BAC Information

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BAC

Clone NameB6Ng01-220I21
Chromosome2 (Build37)
Map Location 64,337,696 - 64,490,362
singlet/doubletdoublet
Overlap geneLOC620544
Upstream geneEG667257, Fign
Downstream geneLOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220I21.bB6Ng01-220I21.g
ACCGA036083GA036084
length1,1631,003
definitionB6Ng01-220I21.b B6Ng01-220I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,337,696 - 64,338,808)(64,489,355 - 64,490,362)
sequence
gaattctttgtttagctctgtaccccattttaatatgattatttggttct
ctggagtctaacttcttgagtgctttgtatatattggatatatacaaagc
cctacatgatataaatgtattatataaatatgtattatttgcatgtattg
catatatagccctctatagagttgataaagatcttttcccaatctgtggg
ttgctgttttgctgttttgtcctattgacagtgtcctttgctttacagaa
acttttcaattttatgatgtcccatttgtcaattgttgatctttgagcat
aagacatcggtgttctgttcaggaaatttttccctgtgccagtgtgttca
aggttctttcccactttctcttttattaaattcagcatatctggtttaag
ggaaggtcctagatccacctggacttgagctttgtacaacgagataagaa
tggatcaatttgcattcttctatatgccaaccaccagttgaaacagcatc
atttgttgaaaatgttgtcttattgtcaaaagttctagctagtggttatt
tttctgtagtgattaaggtttttctaggaatttttctttcatgtgaaaac
caggatcatgaattgagaagatgataacacaaagacggagtgtgctttca
ttacattacaaaaagatttaagttctcagcatggcttattactctgaggc
aaactttgtctcaatgttaggaaggttatttattatttatgtattcactt
tataacacaatatctatcatcccttcttcccctgcctgtaccccctcatg
caagtctttctcccattccaccttcctcttctcttttgagaaagggagag
cccccttgtgagtgtcattgcccacactggcacccccttgcaatcctgaa
cattaagtccctgtgagactatgtacatcctctcctagtaaggccagaca
agggtgtctatttagagacaaaggactcataagcaggcagacaacaggct
caaagacaactccctgctacagtagtagggaggacctgtatgaagaacta
agctgctcatctgaataacattatgtttcagaggcctaggtccatccatg
cctgaatctttggttggtgaatcagcctctaaggaacttcttaagggtcc
cggattagttgac

gaattcataaagaaggccagtgtgctgtttgtgttggaaaaatataacta
cccttacattttaataactgaacttatgttactctggagagaccaggaac
tagatgataaataataaaaattcagcttgttaataatacactattgactg
aaataaagtgactcatttattcaacttacccacacgggctcagaaaaaca
aaataaccccagaggtatgtcttgcgggtattaaaatatattttcataac
tgaatgatggtataaaataggttcatatttttactccttaaatataataa
ctgcacagatgaagtctttgagaaacatgataatttttatttctgtgttc
cttgcaaaactttgctgactgatgcatggttgggggtactttgtttgagt
catttaatcctgaatggtagacattacactttagcaatatattctctttt
gtattgaatttctttctttcttttttttaattgtttgagaattttactcc
tatatatgatatgttttggtcctttttatcagtacggtggtgtggtgcat
agagagggagagacagaaccaaagagctgctttctctgtgtatgatcgtg
cagatttcagtgctgatgtattctgaaacgttggctttgtgtgagagtgc
acagcagcttccatgagccaccctctcccctttgcgtcttcactgtgagt
tctagaactgtcagagctcaatcttttgtgcagatgggaaaaactcatcc
agttactgggcttaagatttatctctaaaactggaagtttgactcagcaa
cacagagatcctgtttttgcagagaaccaagattcagttcccagcactca
tgtcagcttgtaactgcttgtaacacaattgaaggaatcccagctctctc
ttctagcctctgtggatgcctgtatgcctggatacaatgcctatagcatg
tgcacgtacacacacacacacacacacacacacacacacacaacacacac
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_64337696_64338808
seq2: B6Ng01-220I21.b_90_1212

seq1  ATTTGGTTCTCTGGAGTCTAACTTCTTGAGTGCTTTGTATATATTGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTCTCTGGAGTCTAACTTCTTGAGTGCTTTGTATATATTGGATA  50

seq1  TATACAAAGCCCTACATGATATAAATGTATTATATAAATATGTATTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAGCCCTACATGATATAAATGTATTATATAAATATGTATTATTT  100

seq1  GCATGTATTGCATATATAGCCCTCTATAGAGTTGATAAAGATCTTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATTGCATATATAGCCCTCTATAGAGTTGATAAAGATCTTTTCCC  150

seq1  AATCTGTGGGTTGCTGTTTTGCTGTTTTGTCCTATTGACAGTGTCCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGGGTTGCTGTTTTGCTGTTTTGTCCTATTGACAGTGTCCTTTG  200

seq1  CTTTACAGAAACTTTTCAATTTTATGATGTCCCATTTGTCAATTGTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGAAACTTTTCAATTTTATGATGTCCCATTTGTCAATTGTTGAT  250

seq1  CTTTGAGCATAAGACATCGGTGTTCTGTTCAGGAAATTTTTCCCTGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCATAAGACATCGGTGTTCTGTTCAGGAAATTTTTCCCTGTGCC  300

seq1  AGTGTGTTCAAGGTTCTTTCCCACTTTCTCTTTTATTAAATTCAGCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTCAAGGTTCTTTCCCACTTTCTCTTTTATTAAATTCAGCATAT  350

seq1  CTGGTTTAAGGGAAGGTCCTAGATCCACCTGGACTTGAGCTTTGTACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTAAGGGAAGGTCCTAGATCCACCTGGACTTGAGCTTTGTACAAC  400

seq1  GAGATAAGAATGGATCAATTTGCATTCTTCTATATGCCAACCACCAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGAATGGATCAATTTGCATTCTTCTATATGCCAACCACCAGTTG  450

seq1  AAACAGCATCATTTGTTGAAAATGTTGTCTTATTGTCAAAAGTTCTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCATCATTTGTTGAAAATGTTGTCTTATTGTCAAAAGTTCTAGCT  500

seq1  AGTGGTTATTTTTCTGTAGTGATTAAGGTTTTTCTAGGAATTTTTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTATTTTTCTGTAGTGATTAAGGTTTTTCTAGGAATTTTTCTTTC  550

seq1  ATGTGAAAACCAGGATCATGAATTGAGAAGATGATAACACAAAGACGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAACCAGGATCATGAATTGAGAAGATGATAACACAAAGACGGAG  600

seq1  TGTGCTTTCATTACATTACAAAAAGATTTAAGTTCTCAGCATGGCTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTCATTACATTACAAAAAGATTTAAGTTCTCAGCATGGCTTATT  650

seq1  ACTCTGAGGCAAACTTTGTCTCAATGTTAGGAAGGTTATTTATTATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGGCAAACTTTGTCTCAATGTTAGGAAGGTTATTTATTATTTAT  700

seq1  GTATTCACTTTATAACACAATATCTATCATCCCTTCTTCCCCTGCCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCACTTTATAACACAATATCTATCATCCCTTCTTCCCCTGCCTGTA  750

seq1  CCCCCTCATGCAAGTCTTTCTCCCATTCCACCTTCCTCTTCTCTTTTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCATGCAAGTCTTTCTCCCATTCCACCTTCCTCTTCTCTTTTGAG  800

seq1  -AAGGGAGAGCCCCCTTGTGAGTGTCATTGCCCACACTGGCACCCCCTTG  849
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAGCCCCCTTGTGAGTGTCATTGCCCACACTGGCACCCCCTTG  850

seq1  CAATCCTGAACATTAAGTCCCTGTGAGACTATGTACATCCTCTCCTAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGAACATTAAGTCCCTGTGAGACTATGTACATCCTCTCCTAGTA  900

seq1  AGGCCAGACAAGGGTGTCTATTTAGAGACAAAGGACCCATAAGCAGGCAG  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGCCAGACAAGGGTGTCTATTTAGAGACAAAGGACTCATAAGCAGGCAG  950

seq1  ACAACAGGCTCAAAGACAAC-CCCTGCTACAGTAGTAGGGA-GACCTGTA  997
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  ACAACAGGCTCAAAGACAACTCCCTGCTACAGTAGTAGGGAGGACCTGTA  1000

seq1  TGAAG-ACTAAGCTGCTCATCTGA--TACA-TATG-TTCAGAGGGCCTAG  1042
      ||||| ||||||||||||||||||   ||| |||| |||||| |||||||
seq2  TGAAGAACTAAGCTGCTCATCTGAATAACATTATGTTTCAGA-GGCCTAG  1049

seq1  GTCCATCCCATGCTTG-ATCTTTGGTTGGTGATTCAGTCTCT-AGGAGTC  1090
      |||||| |||||| || ||||||||||||||| |||| |||| ||||   
seq2  GTCCAT-CCATGCCTGAATCTTTGGTTGGTGAATCAGCCTCTAAGGAACT  1098

seq1  TC-TAAGGGT-CCAGATTAGTTGAC  1113
      || ||||||| || |||||||||||
seq2  TCTTAAGGGTCCCGGATTAGTTGAC  1123


seq1: chr2_64489355_64490362
seq2: B6Ng01-220I21.g_66_1068 (reverse)

seq1  AGAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAC  50
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAG-TGTGTGT-TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAC  48

seq1  GTGCACATGCCTATAGGCATTTGTATTCCAGGCATACAGGCATCCACAGA  100
      ||||||||| ||||||||| ||||| ||||||||||||||||||||||||
seq2  GTGCACATG-CTATAGGCA-TTGTA-TCCAGGCATACAGGCATCCACAGA  95

seq1  GGCTAGAAGAGAGAGCTGGGATTCCTTCAATTGTGTTACAAGCAGTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAAGAGAGAGCTGGGATTCCTTCAATTGTGTTACAAGCAGTTACA  145

seq1  AGCTGACATGAGTGCTGGGAACTGAATCTTGGTTCTCTGCAAAAACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACATGAGTGCTGGGAACTGAATCTTGGTTCTCTGCAAAAACAGGA  195

seq1  TCTCTGTGTTGCTGAGTCAAACTTCCAGTTTTAGAGATAAATCTTAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTTGCTGAGTCAAACTTCCAGTTTTAGAGATAAATCTTAAGCC  245

seq1  CAGTAACTGGATGAGTTTTTCCCATCTGCACAAAAGATTGAGCTCTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTGGATGAGTTTTTCCCATCTGCACAAAAGATTGAGCTCTGACA  295

seq1  GTTCTAGAACTCACAGTGAAGACGCAAAGGGGAGAGGGTGGCTCATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGAACTCACAGTGAAGACGCAAAGGGGAGAGGGTGGCTCATGGAA  345

seq1  GCTGCTGTGCACTCTCACACAAAGCCAACGTTTCAGAATACATCAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTGCACTCTCACACAAAGCCAACGTTTCAGAATACATCAGCACT  395

seq1  GAAATCTGCACGATCATACACAGAGAAAGCAGCTCTTTGGTTCTGTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGCACGATCATACACAGAGAAAGCAGCTCTTTGGTTCTGTCTCT  445

seq1  CCCTCTCTATGCACCACACCACCGTACTGATAAAAAGGACCAAAACATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTATGCACCACACCACCGTACTGATAAAAAGGACCAAAACATAT  495

seq1  CATATATAGGAGTAAAATTCTCAAACAATTAAAAAAAAGAAAGAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAGGAGTAAAATTCTCAAACAATTAAAAAAAAGAAAGAAAGAAA  545

seq1  TTCAATACAAAAGAGAATATATTGCTAAAGTGTAATGTCTACCATTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACAAAAGAGAATATATTGCTAAAGTGTAATGTCTACCATTCAGG  595

seq1  ATTAAATGACTCAAACAAAGTACCCCCAACCATGCATCAGTCAGCAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGACTCAAACAAAGTACCCCCAACCATGCATCAGTCAGCAAAGT  645

seq1  TTTGCAAGGAACACAGAAATAAAAATTATCATGTTTCTCAAAGACTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGGAACACAGAAATAAAAATTATCATGTTTCTCAAAGACTTCAT  695

seq1  CTGTGCAGTTATTATATTTAAGGAGTAAAAATATGAACCTATTTTATACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGTTATTATATTTAAGGAGTAAAAATATGAACCTATTTTATACC  745

seq1  ATCATTCAGTTATGAAAATATATTTTAATACCCGCAAGACATACCTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCAGTTATGAAAATATATTTTAATACCCGCAAGACATACCTCTGG  795

seq1  GGTTATTTTGTTTTTCTGAGCCCGTGTGGGTAAGTTGAATAAATGAGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTTGTTTTTCTGAGCCCGTGTGGGTAAGTTGAATAAATGAGTCA  845

seq1  CTTTATTTCAGTCAATAGTGTATTATTAACAAGCTGAATTTTTATTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCAGTCAATAGTGTATTATTAACAAGCTGAATTTTTATTATTT  895

seq1  ATCATCTAGTTCCTGGTCTCTCCAGAGTAACATAAGTTCAGTTATTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTAGTTCCTGGTCTCTCCAGAGTAACATAAGTTCAGTTATTAAAA  945

seq1  TGTAAGGGTAGTTATATTTTTCCAACACAAACAGCACACTGGCCTTCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGGTAGTTATATTTTTCCAACACAAACAGCACACTGGCCTTCTTT  995

seq1  ATGAATTC  1008
      ||||||||
seq2  ATGAATTC  1003


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