BAC Information

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BAC

Clone NameB6Ng01-220I22
Chromosome2 (Build37)
Map Location 92,269,408 - 92,392,360
singlet/doubletdoublet
Overlap geneCry2, Slc35c1, LOC100042775
Upstream gene1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1
Downstream geneLOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220I22.bB6Ng01-220I22.g
ACCGA036085GA036086
length1,085999
definitionB6Ng01-220I22.b B6Ng01-220I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,391,274 - 92,392,360)(92,269,408 - 92,270,409)
sequence
gaattctcttttctccccactccagtattatcacctttccatcttcacct
taagctctaccagtgattcctgtcccacattaaccctaagccatgacatc
ccaagagtgcaccagcaatgctggtttgtccatgtcctcaaggttccagt
ttacctagttcctcgggagctcatctatggctcatcgacaacttaattcc
ttttcagttggcaactggttcagcctcagccacctccacagggcacattc
atcttggccaaacaatttgatgaagacaacagaatacaacattgctcggt
aaacacagaatcagaaaagagaaagtagtggctttcccaggaggttttgc
caacaaaaagacaagtgttgggacatctgtccaggtggttggttatccca
tcacagggtcatcccacactcaagtcacctgttttgattgaatgactaag
aaccagaagccccaggcaaattttgtcgatatgatgggcctcataacact
catgtccaatgggtgtgtgtgcaggctggtgggacagttgataaactgtg
gctgtgtgatttgccctggccctattccaacaggctccatgtcattcatc
cctgtttaaatggtgggaaacaggacaaaaggtagtgccctttgatggac
actaatagcagaaaatagagaaagtcaattcatatagcctggtcaggatc
aggactcagaatgcatctaaaaagactgatgcagcaggcagggctgagat
ttactaaggagactcccatccatcctgctcttagatcactttccctgagt
ggactgccttgctccataacagggcagatttctagaaacaaaaataccag
atgactgagattttctctgtctacagcttcctaggactgtgttcataact
aaattacaatgtccaggaaatgagtgatttaatttctacatactgtcaga
gatattgatgactttcttgcaggctcaaagagaggccaagcaggagtagg
ggagttcaacacacagagcggaaaaggtgtgtgtgggggttacctggaga
cgaagagggatacagtcaatgcaggacctgctggc
gaattcacttgttcataaaaactcaagaagttccactgtggcatgcactt
caacttgacctcaatattggtactctgtacatttttgtttcaactttgct
tttactgggttctacctcaacccctaagaaacttttaactagtggggtgg
tagtggcccttgcctttaatcccagcccttgggaggcagaggcaggcgga
tctctatgagccagcatggtctatagcgtgagtttcaggacagacaaact
acagtgaaaccatctcaagctccaaccaccaccacgaaagggcaatgctg
agctacttccaccatggtccccaggatggacccagaacagcttcccagga
ggcaataggaaggagacagggagatccctgagtagtttccagcccccagg
cagccacagacagggaggccactgccatgacatcaccttttgtatctgct
gctctgcaaagcaccgaaagaactggagctagctgctcctggagagtgcc
caccagacaggcctaggctgtcttagccagggagaactggcctttccctc
tgtgctcccttcgagccctcctctgcccctgctcacttctctttacttaa
ggaggggggaacgcaaaggaaaacaggtgagcactggaagggttggcgtc
ggggctgatcgtcacgcttgctccaaaggggagatcacagggccacagtg
cagagcacaccccctgagggagcagtcacagaccctaagggtgcggccag
agctccaccttttgaatagtccttgctccagaattacgtaagttccctgg
agccaggggagacagaactggagaaaaccaaattgggatttccaaaaata
cagggaaaactgtcatccagcaactctaggaggcgatcccttcagaacaa
gtgagttccatacttccactcagagagatcttttgggggacagagtggcc
tgtgtgagaaacactgatttatctgttaatggagtggaggtaggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_92391274_92392360
seq2: B6Ng01-220I22.b_49_1133 (reverse)

seq1  GCCAGCAGCTCCTGCAATGACTGTATCCCTCCTTCGTTCCTCCAGGTAAC  50
      |||||||| ||||||| ||||||||||||| ||||||  |||||||||||
seq2  GCCAGCAGGTCCTGCATTGACTGTATCCCT-CTTCGT--CTCCAGGTAAC  47

seq1  CCCCACACACACCCTTTTCCGCTCTGTGTGTTGAACTCCCCCTACTCCTG  100
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  CCCCACACACA-CCTTTTCCGCTCTGTGTGTTGAACT-CCCCTACTCCTG  95

seq1  CTT-GCCTCTCTTTGGGCTTGCAAG-AAGTCATCAATATCTCTGACAGTA  148
      ||| ||||||||||| || |||||| ||||||||||||||||||||||||
seq2  CTTGGCCTCTCTTTGAGCCTGCAAGAAAGTCATCAATATCTCTGACAGTA  145

seq1  TGTAG-AATTAAATCACTCATTTCCTGGACATTGTAATTTAGTTATGAAC  197
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAATTAAATCACTCATTTCCTGGACATTGTAATTTAGTTATGAAC  195

seq1  ACAGTCCTAGGAAGCTGTAGACAGAGAAAATCTCAGTCATCTGGTATTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTAGGAAGCTGTAGACAGAGAAAATCTCAGTCATCTGGTATTTT  245

seq1  TGTTTCTAGAAATCTGCCCTGTTATGGAGCAAGGCAGTCCACTCAGGGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAGAAATCTGCCCTGTTATGGAGCAAGGCAGTCCACTCAGGGAA  295

seq1  AGTGATCTAAGAGCAGGATGGATGGGAGTCTCCTTAGTAAATCTCAGCCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTAAGAGCAGGATGGATGGGAGTCTCCTTAGTAAATCTCAGCCC  345

seq1  TGCCTGCTGCATCAGTCTTTTTAGATGCATTCTGAGTCCTGATCCTGACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTGCATCAGTCTTTTTAGATGCATTCTGAGTCCTGATCCTGACC  395

seq1  AGGCTATATGAATTGACTTTCTCTATTTTCTGCTATTAGTGTCCATCAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATATGAATTGACTTTCTCTATTTTCTGCTATTAGTGTCCATCAAA  445

seq1  GGGCACTACCTTTTGTCCTGTTTCCCACCATTTAAACAGGGATGAATGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTACCTTTTGTCCTGTTTCCCACCATTTAAACAGGGATGAATGAC  495

seq1  ATGGAGCCTGTTGGAATAGGGCCAGGGCAAATCACACAGCCACAGTTTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCTGTTGGAATAGGGCCAGGGCAAATCACACAGCCACAGTTTAT  545

seq1  CAACTGTCCCACCAGCCTGCACACACACCCATTGGACATGAGTGTTATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCCCACCAGCCTGCACACACACCCATTGGACATGAGTGTTATGA  595

seq1  GGCCCATCATATCGACAAAATTTGCCTGGGGCTTCTGGTTCTTAGTCATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATCATATCGACAAAATTTGCCTGGGGCTTCTGGTTCTTAGTCATT  645

seq1  CAATCAAAACAGGTGACTTGAGTGTGGGATGACCCTGTGATGGGATAACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAAACAGGTGACTTGAGTGTGGGATGACCCTGTGATGGGATAACC  695

seq1  AACCACCTGGACAGATGTCCCAACACTTGTCTTTTTGTTGGCAAAACCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTGGACAGATGTCCCAACACTTGTCTTTTTGTTGGCAAAACCTC  745

seq1  CTGGGAAAGCCACTACTTTCTCTTTTCTGATTCTGTGTTTACCGAGCAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGCCACTACTTTCTCTTTTCTGATTCTGTGTTTACCGAGCAAT  795

seq1  GTTGTATTCTGTTGTCTTCATCAAATTGTTTGGCCAAGATGAATGTGCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTCTGTTGTCTTCATCAAATTGTTTGGCCAAGATGAATGTGCCC  845

seq1  TGTGGAGGTGGCTGAGGCTGAACCAGTTGCCAACTGAAAAGGAATTAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGTGGCTGAGGCTGAACCAGTTGCCAACTGAAAAGGAATTAAGT  895

seq1  TGTCGATGAGCCATAGATGAGCTCCCGAGGAACTAGGTAAACTGGAACCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGATGAGCCATAGATGAGCTCCCGAGGAACTAGGTAAACTGGAACCT  945

seq1  TGAGGACATGGACAAACCAGCATTGCTGGTGCACTCTTGGGATGTCATGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACATGGACAAACCAGCATTGCTGGTGCACTCTTGGGATGTCATGG  995

seq1  CTTAGGGTTAATGTGGGACAGGAATCACTGGTAGAGCTTAAGGTGAAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGTTAATGTGGGACAGGAATCACTGGTAGAGCTTAAGGTGAAGAT  1045

seq1  GGAAAGGTGATAATACTGGAGTGGGGAGAAAAGAGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTGATAATACTGGAGTGGGGAGAAAAGAGAATTC  1085

seq1: chr2_92269408_92270409
seq2: B6Ng01-220I22.g_66_1064

seq1  GAATTCACTTGTTCATAAAAACTCAAGAAGTTCCACTGTGGCATGCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGTTCATAAAAACTCAAGAAGTTCCACTGTGGCATGCACTT  50

seq1  CAACTTGACCTCAATATTGGTACTCTGTACATTTTTGTTTCAACTTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGACCTCAATATTGGTACTCTGTACATTTTTGTTTCAACTTTGCT  100

seq1  TTTACTGGGTTCTACCTCAACCCCTAAGAAACTTTTAACTAGTGGGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGGGTTCTACCTCAACCCCTAAGAAACTTTTAACTAGTGGGGTGG  150

seq1  TAGTGGCCCTTGCCTTTAATCCCAGCCCTTGGGAGGCAGAGGCAGGCGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCCCTTGCCTTTAATCCCAGCCCTTGGGAGGCAGAGGCAGGCGGA  200

seq1  TCTCTATGAGCCAGCATGGTCTATAGCGTGAGTTTCAGGACAGACAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGAGCCAGCATGGTCTATAGCGTGAGTTTCAGGACAGACAAACT  250

seq1  ACAGTGAAACCATCTCAAGCTCCAACCACCACCACGAAAGGGCAATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAACCATCTCAAGCTCCAACCACCACCACGAAAGGGCAATGCTG  300

seq1  AGCTACTTCCACCATGGTCCCCAGGATGGACCCAGAACAGCTTCCCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTCCACCATGGTCCCCAGGATGGACCCAGAACAGCTTCCCAGGA  350

seq1  GGCAATAGGAAGGAGACAGGGAGATCCCTGAGTAGTTTCCAGCCCCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAGGAAGGAGACAGGGAGATCCCTGAGTAGTTTCCAGCCCCCAGG  400

seq1  CAGCCACAGACAGGGAGGCCACTGCCATGACATCACCTTTTGTATCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGACAGGGAGGCCACTGCCATGACATCACCTTTTGTATCTGCT  450

seq1  GCTCTGCAAAGCACCGAAAGAACTGGAGCTAGCTGCTCCTGGAGAGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAAAGCACCGAAAGAACTGGAGCTAGCTGCTCCTGGAGAGTGCC  500

seq1  CACCAGACAGGCCTAGGCTGTCTTAGCCAGGGAGAACTGGCCTTTCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGACAGGCCTAGGCTGTCTTAGCCAGGGAGAACTGGCCTTTCCCTC  550

seq1  TGTGCTCCCTTCGAGCCCTCCTCTGCCCCTGCTCACTTCTCTTTACTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCCTTCGAGCCCTCCTCTGCCCCTGCTCACTTCTCTTTACTTAA  600

seq1  GGAGGGGGGAACGCAAAGGAAAACAGGTGAGCACTGGAAGGGTTGGCGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGGAACGCAAAGGAAAACAGGTGAGCACTGGAAGGGTTGGCGTC  650

seq1  GGGGCTGATCGTCACGCTTGCTCC-AAGGGGAGATCACAGGGCCACAGTG  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGGCTGATCGTCACGCTTGCTCCAAAGGGGAGATCACAGGGCCACAGTG  700

seq1  CAGAGCACACCCCCTGAGGGAGCAGTCACAGACCCTAAGGGTGCGGCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACACCCCCTGAGGGAGCAGTCACAGACCCTAAGGGTGCGGCCAG  750

seq1  AGCTCCACCTTTTGAATAGTCCTTGCTCCAGAATTACGTAAGTTCCCTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACCTTTTGAATAGTCCTTGCTCCAGAATTACGTAAGTTCCCTGG  800

seq1  AGCCAGGGGAGACAGAACTGGAGAAAACCAAATTGGGATTTCCAAAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGGAGACAGAACTGGAGAAAACCAAATTGGGATTTCCAAAAATA  850

seq1  CAGGGAAAACTGTCATCCAGCAACTCTAGGAGGCGATCCCTTCAGAACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAACTGTCATCCAGCAACTCTAGGAGGCGATCCCTTCAGAACAA  900

seq1  GTGAGTTCCATACTTCCACTCAGAGAGATCTTTTGGGGGGACAGAAGTGG  949
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  GTGAGTTCCATACTTCCACTCAGAGAGATCTTTT-GGGGGACAG-AGTGG  948

seq1  -CTGTGTTGAGAAACACTTGATTTATCTGTTAATGGAGTGGAGGGTAGGA  998
       ||||| |||||||||| |||||||||||||||||||||||| |||||||
seq2  CCTGTG-TGAGAAACAC-TGATTTATCTGTTAATGGAGTGGA-GGTAGGA  995

seq1  GTGG  1002
      ||||
seq2  GTGG  999