BAC Information

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BAC

Clone NameB6Ng01-218E05
Chromosome2 (Build37)
Map Location 171,474,939 - 171,636,068
singlet/doubletdoublet
Overlap genenone
Upstream geneDok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218E05.bB6Ng01-218E05.g
ACCGA034437GA034438
length1,204587
definitionB6Ng01-218E05.b B6Ng01-218E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,474,939 - 171,476,161)(171,635,482 - 171,636,068)
sequence
gaattccacaaatatgtacaactagcatacatttaaaacaaaatgaaggt
gctggataggtggctcggtggtgaagagcactgaccactcttccagaaga
gcccgagttctgtccctttaatcatatgtaaagtacagatatgaaaatag
aaagaacctctatgctttggcctatgtagactactcctcaagaaatcacc
aaagtcgttgtttattttgtgcgattttaatcaatactttcaatatgctc
actttatggagatggctactgctagttagcaaattaaaaataaatctgtt
tttcctttgcctctttccctccattcaggtgctggaacattccccaaggt
cctcagaaagggtgcgttcatatagactcttccataccgcactctaatcg
ataagcaccagacgaagccacaacagttctaattactggctataagactc
ctgaaaaacaatcactttcttgcaaagaaacttttcacttggcagaaagg
gaaatcaatcctagcttcttactggctgagctctccccatcatatagaat
aatgctctggacagaaagcagccatgcaaacagcagccacagaaactatg
agaacctgggtagagagtgtgtcgattcggcacctctgggaaatcagaag
aggagactctttaatttaatctacctttgactctaaagcggctccattgt
ctttgttcttcagagagaggtaagctacaatcagaaaaagtgtccagata
gctatctgcatatgacccttcccctgctcatatctgcaattgtaagttta
gtcgtgaatacatgaaaacagatatttactagacacccgaggggtgaaga
aaaggctaaggaaacctcctgcagctgtctattgataagtcatattgatg
accagcttgggatgaactcattgacctttgaaaaatccccattgtctatg
ccaccaaacacctccattaagccaggcttgtggctgaatgtcaggtggat
gagcagctcagagcagatggatgctagatggacctatataaaacatgaca
gctatctccctgttattcctatgcttcgttatatacatgaatttcataaa
gcaactagaacctggatcttcatctgccttatagaggtggttgttagcta
gtctttagaagatgggaattgcatgctggagtctcaggttgtgacccaag
cctc

gaattctaattttcaagcacagtcaaaaatgaaacattctattttaagtt
agtttccctattataacggcattattaagttagctttctcattaatagag
agttacatattgcatgtggtatttttagggttttattcgatagttttcat
cttttgctctgagtgcaaaataaataaataaataaataaataaataaata
aataaatgcaataaaatcccatcatatgtaatgatgggaaggaataaaag
agcagcagaagagaaaagtacctacactactcagacaataaatctgttgt
ggattccctggtggcctttctatagtcacacaagttcattctgggtccct
ccttttgttatttaatactgttgagacgacattgtgtctggggcccattt
ctactctaatcagttttatagaagaattatttttctgtgcctttaactaa
ctgtatcaggagacatttccccattggtcattccctgtgacatcacacag
atctccagacagtttcgaccacaggaaaacaaagaaacgctgtgtcatcc
tcagttgcagatctgtccaggggggtggggtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_171474939_171476161
seq2: B6Ng01-218E05.b_42_1245

seq1  GAATTCCACAAATATGTACAACTAGCATACATTTAAAACAAAATGAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAATATGTACAACTAGCATACATTTAAAACAAAATGAAGGT  50

seq1  GCTGGATAGGTGGCTCGGTGGTGAAGAGCACTGACCACTCTTCCAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATAGGTGGCTCGGTGGTGAAGAGCACTGACCACTCTTCCAGAAGA  100

seq1  GCCCGAGTTCTGTCCCTTTAATCATATGTAAAGTACAGATATGAAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAGTTCTGTCCCTTTAATCATATGTAAAGTACAGATATGAAAATAG  150

seq1  AAAGAACCTCTATGCTTTGGCCTATGTAGACTACTCCTCAAGAAATCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCTCTATGCTTTGGCCTATGTAGACTACTCCTCAAGAAATCACC  200

seq1  AAAGTCGTTGTTTATTTTGTGCGATTTTAATCAATACTTTCAATATGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCGTTGTTTATTTTGTGCGATTTTAATCAATACTTTCAATATGCTC  250

seq1  ACTTTATGGAGATGGCTACTGCTAGTTAGCAAATTAAAAATAAATCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGGAGATGGCTACTGCTAGTTAGCAAATTAAAAATAAATCTGTT  300

seq1  TTTCCTTTGCCTCTTTCCCTCCATTCAGGTGCTGGAACATTCCCCAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGCCTCTTTCCCTCCATTCAGGTGCTGGAACATTCCCCAAGGT  350

seq1  CCTCAGAAAGGGTGCGTTCATATAGACTCTTCCATACCGCACTCTAATCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAAGGGTGCGTTCATATAGACTCTTCCATACCGCACTCTAATCG  400

seq1  ATAAGCACCAGACGAAGCCACAACAGTTCTAATTACTGGCTATAAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACCAGACGAAGCCACAACAGTTCTAATTACTGGCTATAAGACTC  450

seq1  CTGAAAAACAATCACTTTCTTGCAAAGAAACTTTTCACTTGGCAGAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAACAATCACTTTCTTGCAAAGAAACTTTTCACTTGGCAGAAAGG  500

seq1  GAAATCAATCCTAGCTTCTTACTGGCTGAGCTCTCCCCATCATATAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAATCCTAGCTTCTTACTGGCTGAGCTCTCCCCATCATATAGAAT  550

seq1  AATGCTCTGGACAGAAAGCAGCCATGCAAACAGCAGCCACAGAAACTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTGGACAGAAAGCAGCCATGCAAACAGCAGCCACAGAAACTATG  600

seq1  AGAACCTGGGTAGAGAGTGTGTCGATTCGGCACCTCTGGGAAATCAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGGGTAGAGAGTGTGTCGATTCGGCACCTCTGGGAAATCAGAAG  650

seq1  AGGAGACTCTTTAATTTAATCTACCTTTGACTCTAAAGCGGCTCCATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTCTTTAATTTAATCTACCTTTGACTCTAAAGCGGCTCCATTGT  700

seq1  CTTTGTTCTTCAGAGAGAGGTAAGCTACAATCAGAAAAAGTGTCCAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTTCAGAGAGAGGTAAGCTACAATCAGAAAAAGTGTCCAGATA  750

seq1  GCTATCTGCATATGACCCTTCCCCTGCTCATATCTGCAATTGTAAGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTGCATATGACCCTTCCCCTGCTCATATCTGCAATTGTAAGTTTA  800

seq1  GTCGTGAATACATGAAAACAGATATTTACTAGACTTCACTAGGGGTGAAG  850
      ||||||||||||||||||||||||||||||||||  | | ||||||||||
seq2  GTCGTGAATACATGAAAACAGATATTTACTAGAC-ACCCGAGGGGTGAAG  849

seq1  AAAAGGCTAAGGAAACCTCCTGCAGCTGTCTATTGATAAGTCATATTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTAAGGAAACCTCCTGCAGCTGTCTATTGATAAGTCATATTGAT  899

seq1  GACCAGCTTGGGATGAACTCATTGACCTTTGAAAAATCCCCATTGTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTTGGGATGAACTCATTGACCTTTGAAAAATCCCCATTGTCTAT  949

seq1  GCCACCAAACACCTCCAATTAAGCCAGGCTTGTGGCTGAATGTCAGGTGG  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCCACCAAACACCTCC-ATTAAGCCAGGCTTGTGGCTGAATGTCAGGTGG  998

seq1  ATGAGCAGGCTCAGAGCAGGAATGGATGCTAGATGGACCTATAT-AAACA  1049
      ||||||| |||||||||||  ||||||||||||||||||||||| |||||
seq2  ATGAGCA-GCTCAGAGCAG--ATGGATGCTAGATGGACCTATATAAAACA  1045

seq1  TGACAGCTATCTCCCTGTTATTCCTAATGCTTCG-TATATACATGGAATT  1098
      ||||||||||||||||||||||||| |||||||| ||||||||| |||||
seq2  TGACAGCTATCTCCCTGTTATTCCT-ATGCTTCGTTATATACAT-GAATT  1093

seq1  TCATAAAGCACCTAGACCTTGGATCTTCACTCTTGCCTATTAGAGTGGTT  1148
      |||||||||| ||||| | |||||||||| || |||||  |||||  | |
seq2  TCATAAAGCAACTAGAACCTGGATCTTCA-TC-TGCCTTATAGAGGTGGT  1141

seq1  TGTTAAGCTTAGTGTCTTTAGAAGATGGAGATTGCAGTAGGCTTGTGAGT  1198
      |||| ||||    |||||||||||||||  |||||   | |||   ||||
seq2  TGTT-AGCT---AGTCTTTAGAAGATGGGAATTGC---ATGCT--GGAGT  1182

seq1  CTCAGGTGTGTGAACCCACAGCCTC  1223
      ||||||| |||| ||||| ||||||
seq2  CTCAGGT-TGTG-ACCCA-AGCCTC  1204


seq1: chr2_171635482_171636068
seq2: B6Ng01-218E05.g_61_647 (reverse)

seq1  CCCCCCACCCCACCCCCCTGGACAGATCTGCAACTGAGGATGACACAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACCCCACCCCCCTGGACAGATCTGCAACTGAGGATGACACAGCG  50

seq1  TTTCTTTGTTTTCCTGTGGTCGAAACTGTCTGGAGATCTGTGTGATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTTTCCTGTGGTCGAAACTGTCTGGAGATCTGTGTGATGTCA  100

seq1  CAGGGAATGACCAATGGGGAAATGTCTCCTGATACAGTTAGTTAAAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATGACCAATGGGGAAATGTCTCCTGATACAGTTAGTTAAAGGCA  150

seq1  CAGAAAAATAATTCTTCTATAAAACTGATTAGAGTAGAAATGGGCCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATAATTCTTCTATAAAACTGATTAGAGTAGAAATGGGCCCCAG  200

seq1  ACACAATGTCGTCTCAACAGTATTAAATAACAAAAGGAGGGACCCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGTCGTCTCAACAGTATTAAATAACAAAAGGAGGGACCCAGAAT  250

seq1  GAACTTGTGTGACTATAGAAAGGCCACCAGGGAATCCACAACAGATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTGTGACTATAGAAAGGCCACCAGGGAATCCACAACAGATTTAT  300

seq1  TGTCTGAGTAGTGTAGGTACTTTTCTCTTCTGCTGCTCTTTTATTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGTAGTGTAGGTACTTTTCTCTTCTGCTGCTCTTTTATTCCTTC  350

seq1  CCATCATTACATATGATGGGATTTTATTGCATTTATTTATTTATTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTACATATGATGGGATTTTATTGCATTTATTTATTTATTTATTT  400

seq1  ATTTATTTATTTATTTATTTTGCACTCAGAGCAAAAGATGAAAACTATCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTTGCACTCAGAGCAAAAGATGAAAACTATCG  450

seq1  AATAAAACCCTAAAAATACCACATGCAATATGTAACTCTCTATTAATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCCTAAAAATACCACATGCAATATGTAACTCTCTATTAATGAG  500

seq1  AAAGCTAACTTAATAATGCCGTTATAATAGGGAAACTAACTTAAAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAACTTAATAATGCCGTTATAATAGGGAAACTAACTTAAAATAGA  550

seq1  ATGTTTCATTTTTGACTGTGCTTGAAAATTAGAATTC  587
      |||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATTTTTGACTGTGCTTGAAAATTAGAATTC  587


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