BAC Information

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BAC

Clone NameB6Ng01-217P17
Chromosome2 (Build37)
Map Location 50,012,000 - 50,155,918
singlet/doubletdoublet
Overlap geneLypd6, 2010311D03Rik
Upstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
Downstream geneLOC666781, LOC227885, Rnd3, LOC666802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217P17.bB6Ng01-217P17.g
ACCGA034231GA034232
length362435
definitionB6Ng01-217P17.b B6Ng01-217P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,012,000 - 50,012,367)(50,155,478 - 50,155,918)
sequence
agccagagcccttaggatacaatcactttcctgaggcccatctgttgtca
accaagcctttcaacatactcctttggtggcactttatatccaagctata
atattgattgtaccttgttctttcccatgagaagaatttcagggctggag
agatggctcagaggttaagagaaccgactgctcctccagaggacctgagt
tcagttcccagcaaccacatggtggctcacaaccatctgtaatggcatct
gatgccctcttctggtgtgactgaagacaactacagtgtacttgtcatat
atatatatatatatatatatatatatatatatatatatatatatgtatat
atgtatatatgt

ttgctctttaggtggctaaatgtttccatcaaactccagaaggcaaggat
ccttttcttctgatgtgtccagacgttccctgactttctgttctgcccca
aagcaatataccattgttaggaggctgagactgaaggatcatcagttcaa
aaccagcaacaccgtgagacaataaagacagaaggaaggaaggaaggaag
gaaggaaggaaggaaggaaggaaggaaggaaggaaaaaggaagagaggac
aagaggaagacaggaaaggagatgcaggggaggagaaaggaaatggggag
aagagaaaaaagcaacaataataaagataatttgatacaaaaaaatttgc
cagggcgaggggtggggaggatatccaggagggcccccacccgatcagag
gagaagagaagggggaatgattgtgggaagggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50012000_50012367
seq2: B6Ng01-217P17.b_45_412

seq1  GAATTCAGCCAGAGCCCTTAGGATACAATCACTTTCCTGAGGCCCATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCAGAGCCCTTAGGATACAATCACTTTCCTGAGGCCCATCTG  50

seq1  TTGTCAACCAAGCCTTTCAACATACTCCTTTGGTGGCACTTTATATCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAACCAAGCCTTTCAACATACTCCTTTGGTGGCACTTTATATCCAA  100

seq1  GCTATAATATTGATTGTACCTTGTTCTTTCCCATGAGAAGAATTTCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATATTGATTGTACCTTGTTCTTTCCCATGAGAAGAATTTCAGGG  150

seq1  CTGGAGAGATGGCTCAGAGGTTAAGAGAACCGACTGCTCCTCCAGAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGATGGCTCAGAGGTTAAGAGAACCGACTGCTCCTCCAGAGGAC  200

seq1  CTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATG  250

seq1  GCATCTGATGCCCTCTTCTGGTGTGACTGAAGACAACTACAGTGTACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGATGCCCTCTTCTGGTGTGACTGAAGACAACTACAGTGTACTTG  300

seq1  TCATATATATATATATATATATATATATATATATATATATATATATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATATATATATATATATATATATATATATATATATATATATATAT  350

seq1  GTATATATGTATATATGT  368
      ||||||||||||||||||
seq2  GTATATATGTATATATGT  368


seq1: chr2_50155478_50155918
seq2: B6Ng01-217P17.g_66_506 (reverse)

seq1  TCACCCTTCCCACAATCCTTCCCCCTTCTCTTCTCCTCTGATCGGGTGGG  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCACCCTTCCCACAATCATTCCCCCTTCTCTTCTCCTCTGATCGGGTGGG  50

seq1  GGCCCTCCTGGATATCCTCCCCACCCCTCGCCCTGGCAAATTTTTTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCCTGGATATCCTCCCCACCCCTCGCCCTGGCAAATTTTTTTGTA  100

seq1  TCAAATTATCTTTATTATTGTTGCTTTTTTCTCTTCTCCCCATTTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATCTTTATTATTGTTGCTTTTTTCTCTTCTCCCCATTTCCTTT  150

seq1  CTCCTCCCCTGCATCTCCTTTCCTGTCTTCCTCTTGTCCTCTCTTCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCTGCATCTCCTTTCCTGTCTTCCTCTTGTCCTCTCTTCCTTT  200

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  250

seq1  CCTTCTGTCTTTATTGTCTCACGGTGTTGCTGGTTTTGAACTGATGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCTTTATTGTCTCACGGTGTTGCTGGTTTTGAACTGATGATCC  300

seq1  TTCAGTCTCAGCCTCCTAACAATGGTATATTGCTTTGGGGCAGAACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTCAGCCTCCTAACAATGGTATATTGCTTTGGGGCAGAACAGAA  350

seq1  AGTCAGGGAACGTCTGGACACATCAGAAGAAAAGGATCCTTGCCTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGAACGTCTGGACACATCAGAAGAAAAGGATCCTTGCCTTCTGG  400

seq1  AGTTTGATGGAAACATTTAGCCACCTAAAGAGCAAGAATTC  441
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGGAAACATTTAGCCACCTAAAGAGCAAGAATTC  441


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