BAC Information

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BAC

Clone NameB6Ng01-220K04
Chromosome2 (Build37)
Map Location 45,440,197 - 45,548,000
singlet/doubletdoublet
Overlap geneLOC100042661
Upstream geneGtdc1, Zeb2
Downstream geneLOC100041337, LOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K04.bB6Ng01-220K04.g
ACCGA036145GA036146
length1,0901,153
definitionB6Ng01-220K04.b B6Ng01-220K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,440,197 - 45,441,297)(45,546,835 - 45,548,000)
sequence
gaattcagacagtgaacatttataatcctaagtagggactatttaaggta
atgagttctgaataatatttattaactatgttttaatgatccatcctttt
ttattaaaaacattaaaatcttttaggagtcacttcataaatgtagtttt
aattcttttactatattcatgggccactgctttcttaagaaaagagatta
ggtgattccggtttaaagaaacaaattactgtgctaatcttcaggtattt
ctctttttgatatgcagtcgacttttcattactgtgctactgaactattt
gccagggatgggcaatctggtgctgaagggagaaagcccagaaaaagact
aaatcttccaaaatagtatagaaagtaggcagagaggcatgccattacac
tacaggtaacacatgtaacacaaggacttttggtaacatttataaacata
gtctcaggattctcagaattatagacctgtgtttctatgtggcatgcaat
gttaagtaaccaggaacaacacagctaccctgttctatagcataaagtat
ttagtttgacattgaagatttttgccaagttgagttgcattgctcgcctt
gtttctggcttcagttcacaagttaggattgagtaacacaaatgtcccta
tctcttgtgataatctgctcttacaggatactactgatttcttgatgagc
caggtacatcacaattagccatgctctgattgtgttctggcattgttcac
aacccctccggatgcattactagcatggtcagcacagacttttgtgtgtg
taaccacagtcggggcactgaagaccttgctagggtttccttctgctaca
ggaatgttttataacctgtctcaacatttgatcctataatgtgctagaaa
atataatgaagtctcggtgggttctttaaatatttctgaatctgtactta
acaacctatgtgcattctatctcttttgttttgaggaaatatgggcatgg
acccctaaccaggctgtatgctgtactcttgtacttttcctatttttaaa
tatttgtgcattgttcaagattcttccttttgtcactctg

gaattcattgaaatttaactcaccgaaaagtaatcccagttgtttagtta
ttaataaagtgtttagtgaaatactgtccatctaaaattagacatgaaaa
tatatttcactagaaagttctctcctctaaataaaatagaataagttgat
tcttggcatggacatatattcaccaaaatataacaatatttattaaagta
aagtaaatgaacacaaggtatatagatagctgcaagttgagaattgaatt
taatcaagtcaaaattatgttaatgacagtgaggtaaagcaatttattga
acaggttatttatacaatgaatctgcaatttgttactgttacacagttac
tgagacttctaatttaaaaggaaaagtcttactgtggctcacagtctaat
tgagcatcttagtcaagatgtgatagactcattgttttggtcattcaggg
atatcactgtacacagtaggaaagaggaggaaatagcttgtctcatggcc
agaaagcaaaaacaaacaaacaaacaaacaaacaaacacccaaaaaacaa
acaaacaaaaaaaccaaatatacaagcaaacaaatgactgaaaacaaaaa
agtcaaagtcccataatttccttcaagaatatatcatcgtttcagtgacc
tcaggggtcacaagtcctaagatgattccaatagcactacctagaaaagc
atgcctattatacatggaccttgggtgtggacctgtccacaatgcaggta
aactcttgagatgcttgcatgcatttgcatttcatattctaaagcatagt
atttgtgtgttttgtcatcccataggatctttctgcacaataaagaacca
ctgagtccagtctgcacagcctaggctttcctgcattttcttagttaaaa
ttgagcaactagccttagaagaaacgcttcttgggtaagcccctgtcacc
aaggcctatgaccttagactgatttacacagggtttccatggtaaaacga
gtgagtcatactctcagcatgtctgacttcaactggtgctaagtacatgc
atacctgctgcaatatataataatacttggagactatttttgtgactatt
attttaattggaattttccttattacagttcatgttgtccatattcctgg
ttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45440197_45441297
seq2: B6Ng01-220K04.b_45_1134

seq1  GAATTCAGACAGTGAACATTTATAATCCTAAGTAGGGACTATTTAAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACAGTGAACATTTATAATCCTAAGTAGGGACTATTTAAGGTA  50

seq1  ATGAGTTCTGAATAATATTTATTAACTATGTTTTAATGATCCATCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCTGAATAATATTTATTAACTATGTTTTAATGATCCATCCTTTT  100

seq1  TTATTAAAAACATTAAAATCTTTTAGGAGTCACTTCATAAATGTAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAACATTAAAATCTTTTAGGAGTCACTTCATAAATGTAGTTTT  150

seq1  AATTCTTTTACTATATTCATGGGCCACTGCTTTCTTAAGAAAAGAGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTTACTATATTCATGGGCCACTGCTTTCTTAAGAAAAGAGATTA  200

seq1  GGTGATTCCGGTTTAAAGAAACAAATTACTGTGCTAATCTTCAGGTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTCCGGTTTAAAGAAACAAATTACTGTGCTAATCTTCAGGTATTT  250

seq1  CTCTTTTTGATATGCAGTCGACTTTTCATTACTGTGCTACTGAACTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTGATATGCAGTCGACTTTTCATTACTGTGCTACTGAACTATTT  300

seq1  GCCAGGGATGGGCAATCTGGTGCTGAAGGGAGAAAGCCCAGAAAAAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGATGGGCAATCTGGTGCTGAAGGGAGAAAGCCCAGAAAAAGACT  350

seq1  AAATCTTCCAAAATAGTATAGAAAGTAGGCAGAGAGGCATGCCATTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCCAAAATAGTATAGAAAGTAGGCAGAGAGGCATGCCATTACAC  400

seq1  TACAGGTAACACATGTAACACAAGGACTTTTGGTAACATTTATAAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTAACACATGTAACACAAGGACTTTTGGTAACATTTATAAACATA  450

seq1  GTCTCAGGATTCTCAGAATTATAGACCTGTGTTTCTATGTGGCATGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGATTCTCAGAATTATAGACCTGTGTTTCTATGTGGCATGCAAT  500

seq1  GTTAAGTAACCAGGAACAACACAGCTACCCTGTTCTATAGCATAAAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTAACCAGGAACAACACAGCTACCCTGTTCTATAGCATAAAGTAT  550

seq1  TTAGTTTGACATTGAAGATTTTTGCCAAGTTGAGTTGCATTGCTCGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGACATTGAAGATTTTTGCCAAGTTGAGTTGCATTGCTCGCCTT  600

seq1  GTTTCTGGCTTCAGTTCACAAGTTAGGATTGAGTAACACAAATGTCCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGCTTCAGTTCACAAGTTAGGATTGAGTAACACAAATGTCCCTA  650

seq1  TCTCTTGTGATAATCTGCTCTTACAGGATACTACTGATTTCTTGATGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTGATAATCTGCTCTTACAGGATACTACTGATTTCTTGATGAGC  700

seq1  CAGGTACATCACAATTAGCCATGCTCTGATTGTGTTCTGGCATTGTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACATCACAATTAGCCATGCTCTGATTGTGTTCTGGCATTGTTCAC  750

seq1  AACCCCTCCGGATGCATTACTAGCATGGTCAGCACAGACTTTTGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTCCGGATGCATTACTAGCATGGTCAGCACAGACTTTTGTGTGTG  800

seq1  TAACCACAGTCGGGGCACTGAAGACCTTGCTAGGGTTTCCTTCTGCTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACAGTCGGGGCACTGAAGACCTTGCTAGGGTTTCCTTCTGCTACA  850

seq1  GGAATGTTTTATAACCTGTCTCAACATTTGATCCTATAATGTGCTAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTTTATAACCTGTCTCAACATTTGATCCTATAATGTGCTAGAAA  900

seq1  ATATAATGAAGTCTCGGTGGGTTCTTTAAATATTTCTGAATCTGTACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATATAATGAAGTCTCGGTGGGTTCTTTAAATATTTCTGAATCTGTAC-TT  949

seq1  AACAACCTATGTGCATTCTATCTCTTTTGTTTTTGAGGAAATAT-GGCAT  999
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  AACAACCTATGTGCATTCTATCTCTTTTG-TTTTGAGGAAATATGGGCAT  998

seq1  GGACCCCTAACCAGGCTGTATTGCTGTACTCTTTGTTACTTTTCCTATTT  1049
      |||||||||||||||||||| ||||||||||||   ||||||||||| ||
seq2  GGACCCCTAACCAGGCTGTA-TGCTGTACTCTT--GTACTTTTCCTA-TT  1044

seq1  TTTAAATATTTTGTTGCATTTGTTCAAAGAATTCTTCCCTTTTGTCACTC  1099
      |||||||||||   |||| ||||||||   |||||| |||||||||||||
seq2  TTTAAATATTT--GTGCA-TTGTTCAA--GATTCTT-CCTTTTGTCACTC  1088

seq1  TG  1101
      ||
seq2  TG  1090


seq1: chr2_45546835_45548000
seq2: B6Ng01-220K04.g_65_1217 (reverse)

seq1  GAACCAGGAAAGTGGACAACATTTGAAATGTAAATAAAGAAAATATCCAA  50
      ||||||||||  |||||||||  |||| ||| ||||| |||||| |||||
seq2  GAACCAGGAATATGGACAACA--TGAACTGT-AATAAGGAAAAT-TCCAA  46

seq1  TAAAAATAATAGTCACAAAAAATAGTCTCCCAAGTATTTATTATATATGC  100
      | |||||||||||||| ||||||||||| ||||||| |||||||||||  
seq2  TTAAAATAATAGTCAC-AAAAATAGTCT-CCAAGTA-TTATTATATATTG  93

seq1  AAACAGGTATGCATGTACTAAGGCACACAGTGGAAGTCAGACATGCTGAG  150
       | |||||||||||||||| | |||| |||| ||||||||||||||||||
seq2  CAGCAGGTATGCATGTACTTA-GCAC-CAGTTGAAGTCAGACATGCTGAG  141

seq1  AGTATTGACTCACTCGTTTTACCATGGAAACCCTGTGTAAATCAGTCTAA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTA-TGACTCACTCGTTTTACCATGGAAACCCTGTGTAAATCAGTCTAA  190

seq1  GGTCATAGGCCTTGGTGACAGGGGCCTTTACCCCAAGAAGCGTTTC-TCT  249
      |||||||||||||||||||||||||  ||| ||||||||||||||| |||
seq2  GGTCATAGGCCTTGGTGACAGGGGC--TTA-CCCAAGAAGCGTTTCTTCT  237

seq1  AAGGCCTAGTTGCTCAATTTTAACTAAGAAAATGCAGGAAAGCCTAGGCT  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGG-CTAGTTGCTCAATTTTAACTAAGAAAATGCAGGAAAGCCTAGGCT  286

seq1  GTGCAGACTGGACTCAGTGGTTCTTTATTGTGCAGAAAGATCCTATGGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGACTGGACTCAGTGGTTCTTTATTGTGCAGAAAGATCCTATGGGA  336

seq1  TGACAAAACACACAAATACTATGCTTTAGAATATGAAATGCAAATGCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAACACACAAATACTATGCTTTAGAATATGAAATGCAAATGCATG  386

seq1  CAAGCATCTCAAGAGTTTACCTGCATTGTGGACAGGTCCACACCCAAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATCTCAAGAGTTTACCTGCATTGTGGACAGGTCCACACCCAAGGT  436

seq1  CCATGTATAATAGGCATGCTTTTCTAGGTAGTGCTATTGGAATCATCTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATAATAGGCATGCTTTTCTAGGTAGTGCTATTGGAATCATCTTA  486

seq1  GGACTTGTGACCCCTGAGGTCACTGAAACGATGATATATTCTTGAAGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGTGACCCCTGAGGTCACTGAAACGATGATATATTCTTGAAGGAA  536

seq1  ATTATGGGACTTTGACTTTTTTGTTTTCAGTCATTTGTTTGCTTGTATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGGACTTTGACTTTTTTGTTTTCAGTCATTTGTTTGCTTGTATAT  586

seq1  TTGGTTTTTTTGTTTGTTTGTTTTTTGGGTGTTTGTTTGTTTGTTTGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTTGTTTGTTTGTTTTTTGGGTGTTTGTTTGTTTGTTTGTTT  636

seq1  GTTTGTTTTTGCTTTCTGGCCATGAGACAAGCTATTTCCTCCTCTTTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTGCTTTCTGGCCATGAGACAAGCTATTTCCTCCTCTTTCCT  686

seq1  ACTGTGTACAGTGATATCCCTGAATGACCAAAACAATGAGTCTATCACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTACAGTGATATCCCTGAATGACCAAAACAATGAGTCTATCACAT  736

seq1  CTTGACTAAGATGCTCAATTAGACTGTGAGCCACAGTAAGACTTTTCCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTAAGATGCTCAATTAGACTGTGAGCCACAGTAAGACTTTTCCTT  786

seq1  TTAAATTAGAAGTCTCAGTAACTGTGTAACAGTAACAAATTGCAGATTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGAAGTCTCAGTAACTGTGTAACAGTAACAAATTGCAGATTCA  836

seq1  TTGTATAAATAACCTGTTCAATAAATTGCTTTACCTCACTGTCATTAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAATAACCTGTTCAATAAATTGCTTTACCTCACTGTCATTAACA  886

seq1  TAATTTTGACTTGATTAAATTCAATTCTCAACTTGCAGCTATCTATATAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGACTTGATTAAATTCAATTCTCAACTTGCAGCTATCTATATAC  936

seq1  CTTGTGTTCATTTACTTTACTTTAATAAATATTGTTATATTTTGGTGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTCATTTACTTTACTTTAATAAATATTGTTATATTTTGGTGAAT  986

seq1  ATATGTCCATGCCAAGAATCAACTTATTCTATTTTATTTAGAGGAGAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCATGCCAAGAATCAACTTATTCTATTTTATTTAGAGGAGAGAA  1036

seq1  CTTTCTAGTGAAATATATTTTCATGTCTAATTTTAGATGGACAGTATTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGTGAAATATATTTTCATGTCTAATTTTAGATGGACAGTATTTC  1086

seq1  ACTAAACACTTTATTAATAACTAAACAACTGGGATTACTTTTCGGTGAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACACTTTATTAATAACTAAACAACTGGGATTACTTTTCGGTGAGT  1136

seq1  TAAATTTCAATGAATTC  1166
      |||||||||||||||||
seq2  TAAATTTCAATGAATTC  1153


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