTCCTATCAACCCCACAGCACCAGCTTCTGTGTGTTGGTTTACCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTATCAACCCCACAGCACCAGCTTCTGTGTGTTGGTTTACCATC  400

seq1  TTCTTGCTTATCACTCAGAGTCACAAAAGAGATGCTCATCTCCAGATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTATCACTCAGAGTCACAAAAGAGATGCTCATCTCCAGATATC  450

seq1  ACAGCACATGCAAGATCAGGGGTAGAGGTTCTTGGAGCTCACTCCTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACATGCAAGATCAGGGGTAGAGGTTCTTGGAGCTCACTCCTCTCC  500

seq1  ATCCGTTCTGCCATTTCACTGACTTCCTGCCAAGTTCCAGCTGCCTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTTCTGCCATTTCACTGACTTCCTGCCAAGTTCCAGCTGCCTCTTC  550

seq1  CTAGGGCTTTCTCATCACACCACAGAAGACTGTCTGCAAATTTAGGATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCTTTCTCATCACACCACAGAAGACTGTCTGCAAATTTAGGATTG  600

seq1  GGAATACTAAAGTATCTGTTTCTCCCAAGAGGAATCCCCAGCCAACGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACTAAAGTATCTGTTTCTCCCAAGAGGAATCCCCAGCCAACGACT  650

seq1  GCAAAGGTGTTGGTATAATGGATAATCTTGACTGTCCATCTGATTGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGTGTTGGTATAATGGATAATCTTGACTGTCCATCTGATTGGATA  700

seq1  TGCCTTTGGAGGTGAGTTTGTGGTTCTAAGAAGGATTAACTGAGTGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGGAGGTGAGTTTGTGGTTCTAAGAAGGATTAACTGAGTGGCAG  750

seq1  CACCTTCTCACAGCAATCCAGAAATTAAGAGGTCCTAAGGCAGGGCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTCACAGCAATCCAGAAATTAAGAGGTCCTAAGGCAGGGCCAGG  800

seq1  GCCAGGGGAAGTGGGGGGGGGG  822
      ||||||||||||||||||||||
seq2  GCCAGGGGAAGTGGGGGGGGGG  822