BAC Information

Click to search

BAC

Clone NameB6Ng01-219D10
Chromosome2 (Build37)
Map Location 119,029,156 - 119,175,877
singlet/doubletdoublet
Overlap geneDnajc17, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4
Upstream geneFsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, OTTMUSG00000015762, LOC545640
Downstream geneChac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219D10.bB6Ng01-219D10.g
ACCGA035121GA035122
length5061,190
definitionB6Ng01-219D10.b B6Ng01-219D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,175,366 - 119,175,877)(119,029,156 - 119,030,351)
sequence
caggccagcctggtctatagagtgagttccaggacagccagggctgcaca
gagaaaccctgtctcaaaaaatagaggggaaaaaaaaaaaaaaacagtca
ccattggcaggtctcaggatctgtctccccaagagctcaccctctctggt
ggagccagtgccaccccaaactgcaggatggaggagaggtcgagttttgc
ttcctaggcagcagcaagaggcagcctctctgggcatctctcattgggaa
agggaaacaaagagcagaaggcctttcactagggtgaacaaacaagagtg
agctccctggaagtggaaactcagtgagtctccttatttaactcaaaatt
gtatgcacagggtagatccatcccaaaagagatccatcccaaaagtgtct
acacaattgcctctctctctctctctctctctctctctctctctctctct
ctctcccactatcctctatctggactgacctggaattactatacatacat
gcctga
gaattcccactttatgcatggcatgtgcctgttgaaatcatcaatcatca
ttaattaatcatcattagaaaatgtaagctttggggctagagatgctcag
caggtaagatcttaaagaggacctaaattcagttcctagctccgacatca
ggtggctcacaaccacctgtaatctcgctgtgcctggcctgtgcaggcac
ctgcattcatgtgcacacgaacaatagacacatacacatgctttaaaaag
aaaatgtgagcttcttgggaaatcaccattagccaccaaatttcaaagta
aatagccccagaggcaaggcacagaggctagaaacaaaacacaagtggcc
actcctggggagaatttctattcacatctgtaccagcaccagacacagct
tgacacccagtaggcacttaataaaactgtttgcaggctatgagatggca
cagtggaagattgcaagcttgctatgtacaaagccctggctttgattgcc
acaccaaaagaagtgtttacaggaaatggttccatcctcctaaacaatat
aagaaggaaggaaaggaaagtttgactttgtgaagggtcagggtgtgcct
gccctagctgggtacctggtgtgctgttgtcaaatgtcaagattcaagca
gggagatggacgacctcatacctacttggtgggaatataaatcaaccttt
ctgtgagtcagtgtgcagtgtgaatcataatcttgtaactacattaactt
ttggtctactaacttcactttgtctgaaaacaacactgcgtgctcattcg
atcattcaccaagtatttactgaacatctgtccagcgctaggcattgttt
ctagaagctagaaactgcagcaaacaaaacaggaaggtgctgccaggatt
tttacaccctgatgggagaggccaacagagagcaaatggcattaacataa
catgtgggacaatgaactgaaacagctcccagtggtcaaatgtccagctg
cctctgtctcccagtgctggattaaagtattgtaatcctgctgatgacta
agtattttaactcctcaaattctgcctctagtgacatacttcctcagaag
ccacacctctagcttccaaacagtccattcagtttgggacaaggttcaag
tcctgtgcattattggggactcttctcatgacctacacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_119175366_119175877
seq2: B6Ng01-219D10.b_49_560 (reverse)

seq1  TCAGGCATGTATGTATAGTAATTCCAGGTCAGTCCAGCTAGAGGATAGTG  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAGGCATGTATGTATAGTAATTCCAGGTCAGTCCAGATAGAGGATAGTG  50

seq1  GAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAA  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAA  100

seq1  TTGTGTAGACACTTTTGGGATGGATCTCTTTTGGGATGGATCTACCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGACACTTTTGGGATGGATCTCTTTTGGGATGGATCTACCCTGT  150

seq1  GCATACAATTTTGAGTTAAATAAGGAGACTCACTGAGTTTCCACTTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAATTTTGAGTTAAATAAGGAGACTCACTGAGTTTCCACTTCCAG  200

seq1  GGAGCTCACTCTTGTTTGTTCACCCTAGTGAAAGGCCTTCTGCTCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCACTCTTGTTTGTTCACCCTAGTGAAAGGCCTTCTGCTCTTTGT  250

seq1  TTCCCTTTCCCAATGAGAGATGCCCAGAGAGGCTGCCTCTTGCTGCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTCCCAATGAGAGATGCCCAGAGAGGCTGCCTCTTGCTGCTGCC  300

seq1  TAGGAAGCAAAACTCGACCTCTCCTCCATCCTGCAGTTTGGGGTGGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGCAAAACTCGACCTCTCCTCCATCCTGCAGTTTGGGGTGGCACT  350

seq1  GGCTCCACCAGAGAGGGTGAGCTCTTGGGGAGACAGATCCTGAGACCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCACCAGAGAGGGTGAGCTCTTGGGGAGACAGATCCTGAGACCTGC  400

seq1  CAATGGTGACTGTTTTTTTTTTTTTTTCCCCTCTATTTTTTGAGACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTGACTGTTTTTTTTTTTTTTTCCCCTCTATTTTTTGAGACAGGG  450

seq1  TTTCTCTGTGCAGCCCTGGCTGTCCTGGAACTCACTCTATAGACCAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGCAGCCCTGGCTGTCCTGGAACTCACTCTATAGACCAGGCT  500

seq1  GGCCTGGAATTC  512
      ||||||||||||
seq2  GGCCTGGAATTC  512

seq1: chr2_119029156_119030351
seq2: B6Ng01-219D10.g_67_1256

seq1  GAATTCCCACTTTATGCATGGCATGTGCCTGTTGAAATCATCAATCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTTTATGCATGGCATGTGCCTGTTGAAATCATCAATCATCA  50

seq1  TTAATTAATCATCATTAGAAAATGTAAGCTTTGGGGCTAGAGATGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATCATCATTAGAAAATGTAAGCTTTGGGGCTAGAGATGCTCAG  100

seq1  CAGGTAAGATCTTAAAGAGGACCTAAATTCAGTTCCTAGCTCCGACATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGATCTTAAAGAGGACCTAAATTCAGTTCCTAGCTCCGACATCA  150

seq1  GGTGGCTCACAACCACCTGTAATCTCGCTGTGCCTGGCCTGTGCAGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACAACCACCTGTAATCTCGCTGTGCCTGGCCTGTGCAGGCAC  200

seq1  CTGCATTCATGTGCACACGAACAATAGACACATACACATGCTTTAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCATGTGCACACGAACAATAGACACATACACATGCTTTAAAAAG  250

seq1  AAAATGTGAGCTTCTTGGGAAATCACCATTAGCCACCAAATTTCAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGAGCTTCTTGGGAAATCACCATTAGCCACCAAATTTCAAAGTA  300

seq1  AATAGCCCCAGAGGCAAGGCACAGAGGCTAGAAACAAAACACAAGTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCCCAGAGGCAAGGCACAGAGGCTAGAAACAAAACACAAGTGGCC  350

seq1  ACTCCTGGGGAGAATTTCTATTCACATCTGTACCAGCACCAGACACAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGGGAGAATTTCTATTCACATCTGTACCAGCACCAGACACAGCT  400

seq1  TGACACCCAGTAGGCACTTAATAAAACTGTTTGCAGGCTATGAGATGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCCAGTAGGCACTTAATAAAACTGTTTGCAGGCTATGAGATGGCA  450

seq1  CAGTGGAAGATTGCAAGCTTGCTATGTACAAAGCCCTGGCTTTGATTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGATTGCAAGCTTGCTATGTACAAAGCCCTGGCTTTGATTGCC  500

seq1  ACACCAAAAGAAGTGTTTACAGGAAATGGTTCCATCCTCCTAAACAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAAGAAGTGTTTACAGGAAATGGTTCCATCCTCCTAAACAATAT  550

seq1  AAGAAGGAAGGAAAGGAAAGTTTGACTTTGTGAAGGGTCAGGGTGTGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAGGAAAGGAAAGTTTGACTTTGTGAAGGGTCAGGGTGTGCCT  600

seq1  GCCCTAGCTGGGTACCTGGTGTGCTGTTGTCAAATGTCAAGATTCAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGCTGGGTACCTGGTGTGCTGTTGTCAAATGTCAAGATTCAAGCA  650

seq1  GGGAGATGGACGACCTCATACCTACTTGGTGGGAATATAAATCAACCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGGACGACCTCATACCTACTTGGTGGGAATATAAATCAACCTTT  700

seq1  CTGTGAGTCAGTGTGCAGTGTGAATCATAATCTTGTAACTACATTAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTCAGTGTGCAGTGTGAATCATAATCTTGTAACTACATTAACTT  750

seq1  TTGGTCTACTAACTTCACTTTGTCTGAAAACAACACTGCGTGCTCATTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTACTAACTTCACTTTGTCTGAAAACAACACTGCGTGCTCATTCG  800

seq1  ATCATTCACCAAGTATTTACTGAACATCTGTCCAGCGCTAGGCATTG-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCATTCACCAAGTATTTACTGAACATCTGTCCAGCGCTAGGCATTGTTT  850

seq1  CTAGAAGCTAGAAACTGCAGCAAACAAAACAGGAAGGTGCTGCCAGGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCTAGAAACTGCAGCAAACAAAACAGGAAGGTGCTGCCAGGATT  900

seq1  TTTACACCCTGATGGGAGAGGCCAACAGAGAGCAAATGGCATTAACATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACCCTGATGGGAGAGGCCAACAGAGAGCAAATGGCATTAACATAA  950

seq1  CATGTGGGACAATGAACTGAAACAGCTCCCAGTGGTCAAATGTCCAGCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGACAATGAACTGAAACAGCTCCCAGTGGTCAAATGTCCAGCTG  1000

seq1  CCTCTGTCTCCCAAGTGCTGGGATTAAAGTATTGTAATCCCTGGCTGATG  1049
      |||||||||||| |||||| ||||||||||||||||||||   |||||||
seq2  CCTCTGTCTCCC-AGTGCT-GGATTAAAGTATTGTAATCC--TGCTGATG  1046

seq1  ACTAAAGTATTTTAACT-CTCAAATCCTGCCTCTAGTGACATACTTCCTC  1098
      ||| ||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  ACT-AAGTATTTTAACTCCTCAAATTCTGCCTCTAGTGACATACTTCCTC  1095

seq1  CAAGAGGCCACACCTCCTAAGCCTCCCAAACAGTGCCATCAGTTGGGGAC  1148
        ||| ||||||||| |||   || ||||||||| |  |||||| |||||
seq2  --AGAAGCCACACCT-CTA--GCTTCCAAACAGTCCATTCAGTTTGGGAC  1140

seq1  AAGTGTTCAAAGGCCTGTG-ATTATGGGGGA--CATCTCATGA-CAACAC  1194
      ||| |||| ||| |||||| ||||| |||||  | |||||||| | ||||
seq2  AAG-GTTC-AAGTCCTGTGCATTATTGGGGACTCTTCTCATGACCTACAC  1188

seq1  CA  1196
      ||
seq2  CA  1190