BAC Information

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BAC

Clone NameB6Ng01-215E13
Chromosome2 (Build37)
Map Location 106,609,165 - 106,736,202
singlet/doubletdoublet
Overlap geneC130023O10Rik
Upstream geneElp4, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
Downstream geneLOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215E13.bB6Ng01-215E13.g
ACCGA032296GA032297
length1,143876
definitionB6Ng01-215E13.b B6Ng01-215E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,609,165 - 106,610,306)(106,735,329 - 106,736,202)
sequence
gaattcattaagagattaatccattgatcaggccagtgcctacaggaccc
agtcacttaccaaaggcccatcagttggcaagcaagtctctaatggctga
gtctttaagagatatattagttttaaataaaaatggaaagagtatcccaa
ggatgaaatgtgagctgccatcagtatccaaggtaagagatttgttcttg
tatatcatttgatgttacctgcagagtggtaggttttaattttaggaatt
ctccctcgtgagttttgaatgatcagtgttcttcagaaacgagtctccgt
ttttcagaattgaactcttctgatctgtaaagtaagctccgagaatgatg
tagtattcaaacaccgactccgcccctgtgtgacacagtggaggaggaga
ggattggcccgcagaagcaggcatcccacgctgtcactaggtcacctggt
cgacttagtacactcatggggtcttgtaaggtttcagtttcccattccat
aggaggaagggctctgctagctgaggtctccctgggttgggaattcaatc
atctcggcctcagagaagaggcggtcggcagcaccctgctgccccttgat
ttctctgttggaagcaaaggagagagctaggcctgcacgtaaattattag
cacagattctttcatctgacccagtggcttgggggcctgagaagatgcat
ctacatgccctggatgggcccaggccgtggctcgtttataaagagtggcc
tccacaaagccagctgtcaaaacagcagtgatttgctggaggggcctagg
gatgaaaacgttcagatgaagagatgcaatgaggaagaaatacagaaacc
tccctaataaatggccagactattagctctatctattgattccacatctt
gagctcaaaggatgggaactttttctgaatgagtaatattgaccagccag
aaacaattgcctttctcttttcaagctgccagtgagtgcgttaattgtgg
catgtgtctcctctgcacttatctgcctgctcacctttgcacgcattcca
tagaattgagtctttaactgcattggccatctttgctttacttaccacca
aaagaatccacctttataacacgttttcaaaccagatctagct
gaattcccaggcctggctctttcagggttcagaggtaaggaccagcgggg
gagaggcagcaacagtcctgcccttgacagatgccccaggatgacaatga
cctgggctggctttgtgggaagaaggtagaatctggggtgtgcccagctg
gaagccgcctgtaatttaacactcgcagatggagactgagggtgatatga
tacccccagctgtctcccagggctgctttcaaggcccccctctgctgcct
gggactctggatgccttgggaagggcctgctgcgggtgggggcggcctaa
taaagcagctggtctattagaagataagctttgtggagaatcacacaatc
atcgggaatccctctaatcccaaactttattgccctagataataagcttt
ggtggcgatgctccattgcaatatggaattgtctgcaggcaggcggcacc
tgctgtgtcactcagttcccagactgcaacacacaaatcaggggcaggtg
cttggatgccgcctagactttgaaagaagcaggacagacagagtggacca
gttattctcccacgaaagggtccaaacagcctgagagaaaagggtgtggc
ttagctctgagaaggttcggttcacagttattgctggagggttttttgag
gatttgggagagagagggtagaagggaaacttttgtcagaagagcagaat
gaagcttagaaagaagggccaactggcacaggctggtctctcgcccagtt
ttctctgtttttttgtttgtttgtttgtttgttgttggtttatctgaacc
actggtgccctttacctttttctgcaacatcccacaaggagaggcgctct
cctcctcgcttcctacttcttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_106609165_106610306
seq2: B6Ng01-215E13.b_43_1185

seq1  GAATTCATTAAGAGATTAATCCATTGATCAGGCCAGTGCCTACAGGACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGAGATTAATCCATTGATCAGGCCAGTGCCTACAGGACCC  50

seq1  AGTCACTTACCAAAGGCCCATCAGTTGGCAAGCAAGTCTCTAATGGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTACCAAAGGCCCATCAGTTGGCAAGCAAGTCTCTAATGGCTGA  100

seq1  GTCTTTAAGAGATATATTAGTTTTAAATAAAAATGGAAAGAGTATCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAGAGATATATTAGTTTTAAATAAAAATGGAAAGAGTATCCCAA  150

seq1  GGATGAAATGTGAGCTGCCATCAGTATCCAAGGTAAGAGATTTGTTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAATGTGAGCTGCCATCAGTATCCAAGGTAAGAGATTTGTTCTTG  200

seq1  TATATCATTTGATGTTACCTGCAGAGTGGTAGGTTTTAATTTTAGGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATTTGATGTTACCTGCAGAGTGGTAGGTTTTAATTTTAGGAATT  250

seq1  CTCCCTCGTGAGTTTTGAATGATCAGTGTTCTTCAGAAACGAGTCTCCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCGTGAGTTTTGAATGATCAGTGTTCTTCAGAAACGAGTCTCCGT  300

seq1  TTTTCAGAATTGAACTCTTCTGATCTGTAAAGTAAGCTCCGAGAATGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAATTGAACTCTTCTGATCTGTAAAGTAAGCTCCGAGAATGATG  350

seq1  TAGTATTCAAACACCGACTCCGCCCCTGTGTGACACAGTGGAGGAGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTCAAACACCGACTCCGCCCCTGTGTGACACAGTGGAGGAGGAGA  400

seq1  GGATTGGCCCGCAGAAGCAGGCATCCCACGCTGTCACTAGGTCACCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGCCCGCAGAAGCAGGCATCCCACGCTGTCACTAGGTCACCTGGT  450

seq1  CGACTTAGTACACTCATGGGGTCTTGTAAGGTTTCAGTTTCCCATTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTAGTACACTCATGGGGTCTTGTAAGGTTTCAGTTTCCCATTCCAT  500

seq1  AGGAGGAAGGGCTCTGCTAGCTGAGGTCTCCCTGGGTTGGGAATTCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGGGCTCTGCTAGCTGAGGTCTCCCTGGGTTGGGAATTCAATC  550

seq1  ATCTCGGCCTCAGAGAAGAGGCGGTCGGCAGCACCCTGCTGCCCCTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGGCCTCAGAGAAGAGGCGGTCGGCAGCACCCTGCTGCCCCTTGAT  600

seq1  TTCTCTGTTGGAAGCAAAGGAGAGAGCTAGGCCTGCACGTAAATTATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTTGGAAGCAAAGGAGAGAGCTAGGCCTGCACGTAAATTATTAG  650

seq1  CACAGATTCTTTCATCTGACCCAGTGGCTTGGGGGCCTGAGAAGATGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTCTTTCATCTGACCCAGTGGCTTGGGGGCCTGAGAAGATGCAT  700

seq1  CTACATGCCCTGGATGGGCCCAGGCCGTGGCTCGTTTATAAAGAGTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCCCTGGATGGGCCCAGGCCGTGGCTCGTTTATAAAGAGTGGCC  750

seq1  TCCACAAAGCCAGCTGTCAAAACAGCAGTGATTTGCTGGAGGGGCCTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAGCCAGCTGTCAAAACAGCAGTGATTTGCTGGAGGGGCCTAGG  800

seq1  GATGAAAACGTTCAGATGAAGAGATGCAATGAGGAAGAAATACAGAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAACGTTCAGATGAAGAGATGCAATGAGGAAGAAATACAGAAACC  850

seq1  TCCCTAATAAATGGCCAGACTATTAGCTCTATCTATTGATTCCACATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAATAAATGGCCAGACTATTAGCTCTATCTATTGATTCCACATCTT  900

seq1  GAGCTCAAAGGATGGGAAC-TTTTCTGAATGAGTAATATTGACCAGCCAG  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGCTCAAAGGATGGGAACTTTTTCTGAATGAGTAATATTGACCAGCCAG  950

seq1  AAACAATTGCC-TTCTC-TTTCAAGCTGCCAGTGAGTGCGTTATTTGTGG  997
      ||||||||||| ||||| ||||||||||||||||||||||||| ||||||
seq2  AAACAATTGCCTTTCTCTTTTCAAGCTGCCAGTGAGTGCGTTAATTGTGG  1000

seq1  CATGTGTTCTCTCTTGCACTTATCTGCCTGCTCACCTTTGCACGCATTCA  1047
      |||||| ||||   ||||||||||||||||||||||||||||||||||| 
seq2  CATGTG-TCTCCTCTGCACTTATCTGCCTGCTCACCTTTGCACGCATTCC  1049

seq1  ATAGAATTGAGTCTTT-ACTGCATTGGCCATCTTTGCTTTACTTTTACCA  1096
      |||||||||||||||| |||||||||||||||||||||||||  ||||||
seq2  ATAGAATTGAGTCTTTAACTGCATTGGCCATCTTTGCTTTAC--TTACCA  1097

seq1  CCAAAAAGATCCACC-TTATAACACGTTTTCAAAACCAGATCTAGCT  1142
      ||||||  ||||||| ||||||||||||||| |||||||||||||||
seq2  CCAAAAGAATCCACCTTTATAACACGTTTTC-AAACCAGATCTAGCT  1143

seq1: chr2_106735329_106736202
seq2: B6Ng01-215E13.g_67_942 (reverse)

seq1  AAAAAAAGAAGTAGG-AGCGTGGAGGAGAGCGCCTCTCCTGGTGGGATGC  49
      ||||||||||||||| |||| ||||||||||||||||||| |||||||| 
seq2  AAAAAAAGAAGTAGGAAGCGAGGAGGAGAGCGCCTCTCCTTGTGGGATGT  50

seq1  TGCAGAAAAAAGGTAAA-GGCACATGTGG-TCAGGTAAAACAAACAAACA  97
      ||||| ||||||||||| |||||  |||| |||| |||| |||   ||||
seq2  TGCAG-AAAAAGGTAAAGGGCACCAGTGGTTCAGATAAACCAA--CAACA  97

seq1  AACAAACAAACAAAC-AAAAAACAGAGAAAACTGGGCGAGAGACCAGCCT  146
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAAAAAACAGAGAAAACTGGGCGAGAGACCAGCCT  147

seq1  GTGCCAGTTGGCCCTTCTTTCTAAGCTTCATTCTGCTCTTCTGACAAAAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGTTGGCCCTTCTTTCTAAGCTTCATTCTGCTCTTCTGACAAAAG  197

seq1  -TTCCCTTCTACCCTCTCTCTCCCAAATCCTCAAAAAACCCTCCAGCAAT  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCTACCCTCTCTCTCCCAAATCCTCAAAAAACCCTCCAGCAAT  247

seq1  AACTGTGAACCGAACCTTCTCAGAGCTAAGCCACACCCTTTTCTCTCAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAACCGAACCTTCTCAGAGCTAAGCCACACCCTTTTCTCTCAGG  297

seq1  CTGTTTGGACCCTTTCGTGGGAGAATAACTGGTCCACTCTGTCTGTCCTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGACCCTTTCGTGGGAGAATAACTGGTCCACTCTGTCTGTCCTG  347

seq1  CTTCTTTCAAAGTCTAGGCGGCATCCAAGCACCTGCCCCTGATTTGTGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCAAAGTCTAGGCGGCATCCAAGCACCTGCCCCTGATTTGTGTG  397

seq1  TTGCAGTCTGGGAACTGAGTGACACAGCAGGTGCCGCCTGCCTGCAGACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTCTGGGAACTGAGTGACACAGCAGGTGCCGCCTGCCTGCAGACA  447

seq1  ATTCCATATTGCAATGGAGCATCGCCACCAAAGCTTATTATCTAGGGCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATATTGCAATGGAGCATCGCCACCAAAGCTTATTATCTAGGGCAA  497

seq1  TAAAGTTTGGGATTAGAGGGATTCCCGATGATTGTGTGATTCTCCACAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGGGATTAGAGGGATTCCCGATGATTGTGTGATTCTCCACAAA  547

seq1  GCTTATCTTCTAATAGACCAGCTGCTTTATTAGGCCGCCCCCACCCGCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTTCTAATAGACCAGCTGCTTTATTAGGCCGCCCCCACCCGCAG  597

seq1  CAGGCCCTTCCCAAGGCATCCAGAGTCCCAGGCAGCAGAGGGGGGCCTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTTCCCAAGGCATCCAGAGTCCCAGGCAGCAGAGGGGGGCCTTG  647

seq1  AAAGCAGCCCTGGGAGACAGCTGGGGGTATCATATCACCCTCAGTCTCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCCCTGGGAGACAGCTGGGGGTATCATATCACCCTCAGTCTCCA  697

seq1  TCTGCGAGTGTTAAATTACAGGCGGCTTCCAGCTGGGCACACCCCAGATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGAGTGTTAAATTACAGGCGGCTTCCAGCTGGGCACACCCCAGATT  747

seq1  CTACCTTCTTCCCACAAAGCCAGCCCAGGTCATTGTCATCCTGGGGCATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTCTTCCCACAAAGCCAGCCCAGGTCATTGTCATCCTGGGGCATC  797

seq1  TGTCAAGGGCAGGACTGTTGCTGCCTCTCCCCCGCTGGTCCTTACCTCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGGGCAGGACTGTTGCTGCCTCTCCCCCGCTGGTCCTTACCTCTG  847

seq1  AACCCTGAAAGAGCCAGGCCTGGGAATTC  874
      |||||||||||||||||||||||||||||
seq2  AACCCTGAAAGAGCCAGGCCTGGGAATTC  876