BAC Information

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BAC

Clone NameB6Ng01-215F08
Chromosome2 (Build37)
Map Location 13,690,162 - 13,858,981
singlet/doubletdoublet
Overlap geneSt8sia6
Upstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn, Trdmt1, Vim
Downstream genePtpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215F08.bB6Ng01-215F08.g
ACCGA032332GA032333
length7771,090
definitionB6Ng01-215F08.b B6Ng01-215F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,858,357 - 13,858,981)(13,690,162 - 13,691,244)
sequence
gaattcttttcttgattaaatcacttgtagtggtaaggaccacttttaaa
tctggatcttctgaggtgggaagatgaactttcatacggatcttctgaga
tggaaggatttacctttaatctagaccacgtttctgcttgtggcccatac
caagaacatgaaagaagaaaatttgatttatttttctacttgcactatta
ctggcaagttcatccctttcctggcattagtacctccttcttcaggatta
ttgtggcatatactaaagaccaatggatgcatccagccttgtgaattgaa
caactactggattattgtaccttctattagtagacaacatgtaaaccatt
ctaataaactatatatatgtgtgtgtatatgatgcatataatgtatatat
gatgtatatatgtattcacatatcctatatatatatatatatgaatatat
atttattttataagttttgttcctctagagaaccctgagtaatacacttg
ggatgcaggtcaggatcatctggtggtcagaacgatacctagtaataact
gagtgagaattgtcattttctggctaagatggatccttataatggatgct
tggttaaaacaggtggttaaaaatcagttaatgtacatttgtggaaattt
agaaattatcaacaaagaaaacaatgtgtactgtcaactacatgaataat
ttgttttatttccttttgttttaaaaatattttattttttaatattttta
gatagatggggtagagagtgggtgtcc

gaattcaaagatctacaggctgatcagccagcaacagaataatggtatgg
cacccagaccaagtgtcctctcccctgtatctccccaaatcctctgtacc
tgcaaacctgtcatttgtgatcactaatcacctcgagacgccagagatgc
cttgggaaatcaccctgcacgtccacgggacaaacaattcaactgttgtt
tctccaacctgaagcttaaaaacaggagtatagcctctggcattagtagt
accttgttcagctgtgtggccagggccaggttactacaatgtatctgcgt
cttcattttccttactgtaaagtgagtgtttcagtagtcttacataatct
cactgctgaaagagagcatgatcccatgtacataaagctacagaagccca
gtgcatagtaataagacctcagtaattgctagcactccccaattccattg
agctttattcaatgcactgggcatcctgggatatcacatctgaatgacta
gtgtctatcctataagcagcaatttaatcctgacacaaatggcctaaaaa
ccttgggaggaaatataagaaagaatggtaggtgtgctggctagatttat
gaccacttgacacaaactatagccatcctcagtttgaaaatatgcctcca
taagatcaggaggtaggcaagcctgcagagcattttcttaattagtgacc
agtgagtagggcccagttcattgcaagtggtaccatccctggggtgatga
tggtcctgggttctataaaggaagcaggctgattaagccagtaagcagca
tctctccaaggtgtctgcattgctccttcctccctgttcctgccctgctt
gagttcctgctctggattctttcagttgtagactatgatagagaaaggca
taagtccaataactcctttccttcccaacttgctttttgggtcatggtgt
ttcactgttgccgacagaaaccctacctaagacagtagagaagatggatt
catctgtatctcactccatagcctctgtgcattacctggtggaaatcttt
gctttaattagatcctcttttacaagtacttaaattcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_13858357_13858981
seq2: B6Ng01-215F08.b_193_821 (reverse)

seq1  GCACACCCACTCTCTA-CCCATCTATCTAAAAAATATTAAAAA--TAAAT  47
      | |||||||||||||| ||||||||||| ||||||||||||||   ||||
seq2  GGACACCCACTCTCTACCCCATCTATCT-AAAAATATTAAAAAATAAAAT  49

seq1  ATTTTTAAAAC-AAAGGAAATAAAACAAATTATTCATGTAGTTGACAGTA  96
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAACAAAAGGAAATAAAACAAATTATTCATGTAGTTGACAGTA  99

seq1  CACATTG-TTTCTTTGTTGATAATTTCTAAATTTCCACAAATGTACATTA  145
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTTTTCTTTGTTGATAATTTCTAAATTTCCACAAATGTACATTA  149

seq1  ACTGATTTTTAACCACCTGTTTTAACCAAGCATCCATTATAAGGATCCAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTTAACCACCTGTTTTAACCAAGCATCCATTATAAGGATCCAT  199

seq1  CTTAGCCAGAAAATGACAATTCTCACTCAGTTATTACTAGGTATCGTTCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCAGAAAATGACAATTCTCACTCAGTTATTACTAGGTATCGTTCT  249

seq1  GACCACCAGATGATCCTGACCTGCATCCCAAGTGTATTACTCAGGGTTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCAGATGATCCTGACCTGCATCCCAAGTGTATTACTCAGGGTTCT  299

seq1  CTAGAGGAACAAAACTTATAAAATAAATATATATTCATATATATATATAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGAACAAAACTTATAAAATAAATATATATTCATATATATATATAT  349

seq1  ATAGGATATGTGAATACATATATACATCATATATACATTATATGCATCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATATGTGAATACATATATACATCATATATACATTATATGCATCAT  399

seq1  ATACACACACATATATATAGTTTATTAGAATGGTTTACATGTTGTCTACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACATATATATAGTTTATTAGAATGGTTTACATGTTGTCTACT  449

seq1  AATAGAAGGTACAATAATCCAGTAGTTGTTCAATTCACAAGGCTGGATGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGGTACAATAATCCAGTAGTTGTTCAATTCACAAGGCTGGATGC  499

seq1  ATCCATTGGTCTTTAGTATATGCCACAATAATCCTGAAGAAGGAGGTACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGGTCTTTAGTATATGCCACAATAATCCTGAAGAAGGAGGTACT  549

seq1  AATGCCAGGAAAGGGATGAACTTGCCAGTAATAGTGCAAGTAGAAAAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGAAAGGGATGAACTTGCCAGTAATAGTGCAAGTAGAAAAATA  599

seq1  AATCAAATTTTCTTCTTTCATGTTCTTGGT  625
      ||||||||||||||||||||||||||||||
seq2  AATCAAATTTTCTTCTTTCATGTTCTTGGT  629


seq1: chr2_13690162_13691244
seq2: B6Ng01-215F08.g_66_1155

seq1  GAATTCAAAGATCTACAGGCTGATCAGCCAGCAACAGAATAATGGTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATCTACAGGCTGATCAGCCAGCAACAGAATAATGGTATGG  50

seq1  CACCCAGACCAAGTGTCCTCTCCCCTGTATCTCCCCAAATCCTCTGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGACCAAGTGTCCTCTCCCCTGTATCTCCCCAAATCCTCTGTACC  100

seq1  TGCAAACCTGTCATTTGTGATCACTAATCACCTCGAGACGCCAGAGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCTGTCATTTGTGATCACTAATCACCTCGAGACGCCAGAGATGC  150

seq1  CTTGGGAAATCACCCTGCACGTCCACGGGACAAACAATTCAACTGTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAATCACCCTGCACGTCCACGGGACAAACAATTCAACTGTTGTT  200

seq1  TCTCCAACCTGAAGCTTAAAAACAGGAGTATAGCCTCTGGCATTAGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAACCTGAAGCTTAAAAACAGGAGTATAGCCTCTGGCATTAGTAGT  250

seq1  ACCTTGTTCAGCTGTGTGGCCAGGGCCAGGTTACTACAATGTATCTGCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTCAGCTGTGTGGCCAGGGCCAGGTTACTACAATGTATCTGCGT  300

seq1  CTTCATTTTCCTTACTGTAAAGTGAGTGTTTCAGTAGTCTTACATAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTTCCTTACTGTAAAGTGAGTGTTTCAGTAGTCTTACATAATCT  350

seq1  CACTGCTGAAAGAGAGCATGATCCCATGTACATAAAGCTACAGAAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGAAAGAGAGCATGATCCCATGTACATAAAGCTACAGAAGCCCA  400

seq1  GTGCATAGTAATAAGACCTCAGTAATTGCTAGCACTCCCCAATTCCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAGTAATAAGACCTCAGTAATTGCTAGCACTCCCCAATTCCATTG  450

seq1  AGCTTTATTCAATGCACTGGGCATCCTGGGATATCACATCTGAATGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTCAATGCACTGGGCATCCTGGGATATCACATCTGAATGACTA  500

seq1  GTGTCTATCCTATAAGCAGCAATTTAATCCTGACACAAATGGCCTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATCCTATAAGCAGCAATTTAATCCTGACACAAATGGCCTAAAAA  550

seq1  CCTTGGGAGGAAATATAAGAAAGAATGGTAGGTGTGCTGGCTAGATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAGGAAATATAAGAAAGAATGGTAGGTGTGCTGGCTAGATTTAT  600

seq1  GACCACTTGACACAAACTATAGCCATCCTCAGTTTGAAAATATGCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTTGACACAAACTATAGCCATCCTCAGTTTGAAAATATGCCTCCA  650

seq1  TAAGATCAGGAGGTAGGCAAGCCTGCAGAGCATTTTCTTAATTAGTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCAGGAGGTAGGCAAGCCTGCAGAGCATTTTCTTAATTAGTGACC  700

seq1  AGTGAGTAGGGCCCAGTTCATTGCAAGTGGTACCATCCCTGGGGTGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTAGGGCCCAGTTCATTGCAAGTGGTACCATCCCTGGGGTGATGA  750

seq1  TGGTCCTGGGTTCTAT-AAGGAAGCAGGCTGATTAAGCCAGTAAGCAGCA  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGTCCTGGGTTCTATAAAGGAAGCAGGCTGATTAAGCCAGTAAGCAGCA  800

seq1  TCTCTCCAAGGTGTCTGCATTGCTCCTTCCTCCCTGTTCCTGCCCTGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAAGGTGTCTGCATTGCTCCTTCCTCCCTGTTCCTGCCCTGCTT  850

seq1  GAGTTCCTGCTCTGGATTCCTTCAGTTGTAGACTATGATAGAG-AAGGCA  898
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  GAGTTCCTGCTCTGGATTCTTTCAGTTGTAGACTATGATAGAGAAAGGCA  900

seq1  TAAGTCCAATAACTCCTTTCCTTCCCAACTTGCTTTTT-GGTCATGGTGT  947
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAAGTCCAATAACTCCTTTCCTTCCCAACTTGCTTTTTGGGTCATGGTGT  950

seq1  TTCACTG-TGGCGACAGAAACCCTACCTAAGACAGTAGAGAAGATGGA-T  995
      ||||||| || ||||||||||||||||||||||||||||||||||||| |
seq2  TTCACTGTTGCCGACAGAAACCCTACCTAAGACAGTAGAGAAGATGGATT  1000

seq1  CATCTGTATCTCACTCCATAAGCCTCTGTGCATTA-CTTGTGG-AATCTT  1043
      ||||||||||||||||||| ||||||||||||||| || |||| ||||||
seq2  CATCTGTATCTCACTCCAT-AGCCTCTGTGCATTACCTGGTGGAAATCTT  1049

seq1  TGCTTTTAATTTAGAT-CTC-TTTACAAGTACTTAAA-TCTTC  1083
      ||||||  | |||||| ||| |||||||||||||||| |||||
seq2  TGCTTT--AATTAGATCCTCTTTTACAAGTACTTAAATTCTTC  1090


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