BAC Information

Click to search

BAC

Clone NameB6Ng01-215M22
Chromosome2 (Build37)
Map Location 96,687,131 - 96,829,776
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043267, Lrrc4c, LOC621146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215M22.bB6Ng01-215M22.g
ACCGA032669GA032670
length1,1381,156
definitionB6Ng01-215M22.b B6Ng01-215M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,828,631 - 96,829,776)(96,687,131 - 96,688,281)
sequence
gaattcaactcagctctttaccacaataaatctttataacctcttactat
cagaaaaactttatcaacaattttagaattttaattataagcattatggc
taatgcctttgctataaaaagaaaggtctctcaccaataaaggtcttctg
aatcaagctttgtttacctattaaatatttaagaaagtgatgacattttt
aaggtattaaaagcaagtcacacaaaggggaagaagcctgttcagaacaa
tacaatgatagaggcaggatgcaaaatacacacagcctatggctaaagat
cataggtttttaataaacagaatcatgatcaactccattctcaacacact
cactaattcaacataaattaccccctaacttgtgaggctattatttggga
atatttttcaatatcaatggccattttcaagtagaaatatgtggaccaca
actgactttcactgagtacaagcctcgagactctatacaacagacaagag
ctcctgataacacagacctctctatcctcagtgtgcatagtttcaatgag
gaaactgttacattgaggctagtgatggccatgcaaaatttaaaaaaaaa
aaacaaaacaaacaaaccaggaacaatttaaaaataatttgtttttttaa
tatttttattacctattttcctcaaccacatttccaatgctatcccaaaa
gtaaattgcaaccatcaccagtccctgtgttttagttccaaccaagcatt
taaaaaagtgactgaagatagatctagtatagaactaaataatgtaaaaa
aaaaaaacagccattacagtggtttttcaaatacaatcttagtggtttac
agataagaagaaaatatttgtagataaagcagagagacctttctgttatt
tagagaatggctactggacctggacttccaggtccagtattgtgaacaaa
aatactaccttcttggtatttaaaaggcttattttctggagaatattaca
gtaccatttcagaaatgaatatatacatacggtatgtattatatcaagaa
cagccacactactatactattctttcagagaagtctatgctatgcctata
aaacaggttcttggcaagcatacctagtacagcctaca

gaattcacgatatatgaggaaaagttcatttcctatttacctaaagacac
acacatattaatcttgatctataaagtttaaataaagaaatcaataaaaa
atatatcattatattcatcaaatttcactgctcattggattcctgctcac
catatcttcactcagatgtgaagtgttttgaatatggccacagatagatt
ttatacaagtatatacttaattacggcatgcatcagcaaagtggaaaagt
agagattaaaagtaggtaagacacttggaaattctaaagctatacaagag
atgtcgtgaatcattatttgtatgttctagaattgcagttggaatttaaa
gtggtgcacaaataatttgtgctaacaaatacccttaaatttacccaccc
acacaactgatgttttaaaaatactaaagtttattaatttaatcctcttt
taatttttaatatttgatggaagttgtgatatatacaataatacaaaaac
ttgtgcagatgaagatactgcaaggataatttaaaagacccctttcattt
aggatatgcacattagtgactatatactactaggatgtcaatagagtccc
ttactacaaggaagaacactagttcatccatacatctgcagaggctatgt
atgacttaactttggtcctgtgtttgacaaaaatattttagtctttattc
tgttcctttacctacattcatgccttaacctagatccattgaaaatactc
ttctttgtgcaaatgagttggacaagttcattaccacttctggaaaacat
cttgaagcttatgtcatgctgagttagtggttttgtaattaaatgtgtgc
agttttatttttcccaagtcgatgaattaatccttgtgctatgcagtttc
ttattggaaaatgtaatgctcttattttgttttccttatacaaaatggca
ataactgcatcttgcctaatgaaattttataaagttgtttatagatattt
gatatatgtatttcatgccccttattcatattaaccacaaatacaattct
acaaataggaccctcccacattctcctattatagactattagaaatctaa
agacatgttctctcttatacccccataccgacgatacacaggcaacacac
acatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_96828631_96829776
seq2: B6Ng01-215M22.b_43_1180 (reverse)

seq1  TGTA-GCTGTACTAAAGGGTATGCTTTTGCCAAAGAACTGTTTTAATTAG  49
      |||| |||||||||   |||||||  |||||||  | ||||||| ||  |
seq2  TGTAGGCTGTACTA---GGTATGC--TTGCCAAGAACCTGTTTT-ATAGG  44

seq1  CATAGCAATAGAC-TCTCTGAAAGAATAGTATAGTAAGTGTGGCTGGTTC  98
      |||||| |||||| ||||||||||||||||||||| ||||||||| ||||
seq2  CATAGC-ATAGACTTCTCTGAAAGAATAGTATAGT-AGTGTGGCT-GTTC  91

seq1  TTGAATATAATACATACCCTTATGTATATATTCATTTCTGAAAATGGTAC  148
      ||| |||||||||||| || |||||||||||||||||||| |||||||||
seq2  TTG-ATATAATACATA-CCGTATGTATATATTCATTTCTG-AAATGGTAC  138

seq1  TGTAATATTCTCCAGAAAATAAGCC-TTTAAATACCAAGAAGGTAGTATT  197
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTAATATTCTCCAGAAAATAAGCCTTTTAAATACCAAGAAGGTAGTATT  188

seq1  TTTG-TCACAATACTGGACCTGGAAGTCCAGGTCCCAGTAGCCATTCTCT  246
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTGTTCACAATACTGGACCTGGAAGTCCAGGT-CCAGTAGCCATTCTCT  237

seq1  AAATAACAG-AAGGTCTCTCTGCTTTATCTACAAATATTTTCTTCTTATC  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAGAAAGGTCTCTCTGCTTTATCTACAAATATTTTCTTCTTATC  287

seq1  TGTAAACCACTAAGATTGTATTTGAAAAACCACTGTAATGGCTGTTTTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCACTAAGATTGTATTTGAAAAACCACTGTAATGGCTGTTTTTT  337

seq1  TTTTTTACATTATTTAGTTCTATACTAGATCTATCTTCAGTCACTTTTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACATTATTTAGTTCTATACTAGATCTATCTTCAGTCACTTTTTT  387

seq1  AAATGCTTGGTTGGAACTAAAACACAGGGACTGGTGATGGTTGCAATTTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTGGTTGGAACTAAAACACAGGGACTGGTGATGGTTGCAATTTA  437

seq1  CTTTTGGGATAGCATTGGAAATGTGGTTGAGGAAAATAGGTAATAAAAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGATAGCATTGGAAATGTGGTTGAGGAAAATAGGTAATAAAAAT  487

seq1  ATTAAAAAAACAAATTATTTTTAAATTGTTCCTGGTTTGTTTGTTTTGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAACAAATTATTTTTAAATTGTTCCTGGTTTGTTTGTTTTGTT  537

seq1  TTTTTTTTTTAAATTTTGCATGGCCATCACTAGCCTCAATGTAACAGTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAATTTTGCATGGCCATCACTAGCCTCAATGTAACAGTTT  587

seq1  CCTCATTGAAACTATGCACACTGAGGATAGAGAGGTCTGTGTTATCAGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGAAACTATGCACACTGAGGATAGAGAGGTCTGTGTTATCAGGA  637

seq1  GCTCTTGTCTGTTGTATAGAGTCTCGAGGCTTGTACTCAGTGAAAGTCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGTCTGTTGTATAGAGTCTCGAGGCTTGTACTCAGTGAAAGTCAG  687

seq1  TTGTGGTCCACATATTTCTACTTGAAAATGGCCATTGATATTGAAAAATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTCCACATATTTCTACTTGAAAATGGCCATTGATATTGAAAAATA  737

seq1  TTCCCAAATAATAGCCTCACAAGTTAGGGGGTAATTTATGTTGAATTAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAATAATAGCCTCACAAGTTAGGGGGTAATTTATGTTGAATTAGT  787

seq1  GAGTGTGTTGAGAATGGAGTTGATCATGATTCTGTTTATTAAAAACCTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTTGAGAATGGAGTTGATCATGATTCTGTTTATTAAAAACCTAT  837

seq1  GATCTTTAGCCATAGGCTGTGTGTATTTTGCATCCTGCCTCTATCATTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTAGCCATAGGCTGTGTGTATTTTGCATCCTGCCTCTATCATTGT  887

seq1  ATTGTTCTGAACAGGCTTCTTCCCCTTTGTGTGACTTGCTTTTAATACCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTGAACAGGCTTCTTCCCCTTTGTGTGACTTGCTTTTAATACCT  937

seq1  TAAAAATGTCATCACTTTCTTAAATATTTAATAGGTAAACAAAGCTTGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTCATCACTTTCTTAAATATTTAATAGGTAAACAAAGCTTGAT  987

seq1  TCAGAAGACCTTTATTGGTGAGAGACCTTTCTTTTTATAGCAAAGGCATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGACCTTTATTGGTGAGAGACCTTTCTTTTTATAGCAAAGGCATT  1037

seq1  AGCCATAATGCTTATAATTAAAATTCTAAAATTGTTGATAAAGTTTTTCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAATGCTTATAATTAAAATTCTAAAATTGTTGATAAAGTTTTTCT  1087

seq1  GATAGTAAGAGGTTATAAAGATTTATTGTGGTAAAGAGCTGAGTTGAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTAAGAGGTTATAAAGATTTATTGTGGTAAAGAGCTGAGTTGAATT  1137

seq1  C  1146
      |
seq2  C  1138


seq1: chr2_96687131_96688281
seq2: B6Ng01-215M22.g_68_1223

seq1  GAATTCACGATATATGAGGAAAAGTTCATTTCCTATTTACCTAAAGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGATATATGAGGAAAAGTTCATTTCCTATTTACCTAAAGACAC  50

seq1  ACACATATTAATCTTGATCTATAAAGTTTAAATAAAGAAATCAATAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTAATCTTGATCTATAAAGTTTAAATAAAGAAATCAATAAAAA  100

seq1  ATATATCATTATATTCATCAAATTTCACTGCTCATTGGATTCCTGCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCATTATATTCATCAAATTTCACTGCTCATTGGATTCCTGCTCAC  150

seq1  CATATCTTCACTCAGATGTGAAGTGTTTTGAATATGGCCACAGATAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTCACTCAGATGTGAAGTGTTTTGAATATGGCCACAGATAGATT  200

seq1  TTATACAAGTATATACTTAATTACGGCATGCATCAGCAAAGTGGAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAAGTATATACTTAATTACGGCATGCATCAGCAAAGTGGAAAAGT  250

seq1  AGAGATTAAAAGTAGGTAAGACACTTGGAAATTCTAAAGCTATACAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTAAAAGTAGGTAAGACACTTGGAAATTCTAAAGCTATACAAGAG  300

seq1  ATGTCGTGAATCATTATTTGTATGTTCTAGAATTGCAGTTGGAATTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGTGAATCATTATTTGTATGTTCTAGAATTGCAGTTGGAATTTAAA  350

seq1  GTGGTGCACAAATAATTTGTGCTAACAAATACCCTTAAATTTACCCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCACAAATAATTTGTGCTAACAAATACCCTTAAATTTACCCACCC  400

seq1  ACACAACTGATGTTTTAAAAATACTAAAGTTTATTAATTTAATCCTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTGATGTTTTAAAAATACTAAAGTTTATTAATTTAATCCTCTTT  450

seq1  TAATTTTTAATATTTGATGGAAGTTGTGATATATACAATAATACAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAATATTTGATGGAAGTTGTGATATATACAATAATACAAAAAC  500

seq1  TTGTGCAGATGAAGATACTGCAAGGATAATTTAAAAGACCCCTTTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGATGAAGATACTGCAAGGATAATTTAAAAGACCCCTTTCATTT  550

seq1  AGGATATGCACATTAGTGACTATATACTACTAGGATGTCAATAGAGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGCACATTAGTGACTATATACTACTAGGATGTCAATAGAGTCCC  600

seq1  TTACTACAAGGAAGAACACTAGTTCATCCATACATCTGCAGAGGCTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACAAGGAAGAACACTAGTTCATCCATACATCTGCAGAGGCTATGT  650

seq1  ATGACTTAACTTTGGTCCTGTGTTTGACAAAAATATTTTAGTCTTTATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTAACTTTGGTCCTGTGTTTGACAAAAATATTTTAGTCTTTATTC  700

seq1  TGTTCCTTTACCTACATTCATGCCTTAACCTAGATCCATTGAAAATACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTTACCTACATTCATGCCTTAACCTAGATCCATTGAAAATACTC  750

seq1  TTCTTTGTGCAAATGAGTTGGACAAGTTCATTACCACTTCTGGAAAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGCAAATGAGTTGGACAAGTTCATTACCACTTCTGGAAAACAT  800

seq1  CTTGAAGCTTATGTCATGCTGAGTTAGTGGTTTTGTAATTAAATGTGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCTTATGTCATGCTGAGTTAGTGGTTTTGTAATTAAATGTGTGC  850

seq1  AGTTTTA-TTTTCCCAAGTCGATGAATTAATCCTTGTGCTATGCAGTTTC  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTTTTCCCAAGTCGATGAATTAATCCTTGTGCTATGCAGTTTC  900

seq1  TTATTGGAAAATGTAATGCTCT--ATTTGTTTTCCTTATACAAAATGGC-  946
      ||||||||||||||||||||||   |||||||||||||||||||||||| 
seq2  TTATTGGAAAATGTAATGCTCTTATTTTGTTTTCCTTATACAAAATGGCA  950

seq1  ATAACTGCATCTTGCCTAATGAAATTTTATAAAGTTGTTTAATAGATATT  996
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATAACTGCATCTTGCCTAATGAAATTTTATAAAGTTGTTT-ATAGATATT  999

seq1  TGATATATGTATTTCATGCCCC-TATTCATAT--AACACAAATACAATTC  1043
      |||||||||||||||||||||| |||||||||  | ||||||||||||||
seq2  TGATATATGTATTTCATGCCCCTTATTCATATTAACCACAAATACAATTC  1049

seq1  TACAAATA-GACCCTCCACCAATTTCTCTATATTA-AGACTAATTAGAAA  1091
      |||||||| |||||||  |||  |||||  ||||| ||||| ||||||||
seq2  TACAAATAGGACCCTC--CCACATTCTC-CTATTATAGACT-ATTAGAAA  1095

seq1  TCTTAAAGACATGTT-TCTCTATATACACACATACACAACATACACAG--  1138
      || |||||||||||| ||||| ||||| | |||||  |  ||||||||  
seq2  TC-TAAAGACATGTTCTCTCT-TATACCCCCATACCGACGATACACAGGC  1143

seq1  CACACACACATAT  1151
       ||||||||||||
seq2  AACACACACATAT  1156


| Home | SequenceCutter | Blast | Download |