BAC Information

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BAC

Clone NameB6Ng01-216P10
Chromosome2 (Build37)4 (Build37)
Map Location 131,249,789 - 131,249,84616,975,923 - 16,976,810
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneA930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463
Downstream geneSmox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216P10.bB6Ng01-216P10.g
ACCGA033511GA033512
length724890
definitionB6Ng01-216P10.b B6Ng01-216P10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,249,789 - 131,249,846)(16,975,923 - 16,976,810)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
tttcgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccattcgtcaattctccatcttacagcaaaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatatgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgatttgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattcc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttttttttttttttttttttttccattttttattaggtatttagc
tcatttacatttcccattgctata
gaattcattgttttaaattgctgagtagttcataacagccttatttataa
tagccagaagttggaaagaacccagatgtccctcaacagaggaatgaata
cagaaaatgtggtacatttacacaatggagtactactcagaaattaattt
ttaatagaagaaaattttagtataagatacagaaaaatcctatatggaac
taaaaaggatttaatgtaatttttgaaaccatgccaaaaagaaaaaagaa
aaacatagtcataaaattataaaataagtgtattaagttctattatcctc
agcatttgtcagtcaggaaacatatgtaaggctacacagaaactctttcc
taatatcccttcaggaaataaaatgctgaactatctttagcagaactttg
taataattttagttaaataaaataacaggataggaaaagacaattcaata
aaatagtcctcaaatacactaaatgatgctgtaaaaaaaatcacacaatt
ttagactatctgaatttactaaacaataaaagttagaacctttggaggtt
tagttatgtggcagaaagtttaagacagtctctaaaatgtgtattatttt
cagcatcctgggcctacatatttctgagcagcaaacactcacgatagtaa
atgtttgattagattcattataatggattctacttggatgaaattaagct
atatcatttcagacatagtttcttagaaaaggaaaaaatggaaagggaat
ctctaattaaaaagggaaagaggaaggtcaatccaggagacagagctgca
aagtgatttcataaatcctaaagtaaatgaattactttatattttcctaa
aattatatatatatatatatatatatgtatatatgtatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131249789_131249846
seq2: B6Ng01-216P10.b_709_767 (reverse)

seq1  ATGGGAAATGTAAATGAGGAAAATACCTAAAAAAAAA---AAAAAAAAAA  47
      ||||||||||||||||||  |||||||||| ||||||   ||||||||||
seq2  ATGGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAAA  50

seq1  AACCAAAAAAA  58
      ||  |||||||
seq2  AA--AAAAAAA  59

seq1: chr4_16975923_16976810
seq2: B6Ng01-216P10.g_65_954 (reverse)

seq1  ATATACATATATACATATATATATATATATATATATAATTTTAGGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATATACATATATATATATATATATATATAATTTTAGGAAAAT  50

seq1  ATAAAGTAATTCATTTACTTTAGGATTTATGAAATCACTTTGCAGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAATTCATTTACTTTAGGATTTATGAAATCACTTTGCAGCTCTG  100

seq1  TCTCCTGGATTGACCTTCCTC-TTCCCTTTTTAATTAGAGATTCCC-TTC  148
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TCTCCTGGATTGACCTTCCTCTTTCCCTTTTTAATTAGAGATTCCCTTTC  150

seq1  CATTTTTTCCTTTTCTAAGAAACTATGTCTGAAATGATATAGCTTAATTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTCCTTTTCTAAGAAACTATGTCTGAAATGATATAGCTTAATTT  200

seq1  CATCCAAGTAGAATCCATTATAATGAATCTAATCAAACATTTACTATCGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGTAGAATCCATTATAATGAATCTAATCAAACATTTACTATCGT  250

seq1  GAGTGTTTGCTGCTCAGAAATATGTAGGCCCAGGATGCTGAAAATAATAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTGCTGCTCAGAAATATGTAGGCCCAGGATGCTGAAAATAATAC  300

seq1  ACATTTTAGAGACTGTCTTAAACTTTCTGCCACATAACTAAACCTCCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAGAGACTGTCTTAAACTTTCTGCCACATAACTAAACCTCCAAA  350

seq1  GGTTCTAACTTTTATTGTTTAGTAAATTCAGATAGTCTAAAATTGTGTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAACTTTTATTGTTTAGTAAATTCAGATAGTCTAAAATTGTGTGA  400

seq1  TTTTTTTTACAGCATCATTTAGTGTATTTGAGGACTATTTTATTGAATTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTACAGCATCATTTAGTGTATTTGAGGACTATTTTATTGAATTG  450

seq1  TCTTTTCCTATCCTGTTATTTTATTTAACTAAAATTATTACAAAGTTCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTATCCTGTTATTTTATTTAACTAAAATTATTACAAAGTTCTG  500

seq1  CTAAAGATAGTTCAGCATTTTATTTCCTGAAGGGATATTAGGAAAGAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGATAGTTCAGCATTTTATTTCCTGAAGGGATATTAGGAAAGAGTT  550

seq1  TCTGTGTAGCCTTACATATGTTTCCTGACTGACAAATGCTGAGGATAATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGCCTTACATATGTTTCCTGACTGACAAATGCTGAGGATAATA  600

seq1  GAACTTAATACACTTATTTTATAATTTTATGACTATGTTTTTCTTTTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAATACACTTATTTTATAATTTTATGACTATGTTTTTCTTTTTTC  650

seq1  TTTTTGGCATGGTTTCAAAAATTACATTAAATCCTTTTTAGTTCCATATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCATGGTTTCAAAAATTACATTAAATCCTTTTTAGTTCCATATA  700

seq1  GGATTTTTCTGTATCTTATACTAAAATTTTCTTCTATTAAAAATTAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTCTGTATCTTATACTAAAATTTTCTTCTATTAAAAATTAATTT  750

seq1  CTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATTCATTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATTCATTCC  800

seq1  TCTGTTGAGGGACATCTGGGTTCTTTCCAACTTCTGGCTATTATAAATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAGGGACATCTGGGTTCTTTCCAACTTCTGGCTATTATAAATAA  850

seq1  GGCTGTTATGAACTACTCAGCAATTTAAAACAATGAATTC  888
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTATGAACTACTCAGCAATTTAAAACAATGAATTC  890