BAC Information

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BAC

Clone NameB6Ng01-218A03
Chromosome2 (Build37)
Map Location 81,075,193 - 81,219,842
singlet/doubletdoublet
Overlap genenone
Upstream genePrdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218A03.bB6Ng01-218A03.g
ACCGA034251GA034252
length1,1801,148
definitionB6Ng01-218A03.b B6Ng01-218A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,218,677 - 81,219,842)(81,075,193 - 81,076,370)
sequence
gaattcacccacaggggcatgaaatacctgttacaactgattcttgatac
tcagaacataagcatgaaatggccctgttagcataatctatctgatcaaa
ctgtctccgtatagcttgaagccataatctcatagaaaaggggaggaggt
tcactataaacaacattgtaagcacataaatgtgctttttattctgaaat
tctgtgattgaaaattttggacatcagcatacttctattagccatgtttc
aaagataatgagaagttcattccttatcttttctgggtaatgcataaggt
ttgaatggtgtggctaagctaagttaatcctattatggcataaagtgaaa
aaatagtcacataaggacgactcagatgggtcaagccaaaaaccaaccaa
ccaaataaacaagcaaacaaacaaacaaaaaccacaagagagcagcacag
ctaaaaatccacaaaaagagctctattctagaatttttttaaacatttga
ggaataatttttgataataaaaccaatcacaatactatttaccccaaacc
taaaattttctcatcaccaagctaagcctccgtaccttatggaagatata
ggtttctcagccctttcttggtgagcagctcacacacatactataaaaac
acaattttaatttatgctatttattatagtatttatctctctatatgaca
gcttaattttattatgaacaatagaatatctaaatagatgcaccaaaata
tgtttatattaatgatgaaatatagataaacttagctggaagatactgag
gacatgtaaagtatagatgtcttaagtttatggatgggaagattaataca
ataacgatttaattttctattcattgacccataaatatattgttgctgca
tgtaaaatgctacaaggagttaaacaactcccatgatatattagaagtgc
atctggttatagtacccaacttaatatttcacaaatatgcacatacccat
taagttacctctataaatatgacaaagattttccatcaccactcaaaact
tctttccatgaccctttagggaaccacattctcagtcttatttccacctc
aaggagaaagaatccagtgtgccacctgcaccaacataaatcaaaaatgc
cttttccataaattttaattgaaatgcaat

gaattcaaccatgctagaatgttgtttaacaggtagaaatattaatgtca
ggactttagtaatcaaaaataattgttgtaacaaatatacagtgcaatta
ttttctactttatcacaaagaccattctgtcttttccttccatgagttag
aacattttaaaatatggattctagtatgttcttttcttatactggattta
ccactaattagtactagtctacttttacattatttattttaattttttat
atgaatgatgttttccctgcatgtctgtgtaccatgtgtatgccgggtgc
taaaaaatgtcagaagagggttttggttcccctggaagagaagttccaga
tggtttgagcaacgttgtggtgctgagagtcaaatcgaggtcttctggag
gcatagctggtgcttttaattggaaagccatctttctggctcagatttta
tttatttatttacttacttatttaaatataacctcacttgaagacatttt
ggaaggcactgtcctttttgtctctcagacacttcaatccgtgtttggta
tcttgcaaaatcacaacacagtcaacccctggagagacactatgcttttc
aactgtccttgagagagtgcttttgtcataagtagtcacaggagcctctc
agcatccttcatctttcatcctcaaagatggatgcttgcctttctctgct
cagggtgttgagatgttaccttgaatgctcttgagagaacatgtcccttt
ctgggtggctatatatcctggttcatttctcaaacgggagttttttacac
cctatataaagtacatactgttacaccttgaaaacccacttttcaaattc
agcaaccaatgcattgtatttgaggaaaaaataaatcaaaccatttaaaa
gatttccctgatccttctcagaaatgaaggggaggggctgggaaaggggc
agtttgagaggagtctggaagagatgggctgtgatcagatgtaagtgata
aataatcattatggaaataggaaatagaattctctattgtcctcccccta
ctttttgtattataatggtgcttctgtgactttcggttgcacctagagat
gtagaaactcttccacattgtttgcctagataaatctggaaacagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_81218677_81219842
seq2: B6Ng01-218A03.b_44_1223 (reverse)

seq1  ATTGCA-TTCATATAAAA-TTATGAAAAAGGCA-TTTTGATTTATGTT-G  46
      |||||| ||||  ||||| ||||| |||||||| |||||||||||||| |
seq2  ATTGCATTTCAATTAAAATTTATGGAAAAGGCATTTTTGATTTATGTTGG  50

seq1  TGCA-GTGGCACACT-GAT--CTTCTCCTTGA-GTGGAAAT-AGACTGAG  90
      |||| |||||||||| |||   |||||||||| |||||||| ||||||||
seq2  TGCAGGTGGCACACTGGATTCTTTCTCCTTGAGGTGGAAATAAGACTGAG  100

seq1  AAATGT-GTTCC--TAAGGGTCATGGAAAGAAGTTTTGAGT-GTGATGG-  135
       ||||| |||||   |||||||||||||||||||||||||| ||||||| 
seq2  -AATGTGGTTCCCTAAAGGGTCATGGAAAGAAGTTTTGAGTGGTGATGGA  149

seq1  AAATCTTTGTCATATTTATAGAGGTAACTTAATGGGTATGTGCATATTTG  185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTGTCATATTTATAGAGGTAACTTAATGGGTATGTGCATATTTG  199

seq1  TGAAATATTAAGTTGGGTACTATAACCAGATGCACTTCTAATATATCATG  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTAAGTTGGGTACTATAACCAGATGCACTTCTAATATATCATG  249

seq1  GGAGTTGTTTAACTCCTTGTAGCATTTTACATGCAGCAACAATATATTTA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGTTTAACTCCTTGTAGCATTTTACATGCAGCAACAATATATTTA  299

seq1  TGGGTCAATGAATAGAAAATTAAATCGTTATTGTATTAATCTTCCCATCC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAATGAATAGAAAATTAAATCGTTATTGTATTAATCTTCCCATCC  349

seq1  ATAAACTTAAGACATCTATACTTTACATGTCCTCAGTATCTTCCAGCTAA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTAAGACATCTATACTTTACATGTCCTCAGTATCTTCCAGCTAA  399

seq1  GTTTATCTATATTTCATCATTAATATAAACATATTTTGGTGCATCTATTT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTATATTTCATCATTAATATAAACATATTTTGGTGCATCTATTT  449

seq1  AGATATTCTATTGTTCATAATAAAATTAAGCTGTCATATAGAGAGATAAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCTATTGTTCATAATAAAATTAAGCTGTCATATAGAGAGATAAA  499

seq1  TACTATAATAAATAGCATAAATTAAAATTGTGTTTTTATAGTATGTGTGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAATAAATAGCATAAATTAAAATTGTGTTTTTATAGTATGTGTGT  549

seq1  GAGCTGCTCACCAAGAAAGGGCTGAGAAACCTATATCTTCCATAAGGTAC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTCACCAAGAAAGGGCTGAGAAACCTATATCTTCCATAAGGTAC  599

seq1  GGAGGCTTAGCTTGGTGATGAGAAAATTTTAGGTTTGGGGTAAATAGTAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTAGCTTGGTGATGAGAAAATTTTAGGTTTGGGGTAAATAGTAT  649

seq1  TGTGATTGGTTTTATTATCAAAAATTATTCCTCAAATGTTTAAAAAAATT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGGTTTTATTATCAAAAATTATTCCTCAAATGTTTAAAAAAATT  699

seq1  CTAGAATAGAGCTCTTTTTGTGGATTTTTAGCTGTGCTGCTCTCTTGTGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATAGAGCTCTTTTTGTGGATTTTTAGCTGTGCTGCTCTCTTGTGG  749

seq1  TTTTTGTTTGTTTGTTTGCTTGTTTATTTGGTTGGTTGGTTTTTGGCTTG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTGTTTGTTTGCTTGTTTATTTGGTTGGTTGGTTTTTGGCTTG  799

seq1  ACCCATCTGAGTCGTCCTTATGTGACTATTTTTTCACTTTATGCCATAAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTGAGTCGTCCTTATGTGACTATTTTTTCACTTTATGCCATAAT  849

seq1  AGGATTAACTTAGCTTAGCCACACCATTCAAACCTTATGCATTACCCAGA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAACTTAGCTTAGCCACACCATTCAAACCTTATGCATTACCCAGA  899

seq1  AAAGATAAGGAATGAACTTCTCATTATCTTTGAAACATGGCTAATAGAAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAGGAATGAACTTCTCATTATCTTTGAAACATGGCTAATAGAAG  949

seq1  TATGCTGATGTCCAAAATTTTCAATCACAGAATTTCAGAATAAAAAGCAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGATGTCCAAAATTTTCAATCACAGAATTTCAGAATAAAAAGCAC  999

seq1  ATTTATGTGCTTACAATGTTGTTTATAGTGAACCTCCTCCCCTTTTCTAT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTGCTTACAATGTTGTTTATAGTGAACCTCCTCCCCTTTTCTAT  1049

seq1  GAGATTATGGCTTCAAGCTATACGGAGACAGTTTGATCAGATAGATTATG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTATGGCTTCAAGCTATACGGAGACAGTTTGATCAGATAGATTATG  1099

seq1  CTAACAGGGCCATTTCATGCTTATGTTCTGAGTATCAAGAATCAGTTGTA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGGGCCATTTCATGCTTATGTTCTGAGTATCAAGAATCAGTTGTA  1149

seq1  ACAGGTATTTCATGCCCCTGTGGGTGAATTC  1166
      |||||||||||||||||||||||||||||||
seq2  ACAGGTATTTCATGCCCCTGTGGGTGAATTC  1180


seq1: chr2_81075193_81076370
seq2: B6Ng01-218A03.g_63_1210

seq1  GAATTCAACCATGCTAGAATGTTGTTTAACAGGTAGAAATATTAATGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCATGCTAGAATGTTGTTTAACAGGTAGAAATATTAATGTCA  50

seq1  GGACTTTAGTAATCAAAAATAATTGTTGTAACAAATATACAGTGCAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTAGTAATCAAAAATAATTGTTGTAACAAATATACAGTGCAATTA  100

seq1  TTTTCTACTTTATCACAAAGACCATTCTGTCTTTTCCTTCCATGAGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTTTATCACAAAGACCATTCTGTCTTTTCCTTCCATGAGTTAG  150

seq1  AACATTTTAAAATATGGATTCTAGTATGTTCTTTTCTTATACTGGATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTAAAATATGGATTCTAGTATGTTCTTTTCTTATACTGGATTTA  200

seq1  CCACTAATTAGTACTAGTCTACTTTTACATTATTTATTTTAATTTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAATTAGTACTAGTCTACTTTTACATTATTTATTTTAATTTTTTAT  250

seq1  ATGAATGATGTTTTCCCTGCATGTCTGTGTACCATGTGTATGCCGGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGATGTTTTCCCTGCATGTCTGTGTACCATGTGTATGCCGGGTGC  300

seq1  TAAAAAATGTCAGAAGAGGGTTTTGGTTCCCCTGGAAGAGAAGTTCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGTCAGAAGAGGGTTTTGGTTCCCCTGGAAGAGAAGTTCCAGA  350

seq1  TGGTTTGAGCAACGTTGTGGTGCTGAGAGTCAAATCGAGGTCTTCTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGAGCAACGTTGTGGTGCTGAGAGTCAAATCGAGGTCTTCTGGAG  400

seq1  GCATAGCTGGTGCTTTTAATTGGAAAGCCATCTTTCTGGCTCAGATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCTGGTGCTTTTAATTGGAAAGCCATCTTTCTGGCTCAGATTTTA  450

seq1  TTTATTTATTTACTTACTTATTTAAATATAACCTCACTTGAAGACATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTACTTACTTATTTAAATATAACCTCACTTGAAGACATTTT  500

seq1  GGAAGGCACTGTCCTTTTTGTCTCTCAGACACTTCAATCCGTGTTTGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCACTGTCCTTTTTGTCTCTCAGACACTTCAATCCGTGTTTGGTA  550

seq1  TCTTGCAAAATCACAACACAGTCAACCCCTGGAGAGACACTATGCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAAAATCACAACACAGTCAACCCCTGGAGAGACACTATGCTTTTC  600

seq1  AACTGTCCTTGAGAGAGTGCTTTTGTCATAAGTAGTCACAGGAGCCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCTTGAGAGAGTGCTTTTGTCATAAGTAGTCACAGGAGCCTCTC  650

seq1  AGCATCCTTCATCTTTCATCCTCAAAGATGGATGCTTGCCTTTCTCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTTCATCTTTCATCCTCAAAGATGGATGCTTGCCTTTCTCTGCT  700

seq1  CAGGGTGTTGAGATGTTACCTTGAATGCTCTTGAGAGAACATGTCCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGTTGAGATGTTACCTTGAATGCTCTTGAGAGAACATGTCCCTTT  750

seq1  CTGGGTGGCTATATATCCTGGTTCATTTCTCAAACGGGAGTTTTTTACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGCTATATATCCTGGTTCATTTCTCAAACGGGAGTTTTTTACAC  800

seq1  CCTATATAAAGTACATACTGTTACACCTTGAAAACCCACTTTTCAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATAAAGTACATACTGTTACACCTTGAAAACCCACTTTTCAAATTC  850

seq1  AGCAACCAATGCATTGTATTTGAGGAAAAAATAAATCAAACCATTTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCAATGCATTGTATTTGAGGAAAAAATAAATCAAACCATTTAAAA  900

seq1  GAATTTCCCTGATCCTTCTCAGAAATGAAGGGGAGGGGGCTGGGAAAGGG  950
      | |||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  G-ATTTCCCTGATCCTTCTCAGAAATGAAGGGGA-GGGGCTGGGAAA-GG  947

seq1  GGCAGTTTGAGGAGGAGTCTGGAAGGAGATGGGCTGTGATCAGGATGTAA  1000
      |||||||||| ||||||||||||| ||||||||||||||||| ||||| |
seq2  GGCAGTTTGA-GAGGAGTCTGGAA-GAGATGGGCTGTGATCA-GATGT-A  993

seq1  AGTGAATAAATAAATCAATTAATGGAAAATTAAGAAAATAGAATTCTCTA  1050
      |||| |||||| |||||  | |||||||    || |||||||||||||||
seq2  AGTG-ATAAAT-AATCA--TTATGGAAA---TAGGAAATAGAATTCTCTA  1036

seq1  TTGTCCCTCCCCCTTACTTTTTTGTAATTATAAATGGTGCTTCTGTGAAC  1100
      |||| |||||||| ||| ||||||| ||||| ||||||||||||||| ||
seq2  TTGT-CCTCCCCC-TAC-TTTTTGT-ATTAT-AATGGTGCTTCTGTG-AC  1080

seq1  TTTCTGTTTGCA-CTAGAGAATGGTAAGAAAAACTCTTTTTCCACATTGT  1149
      |||| | ||||| |||||| |||     | ||||||   |||||||||||
seq2  TTTC-GGTTGCACCTAGAG-ATG----TAGAAACTC---TTCCACATTGT  1121

seq1  TTGCCTAGATAAATACTGAGAAACAGTGT  1178
      |||||||||||||| ||| ||||||||||
seq2  TTGCCTAGATAAAT-CTG-GAAACAGTGT  1148


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