BAC Information

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BAC

Clone NameB6Ng01-219E06
Chromosome10 (Build37)2 (Build37)
Map Location 76,267,086 - 76,267,26571,074,890 - 71,075,892
singlet/doubletsingletsinglet
Overlap genePcbp3
Upstream geneGstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1
Downstream geneLOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219E06.bB6Ng01-219E06.g
ACCGA035158GA035159
length305983
definitionB6Ng01-219E06.b B6Ng01-219E06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,267,086 - 76,267,265)(71,074,890 - 71,075,892)
sequence
aacactctttgtggttacatactattggagtccagggtgacatccttcag
caaatcatggacccttacacaccaaaaaggtcaatgaactctccagtgag
aatgaaggttaaggaggcaagttagcaaagctttctttctgccttttacc
tgggccattaccagaaggtgctgctcacacttaaagtgagtcttctccca
tcaattaagatgatcaaggcaatccccagcaaacatgctcacactaatat
aggtttgtgtgggtcatatatgtatgtgttatatagtatatatgtgtata
tatgt

gaattcacagtcttcattttgtcactgatgtgtacttctttgagaagtag
aaaaacttacgttgtatttctatgtcaagcttaattttttccaaaagagg
ttgtatacctcagtaaattaagtaaattcttttctgtggaatataatgta
ttctgataatactgttgttattattcaaagtataaggacagtattactct
gaataataatgctaaagggcttgcctagcatacatgaagcccttggcttt
aattcctagaatcacacagatgaacatgtgtagaccaagttcttaagctt
tcctttatgatttaaggattttgttgattattgagtagcctttaatccgg
gtgtaattcaaggccctatgcacagatacttatattgaatatggggtcct
ttgactttgaagtcaaagtactatattttaagttgaggattttttttttc
tatgtgtttctatgtgtaatagccctagaacttgctttgtagagccaggc
taggctcaaactcagagatccacttgcctctgcctccaagtgctggaatt
aaaggcgtggatcaccactgtatgcctttaatagctaatgactgaagcac
aaagaaatatggtagttttttttttttttttcaagagacttagataagat
tctgaatataagttcacagtctcttatctaaaacctttggggccatatag
atgttggattttataaccattcagcttttaggaaagcggtaaagtatatt
aacactccaacagaatcttagacattgttgtttcagaaataggagatata
agcatacctaatgaaataaataatattataaatagttttcttaaaatcat
gtcaaggttagccactaagtatgtaggatttgaactgttgcaagtgtgga
catttgcataagcatatgggccatataatactctatagtccatgataggg
aggtttctattatgaaattgaatgaagcctaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_76267086_76267265
seq2: B6Ng01-219E06.b_314_356 (reverse)

seq1  ACATTTATACACATATATACACATATACACATGCTATGTTATATATGTAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTGTGTTATATTATGTACATGTTATACACATATGTTATATGTATACAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTTAGATATGTATGTATAATATATAACACACATACACACATATACATATA  150
                                 ||| ||| ||||||    |||||
seq2  ---------------------------ACATATATACACAT----ATATA  19

seq1  CACATACATACACACATGTACATATATGAC  180
      |   || ||| |||||  ||||||||||||
seq2  C---TATATA-ACACA--TACATATATGAC  43


seq1: chr2_71074890_71075892
seq2: B6Ng01-219E06.g_69_1051

seq1  GAATTCACAGTCTTCATTTTGTCACTGATGTGTACTTCTTTGAGAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCTTCATTTTGTCACTGATGTGTACTTCTTTGAGAAGTAG  50

seq1  AAAAACTTACGTTGTATTTCTATGTCAAGCTTAATTTTTTCCAAAAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTACGTTGTATTTCTATGTCAAGCTTAATTTTTTCCAAAAGAGG  100

seq1  TTGTATACCTCAGTAAATTAAGTAAATTCTTTTCTGTGGAATATAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACCTCAGTAAATTAAGTAAATTCTTTTCTGTGGAATATAATGTA  150

seq1  TTCTGATAATACTGTTGTTATTATTCAAAGTATAAGGACAGTATTACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATAATACTGTTGTTATTATTCAAAGTATAAGGACAGTATTACTCT  200

seq1  GAATAATAATGCTAAAGGGCTTGCCTAGCATACATGAAGCCCTTGGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATAATGCTAAAGGGCTTGCCTAGCATACATGAAGCCCTTGGCTTT  250

seq1  AATTCCTAGAATCACACAGATGAACATGTGTAGACCAAGTTCTTAAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAGAATCACACAGATGAACATGTGTAGACCAAGTTCTTAAGCTT  300

seq1  TCCTTTATGATTTAAGGATTTTGTTGATTATTGAGTAGCCTTTAATCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATGATTTAAGGATTTTGTTGATTATTGAGTAGCCTTTAATCCGG  350

seq1  GTGTAATTCAAGGCCCTATGCACAGATACTTATATTGAATATGGGGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTCAAGGCCCTATGCACAGATACTTATATTGAATATGGGGTCCT  400

seq1  TTGACTTTGAAGTCAAAGTACTATATTTTAAGTTGAGGATTTTTTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTGAAGTCAAAGTACTATATTTTAAGTTGAGGATTTTTTTTTTC  450

seq1  TATGTGTTTCTATGTGTAATAGCCCTAGAACTTGCTTTGTAGAGCCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTCTATGTGTAATAGCCCTAGAACTTGCTTTGTAGAGCCAGGC  500

seq1  TAGGCTCAAACTCAGAGATCCACTTGCCTCTGCCTCCAAGTGCTGGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCAAACTCAGAGATCCACTTGCCTCTGCCTCCAAGTGCTGGAATT  550

seq1  AAAGGCGTGGATCACCACTGTATGCCTTTAATAGCTAATGACTGAAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTGGATCACCACTGTATGCCTTTAATAGCTAATGACTGAAGCAC  600

seq1  AAAGAAATATGGTAGTTTTTTTTTTTTTTTTCAAGAGACTTAGATAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATATGGTAGTTTTTTTTTTTTTTTTCAAGAGACTTAGATAAGAT  650

seq1  TCTGAATATAAGTTCACAGTCTCTTATCTAAAACCTTTGGGGCCATATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATATAAGTTCACAGTCTCTTATCTAAAACCTTTGGGGCCATATAG  700

seq1  ATGTTGGATTTTATAACCATTCAGCTTTTAGGAAAGCGGTAAAGTATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGATTTTATAACCATTCAGCTTTTAGGAAAGCGGTAAAGTATATT  750

seq1  AACACTCCAACAGAATCTTAGACATTGTTGTTTCAGAAATAGGAGATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCCAACAGAATCTTAGACATTGTTGTTTCAGAAATAGGAGATATA  800

seq1  AGCATACCTAATGAAATAAATAATAATTATAAATAGTTTTCTTATAATCA  850
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  AGCATACCTAATGAAATAAATAAT-ATTATAAATAGTTTTCTTAAAATCA  849

seq1  TGTCAGGGTTAGCCACTAAGTATGTTAGGATTTTGAAACTGTTGGCAGTG  900
      ||||| |||||||||||||||||| ||||||||   ||||||||  ||||
seq2  TGTCAAGGTTAGCCACTAAGTATG-TAGGATTT--GAACTGTTGCAAGTG  896

seq1  TGGACATTTTGCATAAGGCATTATGGGCCATTATAAATACTCTAATAGTT  950
      |||||| ||||||||| ||| ||||||||| ||| |||||||| ||||| 
seq2  TGGACA-TTTGCATAA-GCA-TATGGGCCA-TAT-AATACTCT-ATAGTC  940

seq1  CATGTATAGGGAGTGTTTTTCCTATTATAGAAATTTGGAAATGATAGCCT  1000
      |||| |||||||| ||||   ||||||| ||||||    ||||| |||||
seq2  CATG-ATAGGGAG-GTTT---CTATTAT-GAAATT---GAATGA-AGCCT  980

seq1  AAT  1003
      |||
seq2  AAT  983


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