BAC Information

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BAC

Clone NameB6Ng01-216O05
Chromosome2 (Build37)
Map Location 8,668,413 - 8,726,193
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC672230
Downstream geneLOC100040710, LOC100040548, LOC100040566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216O05.bB6Ng01-216O05.g
ACCGA033459GA033460
length1,1931,209
definitionB6Ng01-216O05.b B6Ng01-216O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,724,980 - 8,726,193)(8,668,413 - 8,669,608)
sequence
gaattccaaaccacactctggtttcaatattccacagggctctcgtgtgt
actaaccactcaaaacaaacataaagagcactagttctttttgagtgcag
ccacaatatttttgttttatgcatttggaaggtttgatattcccagcaat
gttgttttaatgattttttataagcatgctccaaaagcaaactttacact
tcaaatatcagagaaaaatgttacaatagtgaacacaactgctttttaaa
ccttggaatcagggacagcacactgaaagtgccatccattgaataattta
tcagtgcacaaaaatgaattataatagatgaagaactgaagatatggttc
agtggataacaggcttgccacacaactggaaagacttgaatttgaatccc
tggaagtcaagagagccgggaataatagtgtctatttgtaatgacaggat
ttccactgtgagctgggaatcagatacaagaaaatccctggaaactcttg
agtcagctagcctggcacagacagtggagaaaaagtataaaggcaggact
ggcttgcaaggtagtattctgatattcacacacattctgtagcatggatg
tgtacacatgtatatacatactctatgtatattcacagataaagtgataa
aatttaaagaaacctacaaataaaaaaatattgagttttgtgcctctcaa
aatgaatgtgaattacaaaggaaaatatataagaaggtgtaattattaca
aattgaaaattcattgtcctctcttacaggaattagttcctaggtggatc
actgactcactgttccctataagagaggcaatgccttatcatggggtaga
ttttaaataattagcaggatgattcacacacatcaacacctaagcaccta
cttcaaaggaaacgagtagagtgaatccctggccaaactagggtcgggct
gaaataatagcagaaaaagagatgagtgagagacagaaagcagccagaat
gaaagcttgcagatctttatctgctcttgaactcctccaaagttggtgca
gcttcacagcagagaggtcatgggaaccaaggattcgtaagatcatgcta
acagagaccacgacattgcaaggatccagcggtggctgggtcaatgcttt
agcatggaaacagcaatccttctttccaagaaattctgaaaga

gaattctctcttttgtttctaatttcactaatattcttttttttgatgat
ttatatctgtataacttaaacattggaaaaagtgttttaataataaacaa
attgtctatttttcaaatctggatcactgttctttaatataggaagactt
tccgtctgtttaacaggtttcacgggacatcttagagagtgtgtttcaga
aatatgaatgtaagatcagtcctagcacatagagaaatagatcttgaatg
attacattttgaacatatatttaagtaattatttgtttgataatttttat
atatctcatttgctattgatttaattttcatatcataaacacagtaaagt
aaaattatttacattaaaaacaaacctaatagaaaaattaaagcttttta
atggtactaaatttctaagactatggcatttttgtgcaagatagttttta
ttgtgaattgatttgttcaattattaaatgccacaaaatttataacaatc
aagcttactattgaagaatacattatactttgactcaatttcagtatgga
tctaactcaatttactaataatcaacttgctaataatctaatcgttcagt
ttgtaaatggtagatatagaagctaaactaattcatcagtcaatttggaa
ttttaatattatttttaagagtttcatgtaaataaatggctcaatatttt
agcggggatctagctagagcctgggtgcaagaaggcctatgtctgctctg
ttatatgattaaccaaggatgcagattaggttctcaaggaagtacatcat
ggaataaagatgaacaatctggtaatgttttagaaattactcttgtacta
tgtaggtgaaggttaggaagaaatacaagagaaaacaaggcataaagaag
atgcagtaatcaggaatgccacattctccagagagctccaaattggatgt
cccttaaaagtagtcagagtcctgatactgtgactgcatcaccttgtcaa
tagcaactcatgaaggggatgttgtcttcctacaaaaatgagttcccaag
ctgaagaatcatttctcttacaaaactccagtgctgaagaagagctgtgt
tggaatccttggcttctttacctccaagggactgaaccttagtagagaac
accagcatcaagggattgtgctttctatgagtataaccaaaaaggtttct
cagaagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_8724980_8726193
seq2: B6Ng01-216O05.b_45_1237 (reverse)

seq1  TCTTTCAGAATTTCTGTGGAAGAGAGGATGGGCTGTTTTTCATGCTAAAG  50
      ||||||||||||||| |||||   |||||  |||| ||| ||||||||||
seq2  TCTTTCAGAATTTCT-TGGAAAGAAGGAT-TGCTG-TTTCCATGCTAAAG  47

seq1  CACTGACCCAAGCCACCGCCTTGGATTCCTTTGCAATGTCTGTGGTCTCT  100
      || |||||| |||||||||  |||||  | |||||||||| |||||||||
seq2  CATTGACCC-AGCCACCGC--TGGAT--CCTTGCAATGTC-GTGGTCTCT  91

seq1  GTTTAGCATGATCTTACCGAATCCTTGGTATTCCCATGAACCTCTCTGCT  150
      | |||||||||||||| |||||||||||  |||||||| |||||||||||
seq2  G-TTAGCATGATCTTA-CGAATCCTTGG--TTCCCATG-ACCTCTCTGCT  136

seq1  GGTGAAGCTGCACCCAACCTTTGGAGAGTTTCAAGAGCAGAT-AAGATCT  199
       |||||||||||||  | ||||||||   ||||||||||||| |||||||
seq2  -GTGAAGCTGCACC--AACTTTGGAGGAGTTCAAGAGCAGATAAAGATCT  183

seq1  GCAAGCCTTTCATTCTGGCTTGCTTTCTGTCTCTCACTCATCCTCTTTTT  249
      ||||| ||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GCAAG-CTTTCATTCTGGC-TGCTTTCTGTCTCTCACTCAT-CTCTTTTT  230

seq1  TCCTGCTATTATTTCAGCCCGACCCTAGTTTGGCCAGGGATTCACTCTAC  299
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --CTGCTATTATTTCAGCCCGACCCTAGTTTGGCCAGGGATTCACTCTAC  278

seq1  TCGTTTCCTTTGAAGTAGGTGCTTAGGTGTTGATGTGTGTGAATCATCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTCCTTTGAAGTAGGTGCTTAGGTGTTGATGTGTGTGAATCATCCT  328

seq1  GCTAATTATTTAAAATCTACCCCATGATAAGGCATTGCCTCTCTTATAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTATTTAAAATCTACCCCATGATAAGGCATTGCCTCTCTTATAGG  378

seq1  GAACAGTGAGTCAGTGATCCACCTAGGAACTAATTCCTGTAAGAGAGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGAGTCAGTGATCCACCTAGGAACTAATTCCTGTAAGAGAGGAC  428

seq1  AATGAATTTTCAATTTGTAATAATTACACCTTCTTATATATTTTCCTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTTCAATTTGTAATAATTACACCTTCTTATATATTTTCCTTTG  478

seq1  TAATTCACATTCATTTTGAGAGGCACAAAACTCAATATTTTTTTATTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCACATTCATTTTGAGAGGCACAAAACTCAATATTTTTTTATTTGT  528

seq1  AGGTTTCTTTAAATTTTATCACTTTATCTGTGAATATACATAGAGTATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTTTAAATTTTATCACTTTATCTGTGAATATACATAGAGTATGT  578

seq1  ATATACATGTGTACACATCCATGCTACAGAATGTGTGTGAATATCAGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATGTGTACACATCCATGCTACAGAATGTGTGTGAATATCAGAAT  628

seq1  ACTACCTTGCAAGCCAGTCCTGCCTTTATACTTTTTCTCCACTGTCTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTTGCAAGCCAGTCCTGCCTTTATACTTTTTCTCCACTGTCTGTG  678

seq1  CCAGGCTAGCTGACTCAAGAGTTTCCAGGGATTTTCTTGTATCTGATTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTAGCTGACTCAAGAGTTTCCAGGGATTTTCTTGTATCTGATTCC  728

seq1  CATCTCACAGTGGAAATCCTGTCATTACAAATAGACACTATTATTCCCGG  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACAGTGGAAATCCTGTCATTACAAATAGACACTATTATTCCCGG  778

seq1  CTCTCTTGACTTCCAGGGATTCAAATTCAAGTCTTTCCAGTTGTGTGGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGACTTCCAGGGATTCAAATTCAAGTCTTTCCAGTTGTGTGGCA  828

seq1  AGCCTGTTATCCACTGAACCATATCTTCAGTTCTTCATCTATTATAATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTATCCACTGAACCATATCTTCAGTTCTTCATCTATTATAATTC  878

seq1  ATTTTTGTGCACTGATAAATTATTCAATGGATGGCACTTTCAGTGTGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGCACTGATAAATTATTCAATGGATGGCACTTTCAGTGTGCTG  928

seq1  TCCCTGATTCCAAGGTTTAAAAAGCAGTTGTGTTCACTATTGTAACATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATTCCAAGGTTTAAAAAGCAGTTGTGTTCACTATTGTAACATTT  978

seq1  TTCTCTGATATTTGAAGTGTAAAGTTTGCTTTTGGAGCATGCTTATAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGATATTTGAAGTGTAAAGTTTGCTTTTGGAGCATGCTTATAAAA  1028

seq1  AATCATTAAAACAACATTGCTGGGAATATCAAACCTTCCAAATGCATAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAAAACAACATTGCTGGGAATATCAAACCTTCCAAATGCATAAA  1078

seq1  ACAAAAATATTGTGGCTGCACTCAAAAAGAACTAGTGCTCTTTATGTTTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATATTGTGGCTGCACTCAAAAAGAACTAGTGCTCTTTATGTTTG  1128

seq1  TTTTGAGTGGTTAGTACACACGAGAGCCCTGTGGAATATTGAAACCAGAG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTGGTTAGTACACACGAGAGCCCTGTGGAATATTGAAACCAGAG  1178

seq1  TGTGGTTTGGAATTC  1214
      |||||||||||||||
seq2  TGTGGTTTGGAATTC  1193


seq1: chr2_8668413_8669608
seq2: B6Ng01-216O05.g_64_1272

seq1  GAATTCTCTCTTTTGTTTCTAATTTCACTAATATTCTTTTTTTTGATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTTTGTTTCTAATTTCACTAATATTCTTTTTTTTGATGAT  50

seq1  TTATATCTGTATAACTTAAACATTGGAAAAAGTGTTTTAATAATAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTGTATAACTTAAACATTGGAAAAAGTGTTTTAATAATAAACAA  100

seq1  ATTGTCTATTTTTCAAATCTGGATCACTGTTCTTTAATATAGGAAGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTATTTTTCAAATCTGGATCACTGTTCTTTAATATAGGAAGACTT  150

seq1  TCCGTCTGTTTAACAGGTTTCACGGGACATCTTAGAGAGTGTGTTTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTGTTTAACAGGTTTCACGGGACATCTTAGAGAGTGTGTTTCAGA  200

seq1  AATATGAATGTAAGATCAGTCCTAGCACATAGAGAAATAGATCTTGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAATGTAAGATCAGTCCTAGCACATAGAGAAATAGATCTTGAATG  250

seq1  ATTACATTTTGAACATATATTTAAGTAATTATTTGTTTGATAATTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTTGAACATATATTTAAGTAATTATTTGTTTGATAATTTTTAT  300

seq1  ATATCTCATTTGCTATTGATTTAATTTTCATATCATAAACACAGTAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCATTTGCTATTGATTTAATTTTCATATCATAAACACAGTAAAGT  350

seq1  AAAATTATTTACATTAAAAACAAACCTAATAGAAAAATTAAAGCTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTACATTAAAAACAAACCTAATAGAAAAATTAAAGCTTTTTA  400

seq1  ATGGTACTAAATTTCTAAGACTATGGCATTTTTGTGCAAGATAGTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACTAAATTTCTAAGACTATGGCATTTTTGTGCAAGATAGTTTTTA  450

seq1  TTGTGAATTGATTTGTTCAATTATTAAATGCCACAAAATTTATAACAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATTGATTTGTTCAATTATTAAATGCCACAAAATTTATAACAATC  500

seq1  AAGCTTACTATTGAAGAATACATTATACTTTGACTCAATTTCAGTATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTACTATTGAAGAATACATTATACTTTGACTCAATTTCAGTATGGA  550

seq1  TCTAACTCAATTTACTAATAATCAACTTGCTAATAATCTAATCGTTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCAATTTACTAATAATCAACTTGCTAATAATCTAATCGTTCAGT  600

seq1  TTGTAAATGGTAGATATAGAAGCTAAACTAATTCATCAGTCAATTTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATGGTAGATATAGAAGCTAAACTAATTCATCAGTCAATTTGGAA  650

seq1  TTTTAATATTATTTTTAAGAGTTTCATGTAAATAAATGGCTCAATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATTATTTTTAAGAGTTTCATGTAAATAAATGGCTCAATATTTT  700

seq1  AGCGGGGATCTAGCTAGAGCCTGGGTGCAAGAAGGCCTATGTCTGCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGGATCTAGCTAGAGCCTGGGTGCAAGAAGGCCTATGTCTGCTCTG  750

seq1  TTATATGATTAACCAAGGATGCAGATTAGGTTCTCAAGGAAGTACATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGATTAACCAAGGATGCAGATTAGGTTCTCAAGGAAGTACATCAT  800

seq1  GGAATAAAGATGAACAATCTGGTAATGTTTTAGAAATTACTCTTGTACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAAGATGAACAATCTGGTAATGTTTTAGAAATTACTCTTGTACTA  850

seq1  TGTAGGTGAAGGTTAGGAAGAAATACAAGAG-AAACAAGGCATAAAGAAG  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTAGGTGAAGGTTAGGAAGAAATACAAGAGAAAACAAGGCATAAAGAAG  900

seq1  ATGCAGTAATCAGGGAATGCCACATTCTCCAGAGAGCTCCAAAATTGGAT  949
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  ATGCAGTAATCA-GGAATGCCACATTCTCCAGAGAGCTCC-AAATTGGAT  948

seq1  GTCCCTTAAAAGTAGTCAAGAGTCCTGGATACTGTGACTGCATCACCTTG  999
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  GTCCCTTAAAAGTAGTC-AGAGTCCT-GATACTGTGACTGCATCACCTTG  996

seq1  TC-ATAGCACCTCCATG-AGGGGATGTTGTC-TCCTACAAAAATGAGGTC  1046
      || |||||| || |||| ||||||||||||| ||||||||||||||| ||
seq2  TCAATAGCAACT-CATGAAGGGGATGTTGTCTTCCTACAAAAATGAGTTC  1045

seq1  CCAAGCTGA--GATCATTTCCTCTACAAAACT-CAGTGCTGAAAGAAGAG  1093
      |||||||||   ||||||||   ||||||||| |||||||| ||||||||
seq2  CCAAGCTGAAGAATCATTTCTCTTACAAAACTCCAGTGCTG-AAGAAGAG  1094

seq1  C--TGTTGGAATCCTTGG-TTCTTTACCT-CAAAGGACAGA--CTTAGTA  1137
      |  ||||||||||||||| |||||||||| ||| |||| ||  |||||||
seq2  CTGTGTTGGAATCCTTGGCTTCTTTACCTCCAAGGGACTGAACCTTAGTA  1144

seq1  GAGACACA-CAGCATCAAGGGAATGTGGTTTTCTATGGATA-AACCAAAA  1185
      |||| ||| ||||||||||||| ||| | ||||||||  || ||||||||
seq2  GAGA-ACACCAGCATCAAGGGATTGT-GCTTTCTATGAGTATAACCAAAA  1192

seq1  --GTTTC----AAGATG  1196
        |||||    ||||||
seq2  AGGTTTCTCAGAAGATG  1209


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