BAC Information

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BAC

Clone NameB6Ng01-219I22
Chromosome2 (Build37)
Map Location 128,863,597 - 128,955,668
singlet/doubletdoublet
Overlap geneLOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5
Upstream geneAcoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6
Downstream geneLOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219I22.bB6Ng01-219I22.g
ACCGA035357GA035358
length1,1581,163
definitionB6Ng01-219I22.b B6Ng01-219I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,863,597 - 128,864,762)(128,954,475 - 128,955,668)
sequence
gaattctgctctggcgtgttggtgcatggtaaggtcactacttgatggtt
cctgttctccatagtagtgacacctttgctgacagcagggagtggaaatc
tccacccatgtatgcaggtgccagggaccactgtgtaggaaagttgttct
actggtagcaaagaggtgtttgggccacttttccataacccaggtacccg
ctggtactttatttcagaagctgtgggatgctgggggctggggagaataa
aataagaccaccccttggtcatatcaaacctttggacctggactcgaagt
gggctgaggatgtctggatggttggacccatccagcccctcgcggacttg
ctgggctgcatggatgaggtgctttgccatggttaaaaagacatctgtgt
cctgagcactgtcctcagctctgctgccttcagtggctgcacctagggtc
acggaagactgtgccagctgttgaaccacgactctcatcccgttccggaa
aataggatcagggtcttgacccacatatctgctcatcacctgtactatgt
gggtggctcttccgcgtaagaatgccacagatctggaaaactctctggac
gctccgctcctcagagcaattgtggacaagtccaagtgtttagtcatttc
ctggatggacacactcaggaattctggaatgttgagaacgacatcaaagc
atgacaggaggtgttcggattccctggcccaagcctcaagcagggcctgg
agggtggcagggctccaatccaggccaagcgtctggggactttgtgaaaa
gagttctttcactttgatcacaagcctctgaagacctgccacggcagcct
ccaagtctctgccagtttgctgctgtgggcagcagacccaaaccaaatgg
gccacccggatcatctgcttagcctggttgtggaaagcatcgagaagtat
ctgggacagtctctgccagcttcgctatcacagcggacctgatagtgacg
tcgccaggcggcctggacagtgtctctagaggactttgggtgtcttgtga
acgtgtcagatctggcgcagtaacccagcgcgaactgctcgagagcgcat
cagttcgcggcccgcatagcttcccagtcgtccttgggaactgaccgggg
gaactgtg
gaattcagtcatttcccgttggggaccgtgcagtctgacaagcatgatct
agagttatagggagttgtaactcacatctccaggcgaattcaagcgccga
tcagtcagggagaagagacccgccttttccggtatcaggttgttatggcg
gcgcccaacccagacctcctggcctcactcttccggtcgtcgagcgtccc
tgccactcatcccacattggtccaaccttcatggctgtgtcctgctttgc
tttccgcctcactgcctatccgggaggaggcccctgtaactacttccggt
ccgtcagctattttagtttatttacttccggcttgtggtggtcgcgttta
gtgatcaccggaagcaggacttcggccgtgatcgagcagccaggcacaga
gcaccagagctggttccctgtaggtcagatctacagccgctcgcgctgcc
actttcccggctggagttgaggccaccggcccgcgtgactatggctcggc
acacgctgcggctgaggcggcagctgtgcccgccgctgctagtttaggaa
cacggggattgccctctcaggctgagctaccagtggctttccgccactgc
gtattctcctcctgactttagttccaacttgacggaaaggaatgatctta
aacgccacattgggcttcccatccgattattcactcagacatgtcctttt
cctgccataggtggtaaaggcaggatgagagtgggttttattgcttgctc
cttgcaatcgtgcacaaattattttctttgtaatttccttaggtggtgtt
tgcaccctctccacatttgccttcagattatagggctagacctggaagtt
catttccctgtaaggctaaatattcctcatatgggagaggcctaagctag
agaaatgagcggtaggtgattaccttagcacgcagtgtaaatgagaacga
ctgctttggcctcatatatacagtgacacttcattttggaaacttgacac
ttcacactctagttcttttgtctgtgctgtcaagagtcattaagaatgat
ggaggaactagatacccttagttgagtgaagcgaatctgaaatgcaggct
cagagtgcttcagtactggtcctctcgggagctcattatggatagaactt
taaagaggtactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_128863597_128864762
seq2: B6Ng01-219I22.b_47_1204

seq1  GAATTCTGCTCTGGCGTGTTGGTGCATGGTAAGGTCACTACTTGATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCTGGCGTGTTGGTGCATGGTAAGGTCACTACTTGATGGTT  50

seq1  CCTGTTCTCCATAGTAGTGACACCTTTGCTGACAGCAGGGAGTGGAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTCCATAGTAGTGACACCTTTGCTGACAGCAGGGAGTGGAAATC  100

seq1  TCCACCCATGTATGCAGGTGCCAGGGACCACTGTGTAGGAAAGTTGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCATGTATGCAGGTGCCAGGGACCACTGTGTAGGAAAGTTGTTCT  150

seq1  ACTGGTAGCAAAGAGGTGTTTGGGCCACTTTTCCATAACCCAGGTACCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGCAAAGAGGTGTTTGGGCCACTTTTCCATAACCCAGGTACCCG  200

seq1  CTGGTACTTTATTTCAGAAGCTGTGGGATGCTGGGGGCTGGGGAGAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTTTATTTCAGAAGCTGTGGGATGCTGGGGGCTGGGGAGAATAA  250

seq1  AATAAGACCACCCCTTGGTCATATCAAACCTTTGGACCTGGACTCGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACCACCCCTTGGTCATATCAAACCTTTGGACCTGGACTCGAAGT  300

seq1  GGGCTGAGGATGTCTGGATGGTTGGACCCATCCAGCCCCTCGCGGACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGGATGTCTGGATGGTTGGACCCATCCAGCCCCTCGCGGACTTG  350

seq1  CTGGGCTGCATGGATGAGGTGCTTTGCCATGGTTAAAAAGACATCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGCATGGATGAGGTGCTTTGCCATGGTTAAAAAGACATCTGTGT  400

seq1  CCTGAGCACTGTCCTCAGCTCTGCTGCCTTCAGTGGCTGCACCTAGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCACTGTCCTCAGCTCTGCTGCCTTCAGTGGCTGCACCTAGGGTC  450

seq1  ACGGAAGACTGTGCCAGCTGTTGAACCACGACTCTCATCCCGTTCCGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAGACTGTGCCAGCTGTTGAACCACGACTCTCATCCCGTTCCGGAA  500

seq1  AATAGGATCAGGGTCTTGACCCACATATCTGCTCATCACCTGTACTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATCAGGGTCTTGACCCACATATCTGCTCATCACCTGTACTATGT  550

seq1  GGGTGGCTCTTCCGCGTAAGAATGCCACAGATCTGGAAAACTCTCTGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTCTTCCGCGTAAGAATGCCACAGATCTGGAAAACTCTCTGGAC  600

seq1  GCTCCGCTCCTCAGAGCAATTGTGGACAAGTCCAAGTGTTTAGTCATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGCTCCTCAGAGCAATTGTGGACAAGTCCAAGTGTTTAGTCATTTC  650

seq1  CTGGATGGACACACTCAGGAATTCTGGAATGTTGAGAACGACATCAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGACACACTCAGGAATTCTGGAATGTTGAGAACGACATCAAAGC  700

seq1  ATGACAGGAGGTGTTCGGATTCCCTGGCCCAAGCCTCAAGCAGGGCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGAGGTGTTCGGATTCCCTGGCCCAAGCCTCAAGCAGGGCCTGG  750

seq1  AGGGTGGCAGGGCTCCAATCCAGGCCAAGCGTCTGGGGACTTTGTGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCAGGGCTCCAATCCAGGCCAAGCGTCTGGGGACTTTGTGAAAA  800

seq1  GAGTTCTTTCACTTTGATCACAAGCCTCTGAAGACCTGCCACGGCAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTTCACTTTGATCACAAGCCTCTGAAGACCTGCCACGGCAGCCT  850

seq1  CCAAGTCTCTGCCAGTTTGCTGCTGTGGGCAGCAGACCCAAACCAAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTCTGCCAGTTTGCTGCTGTGGGCAGCAGACCCAAACCAAATGG  900

seq1  GCCACCCGGATCATCTGCTTAGCCTGGTTGTGGAAAGCATCGAGAAGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCGGATCATCTGCTTAGCCTGGTTGTGGAAAGCATCGAGAAGTAT  950

seq1  CT-GGACAGTCTCTGCCAAGGCTTCGCTATCACAGCGGAACCTGATAGTG  999
      || |||||||||||||||  |||||||||||||||||| |||||||||| 
seq2  CTGGGACAGTCTCTGCCA--GCTTCGCTATCACAGCGG-ACCTGATAGT-  996

seq1  GACGTCGCCAAGGCGGCCTGGACCAGTGTCTCTAGAGGACTTTGGGTGTC  1049
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  GACGTCGCC-AGGCGGCCTGGA-CAGTGTCTCTAGAGGACTTTGGGTGTC  1044

seq1  -TGTGAACGTGTCCAGAATCTGGCGCAGTAACCCAGCGCGAACTGCTCGA  1098
       ||||||||||| ||| |||||||||||||||||||||||||||||||| 
seq2  TTGTGAACGTGT-CAG-ATCTGGCGCAGTAACCCAGCGCGAACTGCTCG-  1091

seq1  AAGAGCGCATCAG-TCGCGGCCCGCAGAGCTTCGCAGTCGGTCCCTGG--  1145
       |||||||||||| |||||||||||| |||||| ||||| |||| |||  
seq2  -AGAGCGCATCAGTTCGCGGCCCGCATAGCTTCCCAGTC-GTCCTTGGGA  1139

seq1  ACTGGACCGGGGGAGACTGTG  1166
      ||| |||||||||| ||||||
seq2  ACT-GACCGGGGGA-ACTGTG  1158

seq1: chr2_128954475_128955668
seq2: B6Ng01-219I22.g_67_1229 (reverse)

seq1  GAGTACCT-TTTAAAGTTCTTTCATTAATGAGCTCCCCAGAAGGGAACCC  49
      |||||||| ||||||||||| ||  |||||||||||| |||  |||   |
seq2  GAGTACCTCTTTAAAGTTCTATCCATAATGAGCTCCCGAGA--GGA---C  45

seq1  CAGTAACAGAAGCACTCTTGAGACCTGCATTTCTCAGATCCGCTTCACTT  99
      |||| || ||||||||| |||| ||||||||  |||||| |||||||| |
seq2  CAGT-ACTGAAGCACTC-TGAG-CCTGCATT--TCAGATTCGCTTCAC-T  89

seq1  CAAACCTTAGGGTTATCTAGTTCTCTCCATTCCATTCTTAATGACTCTTT  149
      |||  || |||| |||||||||| ||||||  |||||||||||||||  |
seq2  CAA--CTAAGGG-TATCTAGTTC-CTCCAT--CATTCTTAATGACTC--T  131

seq1  TGACAGCAACCAGACAAAAGGAAACTAGAAGTGTGGAGTGTCAAGTTTCC  199
      ||||||||  ||||||||||  |||||| |||||| ||||||||||||||
seq2  TGACAGCA--CAGACAAAAG--AACTAG-AGTGTGAAGTGTCAAGTTTCC  176

seq1  CAAAAATGAAAGTGTCACTGTATATTATGAAGGCCAAAGCAGTCGTTCTC  249
        |||||| ||||||||||||||| |||| ||||||||||||||||||||
seq2  --AAAATG-AAGTGTCACTGTATA-TATG-AGGCCAAAGCAGTCGTTCTC  221

seq1  ATTTTACAACTGCGTGCTAAGGTAATCACCTTACCGCTCATTTTCTCTAG  299
      | ||||| |||||||||||||||||||||| ||||||||| |||||||||
seq2  A-TTTAC-ACTGCGTGCTAAGGTAATCACC-TACCGCTCA-TTTCTCTAG  267

seq1  CTTAGGCCTCT-CCATATGAGGAATATTTAGCCTTACAGGGAAATGAACT  348
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCCTCTCCCATATGAGGAATATTTAGCCTTACAGGGAAATGAACT  317

seq1  TCCAGGTCTAGCCCTATAATCTGAAGGCAAATGTGGAGAGGGTGCAAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCTAGCCCTATAATCTGAAGGCAAATGTGGAGAGGGTGCAAACA  367

seq1  CCACCTAAGGAAATTACAAAGAAAATAATTTGTGCACGATTGCAAGGAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAAGGAAATTACAAAGAAAATAATTTGTGCACGATTGCAAGGAGC  417

seq1  AAGCAATAAAACCCACTCTCATCCTGCCTTTACCACCTATGGCAGGAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAAAACCCACTCTCATCCTGCCTTTACCACCTATGGCAGGAAAA  467

seq1  GGACATGTCTGAGTGAATAATCGGATGGGAAGCCCAATGTGGCGTTTAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGTCTGAGTGAATAATCGGATGGGAAGCCCAATGTGGCGTTTAAG  517

seq1  ATCATTCCTTTCCGTCAAGTTGGAACTAAAGTCAGGAGGAGAATACGCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCCTTTCCGTCAAGTTGGAACTAAAGTCAGGAGGAGAATACGCAG  567

seq1  TGGCGGAAAGCCACTGGTAGCTCAGCCTGAGAGGGCAATCCCCGTGTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGAAAGCCACTGGTAGCTCAGCCTGAGAGGGCAATCCCCGTGTTCC  617

seq1  TAAACTAGCAGCGGCGGGCACAGCTGCCGCCTCAGCCGCAGCGTGTGCCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGCAGCGGCGGGCACAGCTGCCGCCTCAGCCGCAGCGTGTGCCG  667

seq1  AGCCATAGTCACGCGGGCCGGTGGCCTCAACTCCAGCCGGGAAAGTGGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGTCACGCGGGCCGGTGGCCTCAACTCCAGCCGGGAAAGTGGCA  717

seq1  GCGCGAGCGGCTGTAGATCTGACCTACAGGGAACCAGCTCTGGTGCTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGAGCGGCTGTAGATCTGACCTACAGGGAACCAGCTCTGGTGCTCTG  767

seq1  TGCCTGGCTGCTCGATCACGGCCGAAGTCCTGCTTCCGGTGATCACTAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTGCTCGATCACGGCCGAAGTCCTGCTTCCGGTGATCACTAAA  817

seq1  CGCGACCACCACAAGCCGGAAGTAAATAAACTAAAATAGCTGACGGACCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGACCACCACAAGCCGGAAGTAAATAAACTAAAATAGCTGACGGACCG  867

seq1  GAAGTAGTTACAGGGGCCTCCTCCCGGATAGGCAGTGAGGCGGAAAGCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGTTACAGGGGCCTCCTCCCGGATAGGCAGTGAGGCGGAAAGCAA  917

seq1  AGCAGGACACAGCCATGAAGGTTGGACCAATGTGGGATGAGTGGCAGGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGACACAGCCATGAAGGTTGGACCAATGTGGGATGAGTGGCAGGGA  967

seq1  CGCTCGACGACCGGAAGAGTGAGGCCAGGAGGTCTGGGTTGGGCGCCGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCGACGACCGGAAGAGTGAGGCCAGGAGGTCTGGGTTGGGCGCCGCC  1017

seq1  ATAACAACCTGATACCGGAAAAGGCGGGTCTCTTCTCCCTGACTGATCGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACCTGATACCGGAAAAGGCGGGTCTCTTCTCCCTGACTGATCGG  1067

seq1  CGCTTGAATTCGCCTGGAGATGTGAGTTACAACTCCCTATAACTCTAGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGAATTCGCCTGGAGATGTGAGTTACAACTCCCTATAACTCTAGAT  1117

seq1  CATGCTTGTCAGACTGCACGGTCCCCAACGGGAAATGACTGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGTCAGACTGCACGGTCCCCAACGGGAAATGACTGAATTC  1163