BAC Information

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BAC

Clone NameB6Ng01-216E19
Chromosome2 (Build37)
Map Location 115,521,805 - 115,736,907
singlet/doubletdoublet
Overlap geneBC052040, Mrg1
Upstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236
Downstream geneG630016G05Rik, 2810405F15Rik, LOC433464, Tmco5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216E19.bB6Ng01-216E19.g
ACCGA033027GA033028
length1,104931
definitionB6Ng01-216E19.b B6Ng01-216E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,735,805 - 115,736,907)(115,521,805 - 115,522,736)
sequence
gaattcttgactgttcataccctcatataaataatgcctgtctatttact
atcaggtgaattacaaaataaatttagaattgtatatattatgcttaagt
caatttctattccattgtaaaataaaattttccagtcccagggagtagtt
cactatttttaaatgataactctaatgatatagttttgctaaataattga
ggaaacccctttgcagtatattataatgaatcttttaagacaaatgtaaa
agtgcttgcatggtacttcgtggagatgatatgattttccaagataacac
cagaaaattggtaacagaggggaaaataaaacaatgactacccccctgtt
gcttacgttacctacacaaaatcttccacagtctaacagaatttaccaag
agactaaaatggattcaaagatcaaaatctctgtaacagaaaagggcagc
ataatgacattgaggtgtgtgtcgtggctaagagtcttggcatttgacta
taagagcaaacaagccaatgctctgaaataataatttctaagttttcatt
ctgcttttgaattgaaccacagagctgaggtcttagtaagtattcataac
ttggtactgaactgaattcgcaccagatagaatggaaaaggctcgggaag
gaaacacactgaaaacatccattgggcaagagggccactcagcaagctgt
ttcttacaggagattagatttgaagttcagtttgaatcaggggaaggaac
tgttgttagtagacagatagcagtatgagaggccgtgaaggaggggaact
tagtccaggaagaaaacggctttctctttctagagaaaaataaacttgca
agttatctactatacagagaaaggggggtggagacagagacagacacaga
gagaggggcagggagagagagagaaacagagagagacagagagagaacag
agagagagcgagcccagatccgtagagcagttgaaagagcagtggttcac
acacagcagcgtgcagtgtgatctgtggagaagtaaacttggacaatcat
caggagcttgggtctaatcttacccagaacatgtgtggtggatctcaggc
aatt

gaattctatacctatgccgttttgttccaccatgaagcttcacagaaggc
ttggggagaagtactggatagatcacttcgttagcttatgagtaaactaa
gctgaagctaaaaatcttgccaacacacaggacatgaggactcatgtctg
tgtggatggacaaaatgagccaggtattcttgtcttgctcaacagccttg
cactatatttaatatgaatctgtagagtcagtgtaaaaaactatcattgt
acccttatatccagaatacagtgaccttattgggagttcaaatcaagtag
ttgatttatatatgatccagatgttaatttaaatgataaatttaaattca
ggagataaattggctaaaggatatttgttagggagtatatatttttaaac
gtttaattagagtttctattttatcctgaattataaattgctccaaataa
aaacctattttaataaataggctttaaagatttaagacagcttttttttt
ctccaggtgtatataattgacataaagcacatgtatttgaagcctataat
tggataagtttaacatatatgtacactcaggaaagtatcacatagtagat
gctgaacatggccagtaccctctggagttcacagtcttgtttccccacta
cctaaccctttcagagacccctggccagcctgccacttcctaatggtctg
ttggcattatgtagcatcttttctttttgtttttattatttttccttccc
tttcttcctttttcttttaatttagttagttttgggttcccttttacttt
gtttctatttctatggtttttttaaatatattttaatgggagctatcatt
tctttgtctgggttgtttgttgttgtttgtcagactgggtttctctgttt
aatcttggctcttttggaattaattggcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115735805_115736907
seq2: B6Ng01-216E19.b_46_1149 (reverse)

seq1  AATTGCCTGAGATC--ACACACATTGTCTGGGTTAGAATTAGACCCAAGC  48
      ||||||||||||||   |||||||  ||||||| || |||||||||||||
seq2  AATTGCCTGAGATCCACCACACATGTTCTGGGTAAG-ATTAGACCCAAGC  49

seq1  TCCTGATGA-TGTCCAGGTCTACTTTCTCCACAGATCACACTGCACGCTG  97
      ||||||||| |||||| || ||| ||||||||||||||||||||||||||
seq2  TCCTGATGATTGTCCAAGTTTAC-TTCTCCACAGATCACACTGCACGCTG  98

seq1  CTGTGTGTGAA-CACTGCTCTTTCCACTGCTCTACGGATCTGGGCTCGCT  146
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  CTGTGTGTGAACCACTGCTCTTTCAACTGCTCTACGGATCTGGGCTCGCT  148

seq1  CTCTCTCTGTTTCTCTCTCTGTCTCTCTCTGTTTCTCTCTCTCTCCCTGC  196
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTG-TTCTCTCTCTGTCTCTCTCTGTTTCTCTCTCTCTCCCTGC  197

seq1  CCCTCTCTCTGTGTCTGTCTCTGTCTCCACCCCCCTTTCTCTGTATAGTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTCTGTGTCTGTCTCTGTCTCCACCCCCCTTTCTCTGTATAGTA  247

seq1  GATAACTTGCAAGTTTATTTTTCTCTAGAAAGAGAAAGCCGTTTTCTTCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTGCAAGTTTATTTTTCTCTAGAAAGAGAAAGCCGTTTTCTTCC  297

seq1  TGGACTAAGTTCCCCTCCTTCACGGCCTCTCATACTGCTATCTGTCTACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAAGTTCCCCTCCTTCACGGCCTCTCATACTGCTATCTGTCTACT  347

seq1  AACAACAGTTCCTTCCCCTGATTCAAACTGAACTTCAAATCTAATCTCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGTTCCTTCCCCTGATTCAAACTGAACTTCAAATCTAATCTCCT  397

seq1  GTAAGAAACAGCTTGCTGAGTGGCCCTCTTGCCCAATGGATGTTTTCAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAACAGCTTGCTGAGTGGCCCTCTTGCCCAATGGATGTTTTCAGT  447

seq1  GTGTTTCCTTCCCGAGCCTTTTCCATTCTATCTGGTGCGAATTCAGTTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCTTCCCGAGCCTTTTCCATTCTATCTGGTGCGAATTCAGTTCA  497

seq1  GTACCAAGTTATGAATACTTACTAAGACCTCAGCTCTGTGGTTCAATTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAGTTATGAATACTTACTAAGACCTCAGCTCTGTGGTTCAATTCA  547

seq1  AAAGCAGAATGAAAACTTAGAAATTATTATTTCAGAGCATTGGCTTGTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAATGAAAACTTAGAAATTATTATTTCAGAGCATTGGCTTGTTT  597

seq1  GCTCTTATAGTCAAATGCCAAGACTCTTAGCCACGACACACACCTCAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTATAGTCAAATGCCAAGACTCTTAGCCACGACACACACCTCAATG  647

seq1  TCATTATGCTGCCCTTTTCTGTTACAGAGATTTTGATCTTTGAATCCATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATGCTGCCCTTTTCTGTTACAGAGATTTTGATCTTTGAATCCATT  697

seq1  TTAGTCTCTTGGTAAATTCTGTTAGACTGTGGAAGATTTTGTGTAGGTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCTTGGTAAATTCTGTTAGACTGTGGAAGATTTTGTGTAGGTAA  747

seq1  CGTAAGCAACAGGGGGGTAGTCATTGTTTTATTTTCCCCTCTGTTACCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGCAACAGGGGGGTAGTCATTGTTTTATTTTCCCCTCTGTTACCAA  797

seq1  TTTTCTGGTGTTATCTTGGAAAATCATATCATCTCCACGAAGTACCATGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGTGTTATCTTGGAAAATCATATCATCTCCACGAAGTACCATGC  847

seq1  AAGCACTTTTACATTTGTCTTAAAAGATTCATTATAATATACTGCAAAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTTTACATTTGTCTTAAAAGATTCATTATAATATACTGCAAAGG  897

seq1  GGTTTCCTCAATTATTTAGCAAAACTATATCATTAGAGTTATCATTTAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTCAATTATTTAGCAAAACTATATCATTAGAGTTATCATTTAAA  947

seq1  AATAGTGAACTACTCCCTGGGACTGGAAAATTTTATTTTACAATGGAATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGAACTACTCCCTGGGACTGGAAAATTTTATTTTACAATGGAATA  997

seq1  GAAATTGACTTAAGCATAATATATACAATTCTAAATTTATTTTGTAATTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGACTTAAGCATAATATATACAATTCTAAATTTATTTTGTAATTC  1047

seq1  ACCTGATAGTAAATAGACAGGCATTATTTATATGAGGGTATGAACAGTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATAGTAAATAGACAGGCATTATTTATATGAGGGTATGAACAGTCA  1097

seq1  AGAATTC  1103
      |||||||
seq2  AGAATTC  1104


seq1: chr2_115521805_115522736
seq2: B6Ng01-216E19.g_65_995

seq1  GAATTCTATACCTATGCCGTTTTGTTCCACCATGAAGCTTCACAGAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACCTATGCCGTTTTGTTCCACCATGAAGCTTCACAGAAGGC  50

seq1  TTGGGGAGAAGTACTGGATAGATCACTTCGTTAGCTTATGAGTAAACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAAGTACTGGATAGATCACTTCGTTAGCTTATGAGTAAACTAA  100

seq1  GCTGAAGCTAAAAATCTTGCCAACACACAGGACATGAGGACTCATGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCTAAAAATCTTGCCAACACACAGGACATGAGGACTCATGTCTG  150

seq1  TGTGGATGGACAAAATGAGCCAGGTATTCTTGTCTTGCTCAACAGCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGGACAAAATGAGCCAGGTATTCTTGTCTTGCTCAACAGCCTTG  200

seq1  CACTATATTTAATATGAATCTGTAGAGTCAGTGTAAAAAACTATCATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATTTAATATGAATCTGTAGAGTCAGTGTAAAAAACTATCATTGT  250

seq1  ACCCTTATATCCAGAATACAGTGACCTTATTGGGAGTTCAAATCAAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTATATCCAGAATACAGTGACCTTATTGGGAGTTCAAATCAAGTAG  300

seq1  TTGATTTATATATGATCCAGATGTTAATTTAAATGATAAATTTAAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATATATGATCCAGATGTTAATTTAAATGATAAATTTAAATTCA  350

seq1  GGAGATAAATTGGCTAAAGGATATTTGTTAGGGAGTATATATTTTTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAATTGGCTAAAGGATATTTGTTAGGGAGTATATATTTTTAAAC  400

seq1  GTTTAATTAGAGTTTCTATTTTATCCTGAATTATAAATTGCTCCAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTAGAGTTTCTATTTTATCCTGAATTATAAATTGCTCCAAATAA  450

seq1  AAACCTATTTTAATAAATAGGCTTTAAAGATTTAAGACAGCTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATTTTAATAAATAGGCTTTAAAGATTTAAGACAGCTTTTTTTTT  500

seq1  CTCCAGGTGTATATAATTGACATAAAGCACATGTATTTGAAGCCTATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTGTATATAATTGACATAAAGCACATGTATTTGAAGCCTATAAT  550

seq1  TGGATAAGTTTAACATATATGTACACTCAGGAAAGTATCACATAGTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGTTTAACATATATGTACACTCAGGAAAGTATCACATAGTAGAT  600

seq1  GCTGAACATGGCCAGTACCCTCTGGAGTTCACAGTCTTGTTTCCCCACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACATGGCCAGTACCCTCTGGAGTTCACAGTCTTGTTTCCCCACTA  650

seq1  CCTAACCCTTTCAGAGACCCCTGGCCAGCCTGCCACTTCCTAATGGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCCTTTCAGAGACCCCTGGCCAGCCTGCCACTTCCTAATGGTCTG  700

seq1  TTGGCATTATGTAGCATC-TTTCTTTTTGTTTTTATTATTTTTCCTTCCC  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGGCATTATGTAGCATCTTTTCTTTTTGTTTTTATTATTTTTCCTTCCC  750

seq1  TTTCTTCCTTTTTCTTTTAATTTAGTTAGTTTT-GGTTTCCTTTTACTTT  798
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  TTTCTTCCTTTTTCTTTTAATTTAGTTAGTTTTGGGTTCCCTTTTACTTT  800

seq1  GTTTCTATTTCTATGGTTTTTTTTAAATATATTTTAAT-GGAGCTATCAT  847
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  GTTTCTATTTCTATGG-TTTTTTTAAATATATTTTAATGGGAGCTATCAT  849

seq1  TTCTTTGTCTGGTTTGTTTGTTTGTTTGTTTGTTCAGACTGGGTTTCTCT  897
      |||||||||||| |||||||||   ||||||| |||||||||||||||||
seq2  TTCTTTGTCTGGGTTGTTTGTT--GTTGTTTG-TCAGACTGGGTTTCTCT  896

seq1  GTTTAATCTTGGCTCTTTTGGAATTAATTGGCTTT  932
      |||||||||||||||||||||||||||||||||||
seq2  GTTTAATCTTGGCTCTTTTGGAATTAATTGGCTTT  931


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