BAC Information

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BAC

Clone NameB6Ng01-217G17
Chromosome2 (Build37)
Map Location 132,471,525 - 132,619,560
singlet/doubletdoublet
Overlap geneLOC383801, LOC668906, Chgb
Upstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781
Downstream gene3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217G17.bB6Ng01-217G17.g
ACCGA033836GA033837
length1,0451,101
definitionB6Ng01-217G17.b B6Ng01-217G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,471,525 - 132,472,567)(132,618,478 - 132,619,560)
sequence
gaattccagaagattgaatctccgagtttaaggaacacacctttaatctg
ggctacgcctttcatctgggattaaaggtgtggtggaacacacctttaat
ctgggctacaccttctgctggagacaatataaggacattggaagaaggga
gtctagctcttgctcctgctccttcgcctgcttgctacgtgagactgagt
aactgctagatccttggacttccattcacagctgcgactgaacaattgtt
gggaattgggctgccgactgtaagtaatcaataaattcctttactatcta
gagactatccataagttctgtgactctagagaaccctgactaatacaccc
gccatgatgacaatggactaaagctctgaaactgtaagccagactcaatt
acatgattgtcttataagtattgccttggacatggtgtttcttcacagca
ataaagtccgaattaacacagacagacagatacgtaacacatacacacac
acagagagagagaagaaacagaaagacagacagagacagagacaggcatt
cagacagacaaggagacagacagagctagtataataccacactgacctac
aagtagagattcttggtcaaaattttcaagaattctttctaaaacacaaa
gacctctttctgtatttcatggtatttatgttcatttctaatactgttcc
tggcttagagtctttgcttttctgctgatgtggctgctgagagaactcta
tgctggcttttaacaaccccagttccatcccttccccacccttgaagaac
tggagaaattccagaatgtcattggcatttctaacactgtctcttgcaat
tgtcatctctggaatactgatgtaagatttcagctacaatttctacagtg
gaaatcccaccggtggaataataaatggaacagacagggactaaaagaat
tctatttgtttgctaagatacttaaggggacaagctattttgtgcaccct
gcttgaatggacttgcatctagccttcatcttcattgccaggaag
gaattcttctcagtcaaggtcaccccatttctgtcttcaccttcatcctc
aagaaaactgtcatctgggttgcctcttttctcaaagtcactattcttcc
actggagagggtcaaagtacgggttgaacagcgcccctaacctcttcctc
ttttcagtgatgggatagggctcatattgtctgtctggaaaccttacttc
ctccctgctttcttccggtcctagctgctcttcctgctgccaccatctcc
cttggtccccttcctcgccatagttgaggtagtttttctcctgctcttgc
catttgctttgtgggtacctttttgccgtatctattgggctttcgcgaac
agggtagtgcccttcatccaagagccttttttcttctctggtgtcaagag
cagaatgggctcctggctcccgccccctgcctctgtgttggcgtccattt
gccccctcgtagctcctctcttcctcggtttcttcaccatgtctgtttgc
tgtgctttccagttcagagtcggggtggtttctcttatactccctttcct
gactctcctcactccgaggccttggggctctgtcctcttcgcttcctcta
ccccggtactgtagtccccgatagcttctcgattcttccccatattcagg
ttcttcttctgaagccctgtagtgagctagatggtgactccttttttccc
ctaaacggactgtggccacatctgcctccttggactccttgggagagggt
ctcctttcctcagatagaggatgcccttcgttaagaggacttgttggacc
cgcttctcccgtggtggtgttctgggcctgcgtttggtttacttcagagg
ctgagtcttcctcggccttcctcgacttcctcgcctttccttcacctttc
ctcgccttcctgggattctttcctggcttctggtcctggtcggtaagctc
ctggagtttctcctgcctcttgtctcctctcaactcttcttggctgcttt
gctccctactgtgttgtctctcctccagctccatggaagtgttgcatctt
gctcttgccactgaacttcatcttttttttttttaaccgaagccttcgct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_132471525_132472567
seq2: B6Ng01-217G17.b_46_1090

seq1  GAATTCCAGAAGATTGAATCTCCGAGTTTAAGGAACACACCTTTAATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGATTGAATCTCCGAGTTTAAGGAACACACCTTTAATCTG  50

seq1  GGCTACGCCTTTCATCTGGGATTAAAGGTGTGGTGGAACACACCTTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACGCCTTTCATCTGGGATTAAAGGTGTGGTGGAACACACCTTTAAT  100

seq1  CTGGGCTACACCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTACACCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGA  150

seq1  GTCTAGCTCTTGCTCCTGCTCCTTCGCCTGCTTGCTACGTGAGACTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCTCTTGCTCCTGCTCCTTCGCCTGCTTGCTACGTGAGACTGAGT  200

seq1  AACTGCTAGATCCTTGGACTTCCATTCACAGCTGCGACTGAACAATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTAGATCCTTGGACTTCCATTCACAGCTGCGACTGAACAATTGTT  250

seq1  GGGAATTGGGCTGCCGACTGTAAGTAATCAATAAATTCCTTTACTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGGGCTGCCGACTGTAAGTAATCAATAAATTCCTTTACTATCTA  300

seq1  GAGACTATCCATAAGTTCTGTGACTCTAGAGAACCCTGACTAATACACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATCCATAAGTTCTGTGACTCTAGAGAACCCTGACTAATACACCC  350

seq1  GCCATGATGACAATGGACTAAAGCTCTGAAACTGTAAGCCAGACTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATGACAATGGACTAAAGCTCTGAAACTGTAAGCCAGACTCAATT  400

seq1  ACATGATTGTCTTATAAGTATTGCCTTGGACATGGTGTTTCTTCACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTGTCTTATAAGTATTGCCTTGGACATGGTGTTTCTTCACAGCA  450

seq1  ATAAAGTCCGAATTAACACAGACAGACAGATACGTAACACATACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTCCGAATTAACACAGACAGACAGATACGTAACACATACACACAC  500

seq1  ACAGAGAGAGAGAAGAAACAGAAAGACAGACAGAGACAGAGACAGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGAGAAGAAACAGAAAGACAGACAGAGACAGAGACAGGCATT  550

seq1  CAGACAGACAAGGAGACAGACAGAGCTAGTATAATACCACACTGACCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAAGGAGACAGACAGAGCTAGTATAATACCACACTGACCTAC  600

seq1  AAGTAGAGATTCTTGGTCAAAA-TTTCAAGAATTC-TTCTAAAACACAAA  648
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  AAGTAGAGATTCTTGGTCAAAATTTTCAAGAATTCTTTCTAAAACACAAA  650

seq1  GACCTCTTTCTGTA-TTCATGGTATTTATGTTCA-TTCTAATACTGTTCC  696
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  GACCTCTTTCTGTATTTCATGGTATTTATGTTCATTTCTAATACTGTTCC  700

seq1  TGGCTTAGAGTC-TTGC-TTTCTGCTGATGTGGCTGCTGAGAGAACTCTA  744
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  TGGCTTAGAGTCTTTGCTTTTCTGCTGATGTGGCTGCTGAGAGAACTCTA  750

seq1  TGCTGGC-TTTAACAACCCCAGTTCCATCCCTCCCCCACCC-TGAAGAAC  792
      ||||||| |||||||||||||||||||||||| |||||||| ||||||||
seq2  TGCTGGCTTTTAACAACCCCAGTTCCATCCCTTCCCCACCCTTGAAGAAC  800

seq1  TGGAGAAGATTCCAGAATGTCATTGGCATTTCTAACACTGTCTC-TGCAA  841
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  TGGAGAA-ATTCCAGAATGTCATTGGCATTTCTAACACTGTCTCTTGCAA  849

seq1  ATGTCATCTCTGGAATACATGATGTAAGATTTCAGCTACAATTTCTACAG  891
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGTCATCTCTGGAATAC-TGATGTAAGATTTCAGCTACAATTTCTACAG  898

seq1  TGGAAATCCCACC-GTGGAATAATTAAATGGAACAGACA-GGACTAAAAA  939
      ||||||||||||| ||||||||| ||||||||||||||| ||||| ||||
seq2  TGGAAATCCCACCGGTGGAATAA-TAAATGGAACAGACAGGGACT-AAAA  946

seq1  GAAATCTATTTGTTTGCAGAGAGACTTAAAGGGGACAAAGCTAATTTTTG  989
      ||| |||||||||||||  ||| |||| |||||||| ||||||  |||||
seq2  GAATTCTATTTGTTTGCTAAGATACTT-AAGGGGAC-AAGCTA--TTTTG  992

seq1  TGCAACCTGCTTGAAGTGACTTGCA-CTAGCCTTCAGTCTTTCATTGGCA  1038
      |||| ||||||||||  |||||||| |||||||||| || ||||||| ||
seq2  TGCACCCTGCTTGAATGGACTTGCATCTAGCCTTCA-TC-TTCATTGCCA  1040

seq1  GGGAG  1043
      || ||
seq2  GGAAG  1045

seq1: chr2_132618478_132619560
seq2: B6Ng01-217G17.g_67_1167 (reverse)

seq1  AAGCG-AGGCTTCCGCT---AAGAAAAAAGATGA--GTCAGTGGCCAGAG  44
      ||||| ||||||| | |   || |||||||||||   |||||||| ||||
seq2  AAGCGAAGGCTTCGGTTAAAAAAAAAAAAGATGAAGTTCAGTGGCAAGAG  50

seq1  C-AGATGC-ACAC-TCCATGGAGCTGGAGGAGAAGAC-ACACAGTAGGGA  90
      | |||||| |||| |||||||||||||||||| |||| ||||||||||||
seq2  CAAGATGCAACACTTCCATGGAGCTGGAGGAG-AGACAACACAGTAGGGA  99

seq1  GCAAAGCAGCC-AGGAGAGTGGAGAGGAGACAAGGAGGCAGGAGAAACCC  139
      ||||||||||| || ||||| |||||||||||| |||||||||||||| |
seq2  GCAAAGCAGCCAAGAAGAGTTGAGAGGAGACAA-GAGGCAGGAGAAACTC  148

seq1  CAGGAGCTTACCGACCAGGACCAG-AGCCAGG-AAGAATCCCAGGAAGGC  187
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  CAGGAGCTTACCGACCAGGACCAGAAGCCAGGAAAGAATCCCAGGAAGGC  198

seq1  GAGG-AAGGTGA--GGAAGGCGAGGAAGGCGAGGAAGG-CGAGGAAGACT  233
      |||| |||||||  | |||||||||||| ||||||||| |||||||||||
seq2  GAGGAAAGGTGAAGGAAAGGCGAGGAAGTCGAGGAAGGCCGAGGAAGACT  248

seq1  CAGCCTCTGAAGT-AACCAAACGCAGGCCCAG-ACACCACCACGGGAGAA  281
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  CAGCCTCTGAAGTAAACCAAACGCAGGCCCAGAACACCACCACGGGAGAA  298

seq1  GCGGGTCCAACAAGTCCTCTT-ACGAAGGGCATCCTCTATCTGAGGAAAG  330
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCGGGTCCAACAAGTCCTCTTAACGAAGGGCATCCTCTATCTGAGGAAAG  348

seq1  GAGACCCTCTCCCAAGGAGTCCAAGGAGGCAGATGTGGCCACAGTCCGTT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTCTCCCAAGGAGTCCAAGGAGGCAGATGTGGCCACAGTCCGTT  398

seq1  TAGGGGAAAAAAGGAGTCACCATCTAGCTCACTACAGGGCTTCAGAAGAA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAAAAAAGGAGTCACCATCTAGCTCACTACAGGGCTTCAGAAGAA  448

seq1  GAACCTGAATATGGGGAAGAATCGAGAAGCTATCGGGGACTACAGTACCG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGAATATGGGGAAGAATCGAGAAGCTATCGGGGACTACAGTACCG  498

seq1  GGGTAGAGGAAGCGAAGAGGACAGAGCCCCAAGGCCTCGGAGTGAGGAGA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAGGAAGCGAAGAGGACAGAGCCCCAAGGCCTCGGAGTGAGGAGA  548

seq1  GTCAGGAAAGGGAGTATAAGAGAAACCACCCCGACTCTGAACTGGAAAGC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAAAGGGAGTATAAGAGAAACCACCCCGACTCTGAACTGGAAAGC  598

seq1  ACAGCAAACAGACATGGTGAAGAAACCGAGGAAGAGAGGAGCTACGAGGG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAACAGACATGGTGAAGAAACCGAGGAAGAGAGGAGCTACGAGGG  648

seq1  GGCAAATGGACGCCAACACAGAGGCAGGGGGCGGGAGCCAGGAGCCCATT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGGACGCCAACACAGAGGCAGGGGGCGGGAGCCAGGAGCCCATT  698

seq1  CTGCTCTTGACACCAGAGAAGAAAAAAGGCTCTTGGATGAAGGGCACTAC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGACACCAGAGAAGAAAAAAGGCTCTTGGATGAAGGGCACTAC  748

seq1  CCTGTTCGCGAAAGCCCAATAGATACGGCAAAAAGGTACCCACAAAGCAA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCGCGAAAGCCCAATAGATACGGCAAAAAGGTACCCACAAAGCAA  798

seq1  ATGGCAAGAGCAGGAGAAAAACTACCTCAACTATGGCGAGGAAGGGGACC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAGAGCAGGAGAAAAACTACCTCAACTATGGCGAGGAAGGGGACC  848

seq1  AAGGGAGATGGTGGCAGCAGGAAGAGCAGCTAGGACCGGAAGAAAGCAGG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGATGGTGGCAGCAGGAAGAGCAGCTAGGACCGGAAGAAAGCAGG  898

seq1  GAGGAAGTAAGGTTTCCAGACAGACAATATGAGCCCTATCCCATCACTGA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTAAGGTTTCCAGACAGACAATATGAGCCCTATCCCATCACTGA  948

seq1  AAAGAGGAAGAGGTTAGGGGCGCTGTTCAACCCGTACTTTGACCCTCTCC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGAAGAGGTTAGGGGCGCTGTTCAACCCGTACTTTGACCCTCTCC  998

seq1  AGTGGAAGAATAGTGACTTTGAGAAAAGAGGCAACCCAGATGACAGTTTT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGAATAGTGACTTTGAGAAAAGAGGCAACCCAGATGACAGTTTT  1048

seq1  CTTGAGGATGAAGGTGAAGACAGAAATGGGGTGACCTTGACTGAGAAGAA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGATGAAGGTGAAGACAGAAATGGGGTGACCTTGACTGAGAAGAA  1098

seq1  TTC  1083
      |||
seq2  TTC  1101