BAC Information

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BAC

Clone NameB6Ng01-218F21
Chromosome8 (Build37)2 (Build37)
Map Location 108,512,463 - 108,513,54232,465,196 - 32,465,300
singlet/doubletsingletsinglet
Overlap geneDpep2
Upstream geneLOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3
Downstream geneDdx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218F21.bB6Ng01-218F21.g
ACCGA034516GA034517
length1,080117
definitionB6Ng01-218F21.b B6Ng01-218F21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,512,463 - 108,513,542)(32,465,196 - 32,465,300)
sequence
gaattctcttcttctcgtgcgaatccataatctatcactggttgacagaa
aggggttcaatgagaagatgggggttcaggtcttaagttaggttccaggg
ctaggaaatctctcaccagaagctgcaggaggtcatcaggaagattccga
gcatttgggcacacagccctggcagcggagtgggagaaaatcacaggggc
ttgggatacttccaaggcccgcctggctgcagcatccgagacgtgggaca
gatcaaccatcatacctaagcgattcatttctgccaccaccttctgcagg
gacaggttaaggaggagggtgtcggggctacacgtatgcacacatttacc
tttcaggaaagggggtgtgtgtttgtgcggagttcttacctcaccaaagc
tggtcagtccagtgacactgctgtagaatgcgtggacacccttggatgag
gtctctgccctgaaggacaagcatggggcaaactaactgatggtcacacc
cctccaaacactacccctgcaatcccacagagctggttcacagacccagg
ttggcaaaaggaggaatcccagtctggctcttatcaaagccctgtgtgcg
agtctcgggaatctacgagggcaaaccttggtctttgtccacaagggcag
attcccgctttggaggtctctgtgcttaccagggtgtgttgcaggtgtgt
gtgagcgtcaggtagcgcacccccagcaggtagaaacttcgaagcacagc
gaggctgttgtctagtgaatggccaccttccacaccaatgaggcaagcca
atttctgggtgctgttcagagctgtaggcgtaggtcaggtgattattttc
aggagctatacagtagcttcatccattcccccaataccctgaataaatcc
actttaacttaactgaggtcacaagttccagctcagaataagaggcacat
attctgcgaatgaggtctatctgctccagagtgagacgcagggcatcccg
gttcttgcgtctggcatggtacgtaagcagaccagacctggaggccaagc
ccagggtggttggtatagaaagcctacctt
caggacagtcaggactgcacagagaaaccctgtctcgaaaaacaaaacag
aaaggaagaaaggaagaaaggaagaaaggaagaaaggaagaaaggaaggg
aggaaggaagaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108512463_108513542
seq2: B6Ng01-218F21.b_48_1127

seq1  GAATTCTCTTCTTCTCGTGCGAATCCATAATCTATCACTGGTTGACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTTCTCGTGCGAATCCATAATCTATCACTGGTTGACAGAA  50

seq1  AGGGGTTCAATGAGAAGATGGGGGTTCAGGTCTTAAGTTAGGTTCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTCAATGAGAAGATGGGGGTTCAGGTCTTAAGTTAGGTTCCAGGG  100

seq1  CTAGGAAATCTCTCACCAGAAGCTGCAGGAGGTCATCAGGAAGATTCCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAATCTCTCACCAGAAGCTGCAGGAGGTCATCAGGAAGATTCCGA  150

seq1  GCATTTGGGCACACAGCCCTGGCAGCGGAGTGGGAGAAAATCACAGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGGCACACAGCCCTGGCAGCGGAGTGGGAGAAAATCACAGGGGC  200

seq1  TTGGGATACTTCCAAGGCCCGCCTGGCTGCAGCATCCGAGACGTGGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATACTTCCAAGGCCCGCCTGGCTGCAGCATCCGAGACGTGGGACA  250

seq1  GATCAACCATCATACCTAAGCGATTCATTTCTGCCACCACCTTCTGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACCATCATACCTAAGCGATTCATTTCTGCCACCACCTTCTGCAGG  300

seq1  GACAGGTTAAGGAGGAGGGTGTCGGGGCTACACGTATGCACACATTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTAAGGAGGAGGGTGTCGGGGCTACACGTATGCACACATTTACC  350

seq1  TTTCAGGAAAGGGGGTGTGTGTTTGTGCGGAGTTCTTACCTCACCAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAAAGGGGGTGTGTGTTTGTGCGGAGTTCTTACCTCACCAAAGC  400

seq1  TGGTCAGTCCAGTGACACTGCTGTAGAATGCGTGGACACCCTTGGATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTCCAGTGACACTGCTGTAGAATGCGTGGACACCCTTGGATGAG  450

seq1  GTCTCTGCCCTGAAGGACAAGCATGGGGCAAACTAACTGATGGTCACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCCCTGAAGGACAAGCATGGGGCAAACTAACTGATGGTCACACC  500

seq1  CCTCCAAACACTACCCCTGCAATCCCACAGAGCTGGTTCACAGACCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAACACTACCCCTGCAATCCCACAGAGCTGGTTCACAGACCCAGG  550

seq1  TTGGCAAAAGGAGGAATCCCAGTCTGGCTCTTATCAAAGCCCTGTGTGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAAAGGAGGAATCCCAGTCTGGCTCTTATCAAAGCCCTGTGTGCG  600

seq1  AGTCTCGGGAATCTACGAGGGCAAACCTTGGTCTTTGTCCACAAGGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCGGGAATCTACGAGGGCAAACCTTGGTCTTTGTCCACAAGGGCAG  650

seq1  ATTCCCGCTTTGGAGGTCTCTGTGCTTACCAGGGTGTGTTGCAGGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCGCTTTGGAGGTCTCTGTGCTTACCAGGGTGTGTTGCAGGTGTGT  700

seq1  GTGAGCGTCAGGTAGCGCACCCCCAGCAGGTAGAAACTTCGAAGCACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCGTCAGGTAGCGCACCCCCAGCAGGTAGAAACTTCGAAGCACAGC  750

seq1  GAGGCTGTTGTCTAGTGAATGGCCACCTTCCACACCAATGAGGCAAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTTGTCTAGTGAATGGCCACCTTCCACACCAATGAGGCAAGCCA  800

seq1  ATTTCTGGGTGCTGTTCAGAGCTGTAGGCGTAGGTCAGGTGATTATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGGTGCTGTTCAGAGCTGTAGGCGTAGGTCAGGTGATTATTTTC  850

seq1  AGGAGCTATACAGTAGCTTCATCCATTCCCCCAATACCCTGAATAAATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTATACAGTAGCTTCATCCATTCCCCCAATACCCTGAATAAATCC  900

seq1  ACTTAACTTTAACTGAGGTCACAAGTTCCAGCTCAGAATAAGAGGCACAT  950
      |||| |  ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAACTTAACTGAGGTCACAAGTTCCAGCTCAGAATAAGAGGCACAT  950

seq1  ATTCTGCGAATGAGGTCTATCTGCTCCAGAGTGAGACGCAGGGCATCCCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCGAATGAGGTCTATCTGCTCCAGAGTGAGACGCAGGGCATCCCG  1000

seq1  G-TCCTGCGTCTGGCATGGTACGTAAGCAGACCAGAACTGGAGGCAAAGC  1049
      | || ||||||||||||||||||||||||||||||| |||||||| ||||
seq2  GTTCTTGCGTCTGGCATGGTACGTAAGCAGACCAGACCTGGAGGCCAAGC  1050

seq1  CAGGGGTTGGTTTGTATAGGAGAGCTACCTT  1080
      |  ||| ||||| |||||| |   |||||||
seq2  CCAGGG-TGGTTGGTATAGAAAGCCTACCTT  1080

seq1: chr2_32465196_32465300
seq2: B6Ng01-218F21.g_68_184 (reverse)

seq1  TTTCTTTCTTCCTT----CCTTCCGTTGTT--GTTGTTGTTTTGTT----  40
      ||||||||||||||    |||||| || ||   || ||  ||| ||    
seq2  TTTCTTTCTTCCTTCCTCCCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTT  50

seq1  --GGGCTTTTTTGTTTTGTTTTGTTTTTTTCGAGACAGGGTTTCTCTGTG  88
           |||| ||  ||| | || | |||||||||||||||||||||||||
seq2  TCTTCCTTTCTTCCTTTCTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTG  100

seq1  TAGCCCTGGCTGTCCTG  105
       || |||| ||||||||
seq2  CAGTCCTGACTGTCCTG  117