BAC Information

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BAC

Clone NameB6Ng01-220D11
Chromosome2 (Build37)
Map Location 154,465,339 - 154,466,377
singlet/doubletsinglet
Overlap geneZfp341
Upstream gene7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4
Downstream geneChmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220D11.bB6Ng01-220D11.g
ACCGA035833GA035834
length7401,052
definitionB6Ng01-220D11.b B6Ng01-220D11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccaaacaactaagcctgttgccaagacagcacctatgtaactca
attgaacagagagaagttaagctgatgcctacatagagccttcaccccta
ctctcagtagcaggccaatctctgagctgaaagccagcctaatttataga
gtgtttcaggacaagcaaccctatacaaagaaaccctatctcaaaaaata
taaaaaaagactaatgctattctgttatactcttagatcagtgccttggt
cagccatcatcagaggcgcttcctcctacaccagatacaaacacatacag
agacccacagcaagacattaaacagagtggaacactctggaatactcagc
cctaaacgagaggtctccctcaagtccctgtagaaaaaggctgcaaaagc
agaaaagccagagggtgtggaggacacaggccctgcagatcagcatgctc
aaagctcatatgaactcagagggaggcagcaagcacaggtctgcaccagg
tcctctgctggctatctagcttccagtcgagaggtttcatgggattcctg
agtgcgggaatgagcggatctctgactcttgggccttctcttggacactt
ctttctgttgatttgttttgtctctgatgtgttcttattattgtccctta
aaggttttttggttttctaacaagaggcaggaagggagtgaatctggatg
ggaagagaggtgggaaggaactgggaggagtagggggagg
gaattcctgcctccaattcccaaatgctggggctacatgtgctgtgacac
cgggcgataaatcatattttcaaaaggaaaaaaaagggagtgggggtcct
aggtgtgatacaagccagcacctgggaaacatggtggaaggttgctatga
attaaggctagcctcagctgcacaccagccagtcaggccagtggagcaac
accctgactcaaacaaacaacaaaaagaaaggaaaacaaaaacagcaaaa
acaaaaacaaaacaaaacaaacaaacccaagaaccaaatacagtcagtgg
taggcatgagagtcacttcagtggcttggggacattccataggcaggtca
agtcgagttaattctgaggacacacagcgaccaactgccaaagccaccag
aaaagcttaatctacctgctgaagggcaaatctttcatttaagtcattgt
cactttgggtttctgctcactgctgaacaatacagcaaagaggactgagc
agtctctcgctaagtacctctgtgttccaagaacagtgcatgatagattc
ttcttttatttgacccttactaagagtccaggagaaaactggcacagtgg
ccctggtctagaattgcagctctctcaggcaagaggctcgcttcaaacat
aatgccgatttcagcgccacagtgagttcgaggttggcttgggttacatg
tggaaacaaacaaacaaacaaacaaacaaaatgggaggaggaaggggagg
ggatataactgagctgcccgagtcttgcctagcatcgaggctcttagttt
ggtccccacactgcataatttgaaagtgcggtggaacaaatgttatccta
gcatcaggaggtaaagatcagagttcagggtcaccctcagctacacagag
agttcacggccagcctgaactacataggagttgcttaagaggacgtggaa
gacaaggtaatttaagggccattcctttggcttaccacaggggaatccag
ccaggtactaataggagacagtgagtgggaagatcaacacatggaggggg
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154465339_154466377
seq2: B6Ng01-220D11.g_64_1115 (reverse)

seq1  TGCCCCCTCCCT-TGGTGTGTCTCCCACTCACTGTCTCCTA-TAGT-CCT  47
      |||||||||| | || ||    ||||||||||||||||||| |||| |||
seq2  TGCCCCCTCCATGTGTTGATCTTCCCACTCACTGTCTCCTATTAGTACCT  50

seq1  GGCT-GATTCCCCTGTG--TAGCCAA--GGATGGCCCTT-AATTACCTTG  91
      |||| ||||||||||||   ||||||  | ||||||||| ||||||||||
seq2  GGCTGGATTCCCCTGTGGTAAGCCAAAGGAATGGCCCTTAAATTACCTTG  100

seq1  TCTT-CACGT-CTCTTAAGC-ACTCCTATGTAGTTCAGGCTGGCCGTGAA  138
      |||| ||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TCTTCCACGTCCTCTTAAGCAACTCCTATGTAGTTCAGGCTGGCCGTGAA  150

seq1  CTCTCTGTGTAGCTGAGGGTGACCCTGAACTCTGATCTTTACCTCCTGAT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTAGCTGAGGGTGACCCTGAACTCTGATCTTTACCTCCTGAT  200

seq1  GCTAGGATAACATTTGTTCCACCGCACTT--CAATTATGCAGTGTTGGGG  236
      |||||||||||||||||||||||||||||   |||||||||||| |||||
seq2  GCTAGGATAACATTTGTTCCACCGCACTTTCAAATTATGCAGTG-TGGGG  249

seq1  ACCAAACTAAGAGCCTCGATGCTAGGCAAGACTCGGGCAGCTCAGTTATA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTAAGAGCCTCGATGCTAGGCAAGACTCGGGCAGCTCAGTTATA  299

seq1  TCCCCTCCCCTTCCTCCTCCCATTTTGTTTGTTTGTTTGTTTGTTTGTTT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCTTCCTCCTCCCATTTTGTTTGTTTGTTTGTTTGTTTGTTT  349

seq1  CCACATGTAACCCAAGCCAACCTCGAACTCACTGTGGCGCTGAAATCGGC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGTAACCCAAGCCAACCTCGAACTCACTGTGGCGCTGAAATCGGC  399

seq1  ATTATGTTTGAAGCGAGCCTCTTGCCTGAGAGAGCTGCAATTCTAGACCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTTGAAGCGAGCCTCTTGCCTGAGAGAGCTGCAATTCTAGACCA  449

seq1  GGGCCACTGTGCCAGTTTTCTCCTGGACTCTTAGTAAGGGTCAAATAAAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACTGTGCCAGTTTTCTCCTGGACTCTTAGTAAGGGTCAAATAAAA  499

seq1  GAAGAATCTATCATGCACTGTTCTTGGAACACAGAGGTACTTAGCGAGAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATCTATCATGCACTGTTCTTGGAACACAGAGGTACTTAGCGAGAG  549

seq1  ACTGCTCAGTCCTCTTTGCTGTATTGTTCAGCAGTGAGCAGAAACCCAAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCAGTCCTCTTTGCTGTATTGTTCAGCAGTGAGCAGAAACCCAAA  599

seq1  GTGACAATGACTTAAATGAAAGATTTGCCCTTCAGCAGGTAGATTAAGCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATGACTTAAATGAAAGATTTGCCCTTCAGCAGGTAGATTAAGCT  649

seq1  TTTCTGGTGGCTTTGGCAGTTGGTCGCTGTGTGTCCTCAGAATTAACTCG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTGGCTTTGGCAGTTGGTCGCTGTGTGTCCTCAGAATTAACTCG  699

seq1  ACTTGACCTGCCTATGGAATGTCCCCAAGCCACTGAAGTGACTCTCATGC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACCTGCCTATGGAATGTCCCCAAGCCACTGAAGTGACTCTCATGC  749

seq1  CTACCACTGACTGTATTTGGTTCTTGGGTTTGTTTGTTTTGTTTTGTTTT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTGACTGTATTTGGTTCTTGGGTTTGTTTGTTTTGTTTTGTTTT  799

seq1  TGTTTTTGCTGTTTTTGTTTTCCTTTCTTTTTGTTGTTTGTTTGAGTCAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGCTGTTTTTGTTTTCCTTTCTTTTTGTTGTTTGTTTGAGTCAG  849

seq1  GGTGTTGCTCCACTGGCCTGACTGGCTGGTGTGCAGCTGAGGCTAGCCTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGCTCCACTGGCCTGACTGGCTGGTGTGCAGCTGAGGCTAGCCTT  899

seq1  AATTCATAGCAACCTTCCACCATGTTTCCCAGGTGCTGGCTTGTATCACA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATAGCAACCTTCCACCATGTTTCCCAGGTGCTGGCTTGTATCACA  949

seq1  CCTAGGACCCCCACTCCCTTTTTTTTCCTTTTGAAAATATGATTTATCGC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACCCCCACTCCCTTTTTTTTCCTTTTGAAAATATGATTTATCGC  999

seq1  CCGGTGTCACAGCACATGTAGCCCCAGCATTTGGGAATTGGAGGCAGGAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGTCACAGCACATGTAGCCCCAGCATTTGGGAATTGGAGGCAGGAA  1049

seq1  TTC  1039
      |||
seq2  TTC  1052