BAC Information

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BAC

Clone NameB6Ng01-217D05
Chromosome2 (Build37)
Map Location 88,972,297 - 89,131,183
singlet/doubletdoublet
Overlap geneOlfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229
Upstream geneOlfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222
Downstream geneOlfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217D05.bB6Ng01-217D05.g
ACCGA033676GA033677
length1,1281,008
definitionB6Ng01-217D05.b B6Ng01-217D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,972,297 - 88,973,432)(89,130,172 - 89,131,183)
sequence
gaattcactcagtgatttaagtcacactttttgagcattagtgtcttctc
ctgtgttatgtgctaagtttgtacttgtgaaaacagcctgtttatttgct
atcaataactatgaagcatgcaagagcattttaattaccatgttttaata
tatgcattctttaaacaacttcaaatcataccagctttaaatgcaaatgt
tatatttatgagtctatgaacatataaattaacatgtattcagaaaaaga
aagatttttgaagagataaaagtcttgtatcatatttctgagttgtttgg
ttcccatttgaagatgaaacatttaaactatgtttaatactgtaaaactt
gagaaataaaataggaatgaaatagaacttccttggacagaagaaaatag
aaagaatagactaaaagaaggaggagaggaaggaaatgagtttgtactat
aataacatttatttgagccctgtgaccacttgagcaattattcactgtgg
agtgcttttctgtggtctcattttattcacctcagaaccactgacactga
tcacacaatctctgtaatggaagcaatgaacaccaggattattgctactc
tcaagaacagttatacaatgaacagatcatgactatattaaatgttacac
tttatcacaatttagaaatcatctctgaaagtgaaataatgtgcttcata
cacctcaccatgtgttaattgtgggaaaaatttgaagaccgacatccttt
ataatctgtggtcagttgtccactcagtagtagtcaagattatcagtttg
tttccagcgtgtacttccacatctaaaggaagcagagagcacctctggca
gtgagggtgaacgatgttatctcttctgctcaagtgttctactcatcgtg
gtttgcaaaacaaataaaaccgaagaatccaaaattcccttacagagtgc
atctggaatttaaagaggtttctaccagacagtatgagtctgtgaaacta
attcttagatccccaggatttgtaaatttttgtcccatgagaatccagca
taccattgtatatctctctctaatgtgtatgtatagtgcctcttgtctaa
tcaaatcatgctgtgttttttattaatt
gaattctatagaacaaaataaattacagaggaatgagaatatctctctgt
ggaaacttactatgtattttttcatgatataaatgatggtgagagatttt
cagttagtgggaaagtgttggtattggataaagtttaaaataattaatgg
ctctctcttcacttacagtttctttctttctttctttctttctttctttc
tgtcttttttctttctctctctctttctttctttttctttttttttcttt
tctttacttcttcttttttttgaaaaggaaagtagatttattcacttgac
tatattggaaagagaggcagagatccagtcacctccttaagcccatccac
ctccaggttcctgatatggtgtttaatcagaaagcaaaagatctgtgtaa
ctaagctacccattcagaatgtagtccctagaccactgctgtctaagctc
caagtctccctggcaaggtcatctgacaagttgtcagtaatttacaagag
ataacttactcttcttccccgtgacttcggacttctttttctccagcaag
tgattcttggggtccatccgtttcatagtctgaaagcttaagagtgtctc
tatgaagtatatccatccctgtcggataggcagttgcaatcgaaggggaa
ccaatatggtggagattaagcaggcaagttccaaagggggtaacagtgag
agaacaggagcccacttactcttgaggaatcccagaagaaactggtatca
ccatcaagagaagagggtcaagtgctgggctccatgagggacacgatgcc
cagaatttccacagatattgttagacctgaagtcacctagttcccctgcc
caagtctgtcttgattccctgttcccaattcatttgtcaagggtatccct
gtataaactgtacagatgttccaacaggtaagaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaaggaccagat
gcccctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_88972297_88973432
seq2: B6Ng01-217D05.b_43_1170

seq1  GAATTCACTCAGTGATTTAAGTCACACTTTTTGAGCATTAGTGTCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGTGATTTAAGTCACACTTTTTGAGCATTAGTGTCTTCTC  50

seq1  CTGTGTTATGTGCTAAGTTTGTACTTGTGAAAACAGCCTGTTTATTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTATGTGCTAAGTTTGTACTTGTGAAAACAGCCTGTTTATTTGCT  100

seq1  ATCAATAACTATGAAGCATGCAAGAGCATTTTAATTACCATGTTTTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAACTATGAAGCATGCAAGAGCATTTTAATTACCATGTTTTAATA  150

seq1  TATGCATTCTTTAAACAACTTCAAATCATACCAGCTTTAAATGCAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTCTTTAAACAACTTCAAATCATACCAGCTTTAAATGCAAATGT  200

seq1  TATATTTATGAGTCTATGAACATATAAATTAACATGTATTCAGAAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATGAGTCTATGAACATATAAATTAACATGTATTCAGAAAAAGA  250

seq1  AAGATTTTTGAAGAGATAAAAGTCTTGTATCATATTTCTGAGTTGTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTGAAGAGATAAAAGTCTTGTATCATATTTCTGAGTTGTTTGG  300

seq1  TTCCCATTTGAAGATGAAACATTTAAACTATGTTTAATACTGTAAAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTGAAGATGAAACATTTAAACTATGTTTAATACTGTAAAACTT  350

seq1  GAGAAATAAAATAGGAATGAAATAGAACTTCCTTGGACAGAAGAAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAAAATAGGAATGAAATAGAACTTCCTTGGACAGAAGAAAATAG  400

seq1  AAAGAATAGACTAAAAGAAGGAGGAGAGGAAGGAAATGAGTTTGTACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAGACTAAAAGAAGGAGGAGAGGAAGGAAATGAGTTTGTACTAT  450

seq1  AATAACATTTATTTGAGCCCTGTGACCACTTGAGCAATTATTCACTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATTTATTTGAGCCCTGTGACCACTTGAGCAATTATTCACTGTGG  500

seq1  AGTGCTTTTCTGTGGTCTCATTTTATTCACCTCAGAACCACTGACACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTCTGTGGTCTCATTTTATTCACCTCAGAACCACTGACACTGA  550

seq1  TCACACAATCTCTGTAATGGAAGCAATGAACACCAGGATTATTGCTACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAATCTCTGTAATGGAAGCAATGAACACCAGGATTATTGCTACTC  600

seq1  TCAAGAACAGTTATACAATGAACAGATCATGACTATATTAAATGTTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACAGTTATACAATGAACAGATCATGACTATATTAAATGTTACAC  650

seq1  TTTATCACAATTTAGAAATCATCTCTGAAAGTGAAATAATGTGCTTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACAATTTAGAAATCATCTCTGAAAGTGAAATAATGTGCTTCATA  700

seq1  CACCTCACCATGTGTTAATTGTGGGAAAAATTTGAAGACCGACATCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACCATGTGTTAATTGTGGGAAAAATTTGAAGACCGACATCCTTT  750

seq1  ATAATCTGTGGTCAGTTGTCCACTCAGTAGTAGTCAAGATTATCAGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGTGGTCAGTTGTCCACTCAGTAGTAGTCAAGATTATCAGTTTG  800

seq1  TTTCCAGCGTGTACTTCCACATCTAAAGGAAGCAGGAGAGCACCTCTGGC  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTCCAGCGTGTACTTCCACATCTAAAGGAAGCA-GAGAGCACCTCTGGC  849

seq1  AGTGAGGGTGAACGATGTTATCTCTTCTGCTCAAGTGTTCTACTCATCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGTGAACGATGTTATCTCTTCTGCTCAAGTGTTCTACTCATCGT  899

seq1  GG-TTGCAAAACAAATAAAACCGAAGAATCCAAAATT-CCTTACAGAGTG  948
      || |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTTTGCAAAACAAATAAAACCGAAGAATCCAAAATTCCCTTACAGAGTG  949

seq1  CATCTGGAATTTAAAGAGGTTTCTACCAGACAGTATGAGTCTGTGAAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAATTTAAAGAGGTTTCTACCAGACAGTATGAGTCTGTGAAACT  999

seq1  AATTCTTAGATCCCCCAGGATTTGTAAAATTTTTGGTCCCATGAGAATCC  1048
      ||||||||||| ||||||||||||||||  |||| |||||||||||||||
seq2  AATTCTTAGAT-CCCCAGGATTTGTAAA--TTTTTGTCCCATGAGAATCC  1046

seq1  AGCATACCATTTGTATATCTTCTCTCTTAATTGTGTATGTATAGTGCTTC  1098
      ||||||||| ||||||||| |||||||  | |||||||||||||||| ||
seq2  AGCATACCA-TTGTATATC-TCTCTCT--AATGTGTATGTATAGTGCCTC  1092

seq1  TTTGTCTAATCAAAATCATGCTGTGTTTTTATTTAATT  1136
       |||||||||| ||||||||||||||||||  ||||||
seq2  -TTGTCTAATC-AAATCATGCTGTGTTTTTTATTAATT  1128

seq1: chr2_89130172_89131183
seq2: B6Ng01-217D05.g_67_1074 (reverse)

seq1  TGAGGGGCATCTGGGTCCTTTCCAGCTTCTGGCTATTATAAATAAGGCTG  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCATCT-GGTCCTTTCCAGCTTCTGGCTATTATAAATAAGGCTG  49

seq1  CTATGAACATAGTGGAGCATGTGTCCTTCTTACCTGTTGGAACATCTGTA  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTATGAACATAGTGGAGCATGTGTCC-TCTTACCTGTTGGAACATCTGTA  98

seq1  CAGTTTATACAGGGATACCCTTGACAAAATGAATTGGGAACAGGGAATCA  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGTTTATACAGGGATACCCTTGAC-AAATGAATTGGGAACAGGGAATCA  147

seq1  AGAACAGACTTGGGCAGGGGAACTAGGTGACTTCAGGTCTTACAATATCT  200
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AG-ACAGACTTGGGCAGGGGAACTAGGTGACTTCAGGTCTAACAATATCT  196

seq1  GTGGAAATTCTGGGCATCGTGTCCCTCATGGAGCCCAGCACTTGACCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATTCTGGGCATCGTGTCCCTCATGGAGCCCAGCACTTGACCCTC  246

seq1  TTCTCTTGATGGTGATACCAGTTTCTTCTGGGATTCCTCAAGAGTAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGATGGTGATACCAGTTTCTTCTGGGATTCCTCAAGAGTAAGTG  296

seq1  GGCTCCTGTTCTCTCACTGTTACCCCCTTTGGAACTTGCCTGCTTAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGTTCTCTCACTGTTACCCCCTTTGGAACTTGCCTGCTTAATCT  346

seq1  CCACCATATTGGTTCCCCTTCGATTGCAACTGCCTATCCGACAGGGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATATTGGTTCCCCTTCGATTGCAACTGCCTATCCGACAGGGATGG  396

seq1  ATATACTTCATAGAGACACTCTTAAGCTTTCAGACTATGAAACGGATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTCATAGAGACACTCTTAAGCTTTCAGACTATGAAACGGATGGA  446

seq1  CCCCAAGAATCACTTGCTGGAGAAAAAGAAGTCCGAAGTCACGGGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGAATCACTTGCTGGAGAAAAAGAAGTCCGAAGTCACGGGGAAGA  496

seq1  AGAGTAAGTTATCTCTTGTAAATTACTGACAACTTGTCAGATGACCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGTTATCTCTTGTAAATTACTGACAACTTGTCAGATGACCTTGC  546

seq1  CAGGGAGACTTGGAGCTTAGACAGCAGTGGTCTAGGGACTACATTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGACTTGGAGCTTAGACAGCAGTGGTCTAGGGACTACATTCTGAA  596

seq1  TGGGTAGCTTAGTTACACAGATCTTTTGCTTTCTGATTAAACACCATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGCTTAGTTACACAGATCTTTTGCTTTCTGATTAAACACCATATC  646

seq1  AGGAACCTGGAGGTGGATGGGCTTAAGGAGGTGACTGGATCTCTGCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTGGAGGTGGATGGGCTTAAGGAGGTGACTGGATCTCTGCCTCT  696

seq1  CTTTCCAATATAGTCAAGTGAATAAATCTACTTTCCTTTTCAAAAAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAATATAGTCAAGTGAATAAATCTACTTTCCTTTTCAAAAAAAAG  746

seq1  AAGAAGTAAAGAAAAGAAAAAAAAAGAAAAAGAAAGAAAGAGAGAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAAAGAAAAGAAAAAAAAAGAAAAAGAAAGAAAGAGAGAGAGAA  796

seq1  AGAAAAAAGACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACTGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAGACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAACTGTAA  846

seq1  GTGAAGAGAGAGCCATTAATTATTTTAAACTTTATCCAATACCAACACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGAGAGCCATTAATTATTTTAAACTTTATCCAATACCAACACTT  896

seq1  TCCCACTAACTGAAAATCTCTCACCATCATTTATATCATGAAAAAATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTAACTGAAAATCTCTCACCATCATTTATATCATGAAAAAATACA  946

seq1  TAGTAAGTTTCCACAGAGAGATATTCTCATTCCTCTGTAATTTATTTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTTTCCACAGAGAGATATTCTCATTCCTCTGTAATTTATTTTGT  996

seq1  TCTATAGAATTC  1012
      ||||||||||||
seq2  TCTATAGAATTC  1008