BAC Information

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BAC

Clone NameB6Ng01-220B06
Chromosome2 (Build37)
Map Location 122,525,231 - 122,635,927
singlet/doubletdoublet
Overlap geneSlc30a4, Pldn, Sqrdl
Upstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220B06.bB6Ng01-220B06.g
ACCGA035728GA035729
length1,2021,031
definitionB6Ng01-220B06.b B6Ng01-220B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,634,740 - 122,635,927)(122,525,231 - 122,526,214)
sequence
gaattcttcagacccaacgccactgtgtttatgtaagttctctgggaaac
tctggggaaattgtttaaaactctgggtgccatgacagaattaggttaac
aagaaatttagtagggaaaaatgccctgcaagataaagactgaaggggaa
gcggggaggactgaacttcagactgtgacgtgggtggtatccctgatgga
atatagagaaaaggaaaatcttaggttcagccaagtttgtaggcctccca
gagtcaaaaccacccagcagaggacctagaactggcaggtattagtaacc
catagtgcctgtcacaagctgaaaaagcacaggctgagctcagtgtccct
gaagcactcaaggggaggcacctgggctctagaatcttcatgcagcagga
gttctaagcagccctgtgtcagagctgcgacacagtctttgacacagttc
tacagtctctagaaagttctcagtctctagaaagtagtctctagaaagta
gtgccagctgtaagttgaacacaccacggagacaacaagaaagccatcgc
cccaacaccagcttcttctcccaagtgctacaacttcccattgctgctag
tcaagagattttctcaaataagtaaatcaacaaccaagttttatttagaa
aatagagttttattatttcacttggatgtttccaaagactcgttctgggt
tgtccacatgatagctattcagaggcctagaaaggtcaccatgtccaacc
tccttaaagggtgaggttctgagtcctttgtatctgtcatgtcaatcagt
aactgcgattttgatccagaagccatccaagaaaagcaagctgtgagcca
tctttaattcatgcccagatgaaacagctttcgcaagaaggctggacctc
cccagtagcctctgtaagaaaataacacagagaagccatggagacaaagg
gagatgaggtgacatcattgtttataaaaagccgctaggaatgcctatca
gcacataagcaagacatgtctactgaagttgaaaagattgtcatgtctgg
aaacaccctacgatgagtcctagctttgacactgatttgcttgtggtgag
ctcagcatgctgactaaacctcagcttcaccccacaaagccacttgccta
acatgcattactgctacttgccttaccttcaccttcaggattttcaaagg
ag
gaattccctaaatagaacctctataccaccttctctgaggctcagggaac
atgtggaagagggggctgaaaaaagttcagagctggaggatggagagatc
tgccacaaaaagacgtcttctgtatatgacatagctgttgtacccatgga
ctcggtgccactgtggttacctgatcaagacctgtaacaggtttggccct
gtcaacatttcatccaggaagagagaagatttttagggctgcacctctcc
ctgagggactactgacagtcaatggtttctggggagaagggtgtcactct
cttcagtggtgtactcactgctaagtttcccatgcttcataagtcatttt
cttcaatgctcacacaaactgtcccaattaaagtcagtgagtgggtcaca
tacccaaaacgacaggaaagtgtgagccttgctgggaaaaagggttccag
tgtgaaagggagcagggatgtaagagagggggtgtgtaaaatgattaaaa
ttcattataagcaagtgtaaaatattgaagaatttttaaaatgcaattaa
aaattcaacaaaagctcacttactatgtctaatttgtatcatttactgtt
ttaggtatcaggatgtcagcttatatttcagtcaaaaaaattaaaataat
aaaagacatgtaaatagagtttcaagtggggaaaataagatgcagaggtt
tatcccaatagtgaaaaacaagtcttttcagagatgtcttttgaaatgaa
gttatgactgactaacaagcagtcaaggcacagtctgggaaaaggcagga
atataaaagctcaggcgagaggctagagaggctcagtggttaggagaact
tgctacttctttgttctggttcccagcccctagaccaggaagttcacact
cacctgaaagcttcagcttcaaggggaatctgatgcctctagcactgtac
tcaattacctgcacacactcaccctccaaggacccattaccctctcccac
aaatacacaataactaaactaaaatattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_122634740_122635927
seq2: B6Ng01-220B06.b_48_1249 (reverse)

seq1  CTCCTTTG-AAATCTTG-AGGTGAAGGTAA-GCAGGTAGCAGT-ATGCAT  46
      |||||||| ||||| || |||||||||||| ||| |||||||| ||||||
seq2  CTCCTTTGAAAATCCTGAAGGTGAAGGTAAGGCAAGTAGCAGTAATGCAT  50

seq1  G-TAG--CAGTGGCTTTGTGGGTGTATGCTGA-GTTTAGTCAGCATGCTG  92
      | |||   ||||||||||||||   | ||||| |||||||||||||||||
seq2  GTTAGGCAAGTGGCTTTGTGGGGTGAAGCTGAGGTTTAGTCAGCATGCTG  100

seq1  AGCTCA-CAC-AGCAAATTCAGTGTCAAAGCTAGGACTCATCGTAGGTTG  140
      |||||| ||| |||||| ||||||||||||||||||||||||||||| ||
seq2  AGCTCACCACAAGCAAA-TCAGTGTCAAAGCTAGGACTCATCGTAGGGTG  149

seq1  -TTCCAGACATGAC-ATCCTTTCCACTTCAGTAGACATGTCTTGCCTTAT  188
       ||||||||||||| ||| |||| |||||||||||||||||||| |||||
seq2  TTTCCAGACATGACAATCTTTTCAACTTCAGTAGACATGTCTTG-CTTAT  198

seq1  GTGCTGATAGGCATTCCTAGCGGCTTTTTATAA--CATGATGTCACCTCA  236
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  GTGCTGATAGGCATTCCTAGCGGCTTTTTATAAACAATGATGTCACCTCA  248

seq1  TCT-CCTTTGTCTCCATGGCTTCTCTGTGTTA-TTTCTTACAGAGGCTAC  284
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTCCCTTTGTCTCCATGGCTTCTCTGTGTTATTTTCTTACAGAGGCTAC  298

seq1  TGGGGAGGTCCAGCCTTCTTGCGAAAGCTGTTTCATCTGGGCATGAATTA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGTCCAGCCTTCTTGCGAAAGCTGTTTCATCTGGGCATGAATTA  348

seq1  AAGATGGCTCACAGCTTGCTTTTCTTGGATGGCTTCTGGATCAAAATCGC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCTCACAGCTTGCTTTTCTTGGATGGCTTCTGGATCAAAATCGC  398

seq1  AGTTACTGATTGACATGACAGATACAAAGGACTCAGAACCTCACCCTTTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGATTGACATGACAGATACAAAGGACTCAGAACCTCACCCTTTA  448

seq1  AGGAGGTTGGACATGGTGACCTTTCTAGGCCTCTGAATAGCTATCATGTG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTGGACATGGTGACCTTTCTAGGCCTCTGAATAGCTATCATGTG  498

seq1  GACAACCCAGAACGAGTCTTTGGAAACATCCAAGTGAAATAATAAAACTC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCCAGAACGAGTCTTTGGAAACATCCAAGTGAAATAATAAAACTC  548

seq1  TATTTTCTAAATAAAACTTGGTTGTTGATTTACTTATTTGAGAAAATCTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTAAATAAAACTTGGTTGTTGATTTACTTATTTGAGAAAATCTC  598

seq1  TTGACTAGCAGCAATGGGAAGTTGTAGCACTTGGGAGAAGAAGCTGGTGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAGCAGCAATGGGAAGTTGTAGCACTTGGGAGAAGAAGCTGGTGT  648

seq1  TGGGGCGATGGCTTTCTTGTTGTCTCCGTGGTGTGTTCAACTTACAGCTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCGATGGCTTTCTTGTTGTCTCCGTGGTGTGTTCAACTTACAGCTG  698

seq1  GCACTACTTTCTAGAGACTACTTTCTAGAGACTGAGAACTTTCTAGAGAC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACTTTCTAGAGACTACTTTCTAGAGACTGAGAACTTTCTAGAGAC  748

seq1  TGTAGAACTGTGTCAAAGACTGTGTCGCAGCTCTGACACAGGGCTGCTTA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACTGTGTCAAAGACTGTGTCGCAGCTCTGACACAGGGCTGCTTA  798

seq1  GAACTCCTGCTGCATGAAGATTCTAGAGCCCAGGTGCCTCCCCTTGAGTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTGCTGCATGAAGATTCTAGAGCCCAGGTGCCTCCCCTTGAGTG  848

seq1  CTTCAGGGACACTGAGCTCAGCCTGTGCTTTTTCAGCTTGTGACAGGCAC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGACACTGAGCTCAGCCTGTGCTTTTTCAGCTTGTGACAGGCAC  898

seq1  TATGGGTTACTAATACCTGCCAGTTCTAGGTCCTCTGCTGGGTGGTTTTG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTACTAATACCTGCCAGTTCTAGGTCCTCTGCTGGGTGGTTTTG  948

seq1  ACTCTGGGAGGCCTACAAACTTGGCTGAACCTAAGATTTTCCTTTTCTCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGAGGCCTACAAACTTGGCTGAACCTAAGATTTTCCTTTTCTCT  998

seq1  ATATTCCATCAGGGATACCACCCACGTCACAGTCTGAAGTTCAGTCCTCC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCATCAGGGATACCACCCACGTCACAGTCTGAAGTTCAGTCCTCC  1048

seq1  CCGCTTCCCCTTCAGTCTTTATCTTGCAGGGCATTTTTCCCTACTAAATT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTCCCCTTCAGTCTTTATCTTGCAGGGCATTTTTCCCTACTAAATT  1098

seq1  TCTTGTTAACCTAATTCTGTCATGGCACCCAGAGTTTTAAACAATTTCCC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTAACCTAATTCTGTCATGGCACCCAGAGTTTTAAACAATTTCCC  1148

seq1  CAGAGTTTCCCAGAGAACTTACATAAACACAGTGGCGTTGGGTCTGAAGA  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCCCAGAGAACTTACATAAACACAGTGGCGTTGGGTCTGAAGA  1198

seq1  ATTC  1188
      ||||
seq2  ATTC  1202

seq1: chr2_122525231_122526214
seq2: B6Ng01-220B06.g_104_1098

seq1  GAGGCTCAGGGAACATGTGGAAGAGGGGGCTGAAAAAAGTTCAGAGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAGGGAACATGTGGAAGAGGGGGCTGAAAAAAGTTCAGAGCTGG  50

seq1  AGGATGGAGAGATCTGCCACAAAAAGACGTCTTCTGTATATGACATAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGAGAGATCTGCCACAAAAAGACGTCTTCTGTATATGACATAGCT  100

seq1  GTTGTACCCATGGACTCGGTGCCACTGTGGTTACCTGATCAAGACCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACCCATGGACTCGGTGCCACTGTGGTTACCTGATCAAGACCTGTA  150

seq1  ACAGGTTTGGCCCTGTCAACATTTCATCCAGGAAGAGAGAAGATTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTGGCCCTGTCAACATTTCATCCAGGAAGAGAGAAGATTTTTAG  200

seq1  GGCTGCACCTCTCCCTGAGGGACTACTGACAGTCAATGGTTTCTGGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCACCTCTCCCTGAGGGACTACTGACAGTCAATGGTTTCTGGGGAG  250

seq1  AAGGGTGTCACTCTCTTCAGTGGTGTACTCACTGCTAAGTTTCCCATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTCACTCTCTTCAGTGGTGTACTCACTGCTAAGTTTCCCATGCT  300

seq1  TCATAAGTCATTTTCTTCAATGCTCACACAAACTGTCCCAATTAAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGTCATTTTCTTCAATGCTCACACAAACTGTCCCAATTAAAGTCA  350

seq1  GTGAGTGGGTCACATACCCAAAACGACAGGAAAGTGTGAGCCTTGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGGTCACATACCCAAAACGACAGGAAAGTGTGAGCCTTGCTGGG  400

seq1  AAAAAGGGTTCCAGTGTGAAAGGGAGCAGGGATGTAAGAGAGGGGGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGTTCCAGTGTGAAAGGGAGCAGGGATGTAAGAGAGGGGGTGTG  450

seq1  TAAAATGATTAAAATTCATTATAAGCAAGTGTAAAATATTGAAGAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGATTAAAATTCATTATAAGCAAGTGTAAAATATTGAAGAATTTT  500

seq1  TAAAATGCAATTAAAAATTCAACAAAAGCTCACTTACTATGTCTAATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCAATTAAAAATTCAACAAAAGCTCACTTACTATGTCTAATTTG  550

seq1  TATCATTTACTGTTTTAGGTATCAGGATGTCAGCTTATATTTCAGTC-AA  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATCATTTACTGTTTTAGGTATCAGGATGTCAGCTTATATTTCAGTCAAA  600

seq1  AAAATTAAAATAATAAAAGACATGTAAATAGAG-TTCAAGTGGGGAAAAT  648
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAATTAAAATAATAAAAGACATGTAAATAGAGTTTCAAGTGGGGAAAAT  650

seq1  AAGATGCAGAGGTTTATCCCAATAGTGAAAAACAAGTC-TTTCAGAGATG  697
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGATGCAGAGGTTTATCCCAATAGTGAAAAACAAGTCTTTTCAGAGATG  700

seq1  TCTTTTGAAATGAAG-TATGACTGACTAACAAGCAGTCAAGGCACAGTCT  746
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAAATGAAGTTATGACTGACTAACAAGCAGTCAAGGCACAGTCT  750

seq1  GGGAAAAGGCAGGAATATAAAAGCTCAGGCGAGAGGCTAGAGAGGCTCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGGCAGGAATATAAAAGCTCAGGCGAGAGGCTAGAGAGGCTCAG  800

seq1  TGGTTAGGAGAACTTGCTACT--CTTGTTCTGGTTCCCAGCCCCTAGACC  844
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  TGGTTAGGAGAACTTGCTACTTCTTTGTTCTGGTTCCCAGCCCCTAGACC  850

seq1  AGGAAGTTCACACTCACCTG-AAGCTTCAGC-TCTAGGGG-ATCTGATGC  891
      |||||||||||||||||||| |||||||||| || ||||| |||||||||
seq2  AGGAAGTTCACACTCACCTGAAAGCTTCAGCTTCAAGGGGAATCTGATGC  900

seq1  CTCTAGGCACTGTACTCACTTACCAGCACACACTCACCCTCCAGTGACCC  941
      ||||| |||||||||||| ||||| ||||||||||||||||||  |||||
seq2  CTCTA-GCACTGTACTCAATTACCTGCACACACTCACCCTCCAAGGACCC  949

seq1  A-TACCCTC-CCCACACATACAC-ATAATTAAAACTAAATATTTTT  984
      | ||||||| |||||| |||||| |||| ||||   ||||||||||
seq2  ATTACCCTCTCCCACAAATACACAATAACTAAACTAAAATATTTTT  995