BAC Information

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BAC

Clone NameB6Ng01-218G09
Chromosome2 (Build37)
Map Location 130,038,749 - 130,214,976
singlet/doubletdoublet
Overlap geneTmc2, Nol5a, Idh3b, Ebf4, LOC668899
Upstream geneA730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb
Downstream geneCpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218G09.bB6Ng01-218G09.g
ACCGA034538GA034539
length1,1531,171
definitionB6Ng01-218G09.b B6Ng01-218G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,038,749 - 130,039,899)(130,213,811 - 130,214,976)
sequence
gaattcataaacagtagttgttgttattattaaagcttatatatcttgtg
tgttcaagctcaagatactatgctgaatcctgaaagatgaggttggggaa
taaagctgagtcggagaagcatatggactcattaacgatgatacaaggta
gcaagtgtattagcgcatgaaggtctggtgcccatgagttaaggatgtta
tttcaaccttagtcaggtggttcttgcttcatcaaaagactgatatctta
gaaaaatggtctgaactgggtctgagagtgtagcatgagagttcatgcct
gctataaataaggccccagggttaattctcagccagtgtggggtccctta
cagaagcaactactcaagagaagaacggggattcaggctcacagttccag
aggcatcaatgtatctgagcaaaaaaccaaagttgctgagggcagcagcc
agagcaaatccaagtaggaaacagagacagcaacctagaaccagggacta
gacagaacacgcaaaggctgccttgacaaacagacctgcttcaaccaacc
aggctcctcttaaaaactacaatttcctgtaacagttccatcagccaggg
aacaagcactcaaaacgtgaacttgtaggggtcctttcagattcaaaatc
acacggctaaaattctatggagcagtaggatgtctcagctagtaacagtg
cttgccacagcaacctgacagcctggattagatccccaggacccatagca
gatggagagaactgactccccaaaagttgtcctctgaccttctgtgtgtg
acatccagtgacacccatatgtccatgtacacatacatatccacaatttt
aaaaataagaacaaagagtttttctgcttttagtctctctgatctctacc
ctttaatatatctgtctgtctgtctgtctgtctgtctgtcatttttggtt
tcattgattcagatcttttttctatgtagccctgtcctggaactcaaaaa
gacagtatgttctctattctcctgagtgctgggattaaatgcttgcttgt
gcacatgtcctgtttgttgattggttttggttgtttgttctcttgcttga
ttgataaacaaggcttcttcgattattctggtctggtctcatgaactcac
tct
aaaacaacgttcaaaataatgttaatgagcttgtctatgtgttggaaaca
ctggagagaatttctgagtaggatcactgtattgtgccacttcaaggaat
tctgtttaaaatgaaccaacactagttagggctggagaaatatgtcagca
tttaattttcttgcagaggacctaaggttggtttccagtatctgtatcac
agcttataactccccttaactccatttccaaggtatctgatgccctcttc
tgtcctccaagagcactacaagcacacaatgcacacacaatacatgtagg
caaaacactcatatctttccttaaaagctttaaatgagccagtaacccag
aggcacacaaagcaatgcagcgatggtcagtaccgttgctatcactcttg
gttgctcaccagaagaagatggtaagagcctattgctgaaaacagcacag
attttggttgtaggacatgcagagatcattctggaactaagaaacatctt
ccctgctggttagttttcatagtgcgggaagctatgtaggtcactgaggc
agaaaattaacagttttatgcaatactggattccaaatgctgcaataatg
acctggcagatgagatggacatttgtggcctgactgtttgaggataggca
acgattttctgcttgaatttaaggaatgctctgcaggaggggatttatgt
ctgatatagtaaacttggtcagaagcccatggctcgggaggtaataggtc
ctataggctagtctactattgttattttgcaaattgtcatgttgaactgt
cttctaaatattgtttatgtctgctctcaaccttggtcagataagctcct
ttttagcagtggatagtggttactgcaagactcgtggctgttgcactcat
aaactctagtagctggtggttacctgcacaagagcaagccagtcaaaatt
ccagcatggccgggacaggaggcacaaagtccacctctagctgagagtgt
gtttgggaggtcagaaggacaacttgaaggagttggttgttggtaggttc
tgacaagccagaaagaaaaacagggaaacagcctggaatggcaggttcct
tgaaggttctactggtttacacacctcttcctgtcggatcttaccttccc
ttgctctctccattttcccgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130038749_130039899
seq2: B6Ng01-218G09.b_46_1198

seq1  GAATTCATAAACAGTAGTTGTTGTTATTATTAAAGCTTATATATCTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAACAGTAGTTGTTGTTATTATTAAAGCTTATATATCTTGTG  50

seq1  TGTTCAAGCTCAAGATACTATGCTGAATCCTGAAAGATGAGGTTGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAGCTCAAGATACTATGCTGAATCCTGAAAGATGAGGTTGGGGAA  100

seq1  TAAAGCTGAGTCGGAGAAGCATATGGACTCATTAACGATGATACAAGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGAGTCGGAGAAGCATATGGACTCATTAACGATGATACAAGGTA  150

seq1  GCAAGTGTATTAGCGCATGAAGGTCTGGTGCCCATGAGTTAAGGATGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTATTAGCGCATGAAGGTCTGGTGCCCATGAGTTAAGGATGTTA  200

seq1  TTTCAACCTTAGTCAGGTGGTTCTTGCTTCATCAAAAGACTGATATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACCTTAGTCAGGTGGTTCTTGCTTCATCAAAAGACTGATATCTTA  250

seq1  GAAAAATGGTCTGAACTGGGTCTGAGAGTGTAGCATGAGAGTTCATGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGGTCTGAACTGGGTCTGAGAGTGTAGCATGAGAGTTCATGCCT  300

seq1  GCTATAAATAAGGCCCCAGGGTTAATTCTCAGCCAGTGTGGGGTCCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAATAAGGCCCCAGGGTTAATTCTCAGCCAGTGTGGGGTCCCTTA  350

seq1  CAGAAGCAACTACTCAAGAGAAGAACGGGGATTCAGGCTCACAGTTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAACTACTCAAGAGAAGAACGGGGATTCAGGCTCACAGTTCCAG  400

seq1  AGGCATCAATGTATCTGAGCAAAAAACCAAAGTTGCTGAGGGCAGCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCAATGTATCTGAGCAAAAAACCAAAGTTGCTGAGGGCAGCAGCC  450

seq1  AGAGCAAATCCAAGTAGGAAACAGAGACAGCAACCTAGAACCAGGGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAATCCAAGTAGGAAACAGAGACAGCAACCTAGAACCAGGGACTA  500

seq1  GACAGAACACGCAAAGGCTGCCTTGACAAACAGACCTGCTTCAACCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAACACGCAAAGGCTGCCTTGACAAACAGACCTGCTTCAACCAACC  550

seq1  AGGCTCCTCTTAAAAACTACAATTTCCTGTAACAGTTCCATCAGCCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTCTTAAAAACTACAATTTCCTGTAACAGTTCCATCAGCCAGGG  600

seq1  AACAAGCACTCAAAACGTGAACTTGTAGGGGTCCTTTCAGATTCAAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCACTCAAAACGTGAACTTGTAGGGGTCCTTTCAGATTCAAAATC  650

seq1  ACACGGCTAAAATTCTATGGAGCAGTAGGATGTCTCAGCTAGTAACAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGCTAAAATTCTATGGAGCAGTAGGATGTCTCAGCTAGTAACAGTG  700

seq1  CTTGCCACAGCAACCTGACAGCCTGGATTAGATCCCCAGGACCCATAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCACAGCAACCTGACAGCCTGGATTAGATCCCCAGGACCCATAGCA  750

seq1  GATGGAGAGAACTGACTCCCCAAAAGTTGTCCTCTGACCTTCTGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGAGAACTGACTCCCCAAAAGTTGTCCTCTGACCTTCTGTGTGTG  800

seq1  ACATCCAGTGACACCCATATGTCCATGTACACATACATATCCACAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGTGACACCCATATGTCCATGTACACATACATATCCACAATTTT  850

seq1  AAAAATAAGAACAAAGAGTTTTTCTGCTTTTAGTCTCTCTGATCTCTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGAACAAAGAGTTTTTCTGCTTTTAGTCTCTCTGATCTCTACC  900

seq1  CTTTAATATATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCATTTTTGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATATATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCATTTTTGGTT  950

seq1  TCATTGATTCAGGATC-TTTTTCTATGTAGCCCTGTCCTGGAACTCAAAA  999
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  TCATTGATTCA-GATCTTTTTTCTATGTAGCCCTGTCCTGGAACTCAAAA  999

seq1  AGACAAGTATG-TCTCTA-TCTCCTGAGTGCTGGGATTAAATGCTTGCTT  1047
      |||| |||||| |||||| |||||||||||||||||||||||||||||||
seq2  AGAC-AGTATGTTCTCTATTCTCCTGAGTGCTGGGATTAAATGCTTGCTT  1048

seq1  GTGCCACCATGTCCTGTTTGGTTGGTTGGTTTTGTTTGTTTGTTTGTTTG  1097
      ||||   |||||||||||| |||| ||||||||| |||||||||   |||
seq2  GTGC--ACATGTCCTGTTT-GTTGATTGGTTTTGGTTGTTTGTTCTCTTG  1095

seq1  TTTGTTTG--AGACAAGGTTTCTCTGTATAATCCTGTCTGTCCT--AGAA  1143
       ||| |||  | |||||| ||||  |  || ||  |||||  ||   |||
seq2  CTTGATTGATAAACAAGGCTTCTTCGATTATTCTGGTCTGGTCTCATGAA  1145

seq1  CTCACTCT  1151
      ||||||||
seq2  CTCACTCT  1153

seq1: chr2_130213811_130214976
seq2: B6Ng01-218G09.g_75_1245 (reverse)

seq1  GCGGGAAATGGGAGAGA--AAGGGGAGGGAAGGTACCGCAGG-AGAGGTG  47
      ||||||||  |||||||  ||||| ||| ||| | |  |||| |||||||
seq2  GCGGGAAAATGGAGAGAGCAAGGGAAGGTAAGATCCGACAGGAAGAGGTG  50

seq1  TGGTAAAACAGTAG-ACCCTCAAGGACACTGGCCATCCA-GCTGTTT-CC  94
      | ||||| |||||| ||| |||||||  ||| |  |||| ||||||| ||
seq2  T-GTAAACCAGTAGAACCTTCAAGGAACCTGCCATTCCAGGCTGTTTCCC  99

seq1  TGTTTTTCTTTTCCTGGC-TGTCAGGAACCTACCACAAACCAACTCCTTC  143
      |||||||||||  ||||| ||||| ||||||||||  |||||||||||||
seq2  TGTTTTTCTTT--CTGGCTTGTCA-GAACCTACCAACAACCAACTCCTTC  146

seq1  AAGTTGT-CTTCTGACCT-CCAAACACACTCCTCAGCTAGAGGTGGACTT  191
      ||||||| |||||||||| ||||||||||| ||||||||||||||||| |
seq2  AAGTTGTCCTTCTGACCTCCCAAACACACT-CTCAGCTAGAGGTGGAC-T  194

seq1  TTGTGCCTCTTGTCCC-GCCATGCTGGAATTTTGACTGGCTTGCTCTTGT  240
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  TTGTGCCTCCTGTCCCGGCCATGCTGGAATTTTGACTGGCTTGCTCTTGT  244

seq1  GCAGGTAACCA-CAGCTACTAGAGTTTATGAGTGCAACAGCCACGAGTCT  289
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  GCAGGTAACCACCAGCTACTAGAGTTTATGAGTGCAACAGCCACGAGTC-  293

seq1  TTGCAGTAACCACTATCCACTGCT-AAAAGGAGCTTATCTGACCAAGGTT  338
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGCAGTAACCACTATCCACTGCTAAAAAGGAGCTTATCTGACCAAGGTT  343

seq1  GAGAGCAGACATAAACAATATTTAGAAGACAGTTCAACATGACAATTTGC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGACATAAACAATATTTAGAAGACAGTTCAACATGACAATTTGC  393

seq1  AAAATAACAATAGTAGACTAGCCTATAGGACCTATTACCTCCCGAGCCAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACAATAGTAGACTAGCCTATAGGACCTATTACCTCCCGAGCCAT  443

seq1  GGGCTTCTGACCAAGTTTACTATATCAGACATAAATCCCCTCCTGCAGAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTGACCAAGTTTACTATATCAGACATAAATCCCCTCCTGCAGAG  493

seq1  CATTCCTTAAATTCAAGCAGAAAATCGTTGCCTATCCTCAAACAGTCAGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTAAATTCAAGCAGAAAATCGTTGCCTATCCTCAAACAGTCAGG  543

seq1  CCACAAATGTCCATCTCATCTGCCAGGTCATTATTGCAGCATTTGGAATC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATGTCCATCTCATCTGCCAGGTCATTATTGCAGCATTTGGAATC  593

seq1  CAGTATTGCATAAAACTGTTAATTTTCTGCCTCAGTGACCTACATAGCTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGCATAAAACTGTTAATTTTCTGCCTCAGTGACCTACATAGCTT  643

seq1  CCCGCACTATGAAAACTAACCAGCAGGGAAGATGTTTCTTAGTTCCAGAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCACTATGAAAACTAACCAGCAGGGAAGATGTTTCTTAGTTCCAGAA  693

seq1  TGATCTCTGCATGTCCTACAACCAAAATCTGTGCTGTTTTCAGCAATAGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTGCATGTCCTACAACCAAAATCTGTGCTGTTTTCAGCAATAGG  743

seq1  CTCTTACCATCTTCTTCTGGTGAGCAACCAAGAGTGATAGCAACGGTACT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCATCTTCTTCTGGTGAGCAACCAAGAGTGATAGCAACGGTACT  793

seq1  GACCATCGCTGCATTGCTTTGTGTGCCTCTGGGTTACTGGCTCATTTAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCGCTGCATTGCTTTGTGTGCCTCTGGGTTACTGGCTCATTTAAA  843

seq1  GCTTTTAAGGAAAGATATGAGTGTTTTGCCTACATGTATTGTGTGTGCAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAGGAAAGATATGAGTGTTTTGCCTACATGTATTGTGTGTGCAT  893

seq1  TGTGTGCTTGTAGTGCTCTTGGAGGACAGAAGAGGGCATCAGATACCTTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTTGTAGTGCTCTTGGAGGACAGAAGAGGGCATCAGATACCTTG  943

seq1  GAAATGGAGTTAAGGGGAGTTATAAGCTGTGATACAGATACTGGAAACCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAGTTAAGGGGAGTTATAAGCTGTGATACAGATACTGGAAACCA  993

seq1  ACCTTAGGTCCTCTGCAAGAAAATTAAATGCTGACATATTTCTCCAGCCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGGTCCTCTGCAAGAAAATTAAATGCTGACATATTTCTCCAGCCC  1043

seq1  TAACTAGTGTTGGTTCATTTTAAACAGAATTCCTTGAAGTGGCACAATAC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTGTTGGTTCATTTTAAACAGAATTCCTTGAAGTGGCACAATAC  1093

seq1  AGTGATCCTACTCAGAAATTCTCTCCAGTGTTTCCAACACATAGACAAGC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCCTACTCAGAAATTCTCTCCAGTGTTTCCAACACATAGACAAGC  1143

seq1  TCATTAACATTATTTTGAACGTTGTTTT  1166
      ||||||||||||||||||||||||||||
seq2  TCATTAACATTATTTTGAACGTTGTTTT  1171