BAC Information

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BAC

Clone NameB6Ng01-218E01
Chromosome10 (Build37)2 (Build37)
Map Location 38,274,370 - 38,275,523142,773,212 - 142,773,771
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218E01.bB6Ng01-218E01.g
ACCGA034429GA034430
length1,1711,033
definitionB6Ng01-218E01.b B6Ng01-218E01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,274,370 - 38,275,523)(142,773,212 - 142,773,771)
sequence
gaattctgcaggcataactggcaatttttaaatggggagaaggataaaat
atcatcacaacaacattaattttggtttagtttcatcagtgaattgcgtc
attaaatataggaatcaagaattaaaccataagcaagacttttaaattct
acagaaaatgtgcagcctaaaacatacctgtaagattaagcaatgtgaag
ccaacatattatttgtatatctgaatactaattaatgtctggcataacgt
aagatacacagatgactgtaacaaacatgcaactaaagctaattaaagga
aagtttcttgtttttaaacatgtgttaatgctgcatttattaaacaaaat
tttttaagtaaaaaaaaaatagtatacaaaaagtattaaattctactctg
gactggataaaattgactgtaagggtggactctgaccctgagttgccttt
tatgtcctattaagaattagaccaaatgatacaattttattttagagcta
tggtggagaaaaaagaaaagaaaccatgtccagaatataagcagatccat
gggaaatggatggccccgactcgaagctatggtgttgtgggaaaaaatgt
aaacaaggttttcgaacagatttgtctaaacattgaaagaatattgagtc
tgtacagaggaggtcttggcactgagtccagagctgtgcttggtaactgg
ggagggtagagaaaaggaggagagtttccatggcaacactggtgctgagc
ataaatggaacaggcatgcatcttcccaagggaggactggagggtggaaa
gtggaaacgaggggtaagggcggtagggcccccatgaagatactttatgc
tgaataagtgttttgtgtaactgtgtggcatgctggacatcactgtgtgc
attctgagagatatgagacctcttaaaaacactgctgccatgatccaaga
cagttctagtggaaataaatgttgtcttaccatttctagagtgaacacaa
atacactgaacccatcttgcttctgatttttgttatgtccctttcaagta
gaatgaagaggtgacatgagttaaagcttttttacagaataatttttcct
tttatatcttggagagttcgtatggaaatataaccctaattttccctcct
ccttagctggcaaagggcagg

gaattcaattttattcagtattagaatggctactggagcttgtttcttca
gaccatttgcttgaaaaattgttttccagccttttactctgcagtagtgt
ctgtcttttcccctgagatgggtttcctctaagcagcaaaatgttgggtc
ctgtttgtgtaaccagtctcttagtctatgtctttttattatggaattga
gtccattgatattaagagatattaaggaaaagtaattgttgcttcctatt
atttttgtttttagaggtggcattctgttcttgtggctgtcatcctttag
gtttgttgaaggattactttcttgctttttctatggtgtggtttctgtcc
ttgtatttgtttttttctgttagtaccctttgaagggctggattcgtgga
aagataatgtatgaatttgattttgttatggaatactttgttttttccat
ctaaggtaattgaaagtttggctgggtatagtagcccgggctggcatttg
tgttctcttagtgtctgtatgacatctgtccaggatcttctggctttcat
agtctctgttgaaaagtctggtgtaattctgataggcctgcctttatatg
tttcttgatctttttcctttactgcttttaatattctatcttcttttagt
gcatttgttttctgattaaattgtgttgggaggaatttattgtctggtcc
agtctttttggagttctgtaggcatcttgtatgttcatgggcatctcttt
ctttagatttgggaagttttcttctatgattttattggagatatttgctg
gtcctttgagttgaaaatctttcattctcatctactcctattattccgta
ggtttggtctctcattgtgtctggatttccttgatgttttgaattaggat
cttttttccatttgcattttctttgatgtgtgcctgatgttctctatgga
atctcctgcacctgaaattctctcatccatctcttgtattctgttgctgg
tcccgcatctatggttccagatttgttcctaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_38274370_38275523
seq2: B6Ng01-218E01.b_41_1211

seq1  GAATTCTGCAGGCATAACTGGCAATTTTTAAATGGGGAGAAGGATAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGCATAACTGGCAATTTTTAAATGGGGAGAAGGATAAAAT  50

seq1  ATCATCACAACAACATTAATTTTGGTTTAGTTTCATCAGTGAATTGCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCACAACAACATTAATTTTGGTTTAGTTTCATCAGTGAATTGCGTC  100

seq1  ATTAAATATAGGAATCAAGAATTAAACCATAAGCAAGACTTTTAAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATAGGAATCAAGAATTAAACCATAAGCAAGACTTTTAAATTCT  150

seq1  ACAGAAAATGTGCAGCCTAAAACATACCTGTAAGATTAAGCAATGTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATGTGCAGCCTAAAACATACCTGTAAGATTAAGCAATGTGAAG  200

seq1  CCAACATATTATTTGTATATCTGAATACTAATTAATGTCTGGCATAACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATATTATTTGTATATCTGAATACTAATTAATGTCTGGCATAACGT  250

seq1  AAGATACACAGATGACTGTAACAAACATGCAACTAAAGCTAATTAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACACAGATGACTGTAACAAACATGCAACTAAAGCTAATTAAAGGA  300

seq1  AAGTTTCTTGTTTTTAAACATGTGTTAATGCTGCATTTATTAAACAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTGTTTTTAAACATGTGTTAATGCTGCATTTATTAAACAAAAT  350

seq1  TTTTTAAGTAAAAAAAAAATAGTATACAAAAAGTATTAAATTCTACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTAAAAAAAAAATAGTATACAAAAAGTATTAAATTCTACTCTG  400

seq1  GACTGGATAAAATTGACTGTAAGGGTGGACTCTGACCCTGAGTTGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGATAAAATTGACTGTAAGGGTGGACTCTGACCCTGAGTTGCCTTT  450

seq1  TATGTCCTATTAAGAATTAGACCAAATGATACAATTTTATTTTAGAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCTATTAAGAATTAGACCAAATGATACAATTTTATTTTAGAGCTA  500

seq1  TGGTGGAGAAAAAAGAAAAGAAACCATGTCCAGAATATAAGCAGATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGAAAAAAGAAAAGAAACCATGTCCAGAATATAAGCAGATCCAT  550

seq1  GGGAAATGGATGGCCCCGACTCGAAGCTATGGTGTTGTGGGAAAAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGGATGGCCCCGACTCGAAGCTATGGTGTTGTGGGAAAAAATGT  600

seq1  AAACAAGGTTTTCGAACAGATTTGTCTAAACATTGAAAGAATATTGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGTTTTCGAACAGATTTGTCTAAACATTGAAAGAATATTGAGTC  650

seq1  TGTACAGAGGAGGTCTTGGCACTGAGTCCAGAGCTGTGCTTGGTAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGAGGAGGTCTTGGCACTGAGTCCAGAGCTGTGCTTGGTAACTGG  700

seq1  GGAGGGTAGAGAAAAGGAGGAGAGTTTCCATGGCAACACTGGTGCTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTAGAGAAAAGGAGGAGAGTTTCCATGGCAACACTGGTGCTGAGC  750

seq1  ATAAATGGAACAGGCATGCATCTTCCCAAGGGAGGACTGGAGGGTGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGAACAGGCATGCATCTTCCCAAGGGAGGACTGGAGGGTGGAAA  800

seq1  GTGGAAACGAGGGGTAAGGGCGGTAGGGCCCCCATGAAGATACTTTATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAACGAGGGGTAAGGGCGGTAGGGCCCCCATGAAGATACTTTATGC  850

seq1  TGAATAAGTGTTTTGTGTAACTGTGTGGCATGCTGGACATCACTGTGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGTGTTTTGTGTAACTGTGTGGCATGCTGGACATCACTGTGTGC  900

seq1  ATTCTGAGAGATATGAGACCTCTTAAAAACACTGCTGCCATGATCCAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGAGATATGAGACCTCTTAAAAACACTGCTGCCATGATCCAAGA  950

seq1  CAGTTCTAGGTGGAAATAAATGTTGTCTTACCATTTCTAGAGTGAACACA  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTA-GTGGAAATAAATGTTGTCTTACCATTTCTAGAGTGAACACA  999

seq1  AATACACTGAACCCATCTTGCTTCTGA-TTTTGTTATGTCCCTTCAAAGT  1049
      ||||||||||||||||||||||||||| ||||||||||||||||  ||||
seq2  AATACACTGAACCCATCTTGCTTCTGATTTTTGTTATGTCCCTTTCAAGT  1049

seq1  AGAATG-AGAGGTGACATGAG-TAAAGC-TTTTTACAG-ATTATTTTTC-  1094
      |||||| |||||||||||||| |||||| ||||||||| || ||||||| 
seq2  AGAATGAAGAGGTGACATGAGTTAAAGCTTTTTTACAGAATAATTTTTCC  1099

seq1  -TTTAT-TCTT-GAGAG-TCGTATGGAA--ATAACCCTA--TTTCCTTC-  1135
       ||||| |||| ||||| ||||||||||  |||||||||  ||||| || 
seq2  TTTTATATCTTGGAGAGTTCGTATGGAAATATAACCCTAATTTTCCCTCC  1149

seq1  -TCTTAGCT-GCAAA-GGCAGG  1154
        ||||||| ||||| ||||||
seq2  TCCTTAGCTGGCAAAGGGCAGG  1171


seq1: chr2_142773212_142773771
seq2: B6Ng01-218E01.g_541_1096 (reverse)

seq1  CCTAGGAAAGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATAC  50
      | |||| || ||||||||||||||||||  | | | ||||||||||||||
seq2  CTTAGG-AACAAATCTGGAACCATAGATGCG-GGACCAGCAACAGAATAC  48

seq1  AAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATC  100
      |||||||||| |||||||| |||||||||| |||||||||||||||||||
seq2  AAGAGATGGATGAGAGAATTTCAGGTGCAGGAGATTCCATAGAGAACATC  98

seq1  -GGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAA  149
       ||||||   ||||||||||||| |||  | ||||||||||||| |||||
seq2  AGGCACA--CATCAAAGAAAATGCAAATGGAAAAAAGATCCTAATTCAAA  146

seq1  ATATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGG-ATAAT  198
      | ||| |||||||||| ||||||||||| ||||||||||||||| |||||
seq2  ACATCAAGGAAATCCA-GACACAATGAG-AGACCAAACCTACGGAATAAT  194

seq1  AGGAGTGGATGAGAATG-AAGATTTTCAACTCAAAGGACCAGCAAACATC  247
      |||||| |||||||||| |||||||||||||||||||||||||||| |||
seq2  AGGAGTAGATGAGAATGAAAGATTTTCAACTCAAAGGACCAGCAAATATC  244

seq1  TTCAACAAAATTATTGAAGAAAACTTGCCAAATCTAAAGAAAGAGATGCC  297
      | ||| ||||| || ||||||||||| |||||||||||||||||||||||
seq2  TCCAATAAAATCATAGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCC  294

seq1  TATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAA  347
       |||||||||||||| ||||||||||||||||| ||||||||||||| ||
seq2  CATGAACATACAAGATGCCTACAGAACTCCAAAAAGACTGGACCAGACAA  344

seq1  GAAATTCCTCCCAACACATAATAATCAGAACAACAAATGCACTAAATAAA  397
       |||||||||||||||||   ||||||||| |||||||||||||||  ||
seq2  TAAATTCCTCCCAACACAATTTAATCAGAA-AACAAATGCACTAAAAGAA  393

seq1  GATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGG  447
      ||||||||| |||||||||||| |||||||| ||||| ||||||||||||
seq2  GATAGAATATTAAAAGCAGTAAAGGAAAAAGATCAAGAAACATATAAAGG  443

seq1  CAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCA  497
      || ||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  CAGGCCTATCAGAATTACACCAGACTTTTCAACAGAGACTATGAAAGCCA  493

seq1  GAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAG  547
      ||||| ||||||||||||| ||||||||||||||||||||||||| ||||
seq2  GAAGATCCTGGACAGATGTCATACAGACACTAAGAGAACACAAATGCCAG  543

seq1  CCCAGGCTACTAT  560
      ||| |||||||||
seq2  CCCGGGCTACTAT  556


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