BAC Information

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BAC

Clone NameB6Ng01-221F01
Chromosome2 (Build37)
Map Location 113,874,105 - 114,024,112
singlet/doubletdoublet
Overlap geneActc1, Aqr, Zfp770
Upstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik
Downstream geneAtpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221F01.bB6Ng01-221F01.g
ACCGA036641GA036642
length1,1491,104
definitionB6Ng01-221F01.b B6Ng01-221F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,022,964 - 114,024,112)(113,874,105 - 113,875,201)
sequence
gaattctgtaaagcagtatagacttgaactcacagagatctacttgcttc
tgcctgccatctgccgagttcaaaggcatgtgccatccagcccattgaga
atagttttaatgttgtgtcaaccatctaaatataattaaatgaaatggtt
tatgatcagagcatgtctgtagtattgctataattcaatgataatgtctt
gttcttaatattttatatttttaccttttttataatcaatttacaaatat
ttatttactgttagggcaggagtctcactagctgagcctggcctgaaatt
gctgaatagcccatattgacctcaaactcacggtctttcctgtgtttaat
gtatgatgggtagctttagaggtgcaccacaataacagggtgtttttttt
ttttataatgacaaagcaacttattggcatatctaataatgaagaaagtt
ggaactgaaagggttattgaatgttaaaaaataaggtttggtcatttttc
agtatagcttatcaagttaaaaaagtactttaaaaacttgtagaatttta
aatatttttaagacttaaatctgtctaaaattagttctatgattataaag
aattcatctaagatggttgttacagtacttgaaaacacaagaaaagtaca
aattctcccatatttttaatctttagcctaaggaaattacttgcttttat
acaaatcttaaaattaatacttcgttggttttgtttgtttaatttttaga
actctgtggaacttaagaatgccatggaactcatcaggatatgccactga
ggaatgtgatggctgaaaacaactttaaaatgctgaagattcagcaatgt
gtagccaacaaactacctaggaacaggccatatatttgcaatatctgctt
caagcactttgaaacaccatcaaaattagctaggcattatctcattcata
cccggtcaaaagccatttgaatgtgatgtgtgccataaaaacttagacaa
ctcgttcatctggagaggcatcagttaactcacaatcttgcctttcagtt
gtatatttgccacgccacttaaaaatttggaagaacatttgtgagcatcc
accagcttccacatgatccttacattatgatgttaaaggtcagaagact
gaattcctctgggttggtgagctgccaacattcaaatctaaaacatatgc
ttcccctacaacacactgctaggaacaggtggggcatgagtctctacaat
gtactaatagatgatccagtacggactgccaagacatagacaactgtgtt
cagtgcctgtttgcaatgaacatttgttgcagccatcaggaatatggaga
tatatcacaaaaagaatgacacatgtttaaatgaaaattagcctactttg
ttttgttttgagatgaatctcactctgtagcccaagcaaaagttgaactc
aagttaatactcctgcctcagtttctgagtactgggattgcaggtgtgag
ctaacacacctggctcatacttttcatttatggactaaaatcagattcca
gcttcatctgtaggaaagctatttggtgacatcaagcgttcagttaccaa
aatgaacagagttgtggttgcattgaatggtaactgacttaagtctagtc
tatcaataatggaacttattagaataaattggctctcttcagtaatcagg
catgctctattcactaactgctcagtctcatcctctactgtgaggtaaac
tcggtgtaacagcctcatttttcactagagcgccttggtctttctcctta
ctgaggtatcaggaggtgagactgagctgagtaagatggcagatgctgac
tcgagacccctgccatgcttctaagtgaaatgggtattactctgggtgat
tgcagaatttctagagaagctgaggctcagcaccaaaagccatcccttac
caatgaaagagggctgggaagagagtctctggacagcggaagcgctcgtt
gccaatggtgatgacctggccgtcaggaagttcatagctcttctccagag
aggaggaagatgcagctgtggccatctcgttctcaaaatccagggcgacg
taacacagtttttcttttatgtcacgggacaatttccacgttcagctgca
gagtacagagggctttcatagtcaagcttctgaggaaaaggatcaaatat
ggggaaggtagtctatctactaatgagcaaagctacaagcatatgtcttg
tgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114022964_114024112
seq2: B6Ng01-221F01.b_31_1179 (reverse)

seq1  AGTCTTCTGA-CTTTAACATCATTATGGTAGGATTCATTGTGAAGCT-GT  48
      |||||||||| |||||||||||| |||  |||| ||||   |||||| ||
seq2  AGTCTTCTGACCTTTAACATCATAATGTAAGGA-TCATGTGGAAGCTGGT  49

seq1  TGATGCTTCACAAATG-TCTTCAAATTTTTAAAGTGGCGTTGGCAAATAT  97
       ||||| ||||||||| ||||| || |||| |||||||| ||||||||| 
seq2  GGATGC-TCACAAATGTTCTTCCAAATTTTTAAGTGGCG-TGGCAAATA-  96

seq1  TACAACTGAAAGGC-AGATTGTGAGTTAACTGATGCCTCTCCAGATGAAC  146
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACAACTGAAAGGCAAGATTGTGAGTTAACTGATGCCTCTCCAGATGAAC  146

seq1  GAGTTGTCTAAAGTTTTTATGGCACACATCACATTCAAATGGCTTTTGAC  196
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCT-AAGTTTTTATGGCACACATCACATTCAAATGGCTTTTGAC  195

seq1  C-GGTATGAATGAGATAATGCCTAGCTAATTTTGATGGTGTTTCAAAGTG  245
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTATGAATGAGATAATGCCTAGCTAATTTTGATGGTGTTTCAAAGTG  245

seq1  CTTGAAGCAGATATTGCAAATATATGGCCTGTTCCTAGGTAGTTTGTTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCAGATATTGCAAATATATGGCCTGTTCCTAGGTAGTTTGTTGG  295

seq1  CTACACATTGCTGAATCTTCAGCATTTTAAAGTTGTTTTCAGCCATCACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATTGCTGAATCTTCAGCATTTTAAAGTTGTTTTCAGCCATCACA  345

seq1  TTCCTCAGTGGCATATCCTGATGAGTTCCATGGCATTCTTAAGTTCCACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGTGGCATATCCTGATGAGTTCCATGGCATTCTTAAGTTCCACA  395

seq1  GAGTTCTAAAAATTAAACAAACAAAACCAACGAAGTATTAATTTTAAGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAAAAATTAAACAAACAAAACCAACGAAGTATTAATTTTAAGAT  445

seq1  TTGTATAAAAGCAAGTAATTTCCTTAGGCTAAAGATTAAAAATATGGGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAAAGCAAGTAATTTCCTTAGGCTAAAGATTAAAAATATGGGAG  495

seq1  AATTTGTACTTTTCTTGTGTTTTCAAGTACTGTAACAACCATCTTAGATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTACTTTTCTTGTGTTTTCAAGTACTGTAACAACCATCTTAGATG  545

seq1  AATTCTTTATAATCATAGAACTAATTTTAGACAGATTTAAGTCTTAAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTATAATCATAGAACTAATTTTAGACAGATTTAAGTCTTAAAAA  595

seq1  TATTTAAAATTCTACAAGTTTTTAAAGTACTTTTTTAACTTGATAAGCTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAATTCTACAAGTTTTTAAAGTACTTTTTTAACTTGATAAGCTA  645

seq1  TACTGAAAAATGACCAAACCTTATTTTTTAACATTCAATAACCCTTTCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAAATGACCAAACCTTATTTTTTAACATTCAATAACCCTTTCAG  695

seq1  TTCCAACTTTCTTCATTATTAGATATGCCAATAAGTTGCTTTGTCATTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTTTCTTCATTATTAGATATGCCAATAAGTTGCTTTGTCATTAT  745

seq1  AAAAAAAAAAAACACCCTGTTATTGTGGTGCACCTCTAAAGCTACCCATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACACCCTGTTATTGTGGTGCACCTCTAAAGCTACCCATC  795

seq1  ATACATTAAACACAGGAAAGACCGTGAGTTTGAGGTCAATATGGGCTATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAAACACAGGAAAGACCGTGAGTTTGAGGTCAATATGGGCTATT  845

seq1  CAGCAATTTCAGGCCAGGCTCAGCTAGTGAGACTCCTGCCCTAACAGTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTTCAGGCCAGGCTCAGCTAGTGAGACTCCTGCCCTAACAGTAA  895

seq1  ATAAATATTTGTAAATTGATTATAAAAAAGGTAAAAATATAAAATATTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTTGTAAATTGATTATAAAAAAGGTAAAAATATAAAATATTAA  945

seq1  GAACAAGACATTATCATTGAATTATAGCAATACTACAGACATGCTCTGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGACATTATCATTGAATTATAGCAATACTACAGACATGCTCTGAT  995

seq1  CATAAACCATTTCATTTAATTATATTTAGATGGTTGACACAACATTAAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACCATTTCATTTAATTATATTTAGATGGTTGACACAACATTAAAA  1045

seq1  CTATTCTCAATGGGCTGGATGGCACATGCCTTTGAACTCGGCAGATGGCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCAATGGGCTGGATGGCACATGCCTTTGAACTCGGCAGATGGCA  1095

seq1  GGCAGAAGCAAGTAGATCTCTGTGAGTTCAAGTCTATACTGCTTTACAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGCAAGTAGATCTCTGTGAGTTCAAGTCTATACTGCTTTACAGA  1145

seq1  ATTC  1149
      ||||
seq2  ATTC  1149

seq1: chr2_113874105_113875201
seq2: B6Ng01-221F01.g_65_1168

seq1  GAATTCCTCTGGGTTGGTGAGCTGCCAACATTCAAATCTAAAACATATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGGGTTGGTGAGCTGCCAACATTCAAATCTAAAACATATGC  50

seq1  TTCCCCTACAACACACTGCTAGGAACAGGTGGGGCATGAGTCTCTACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTACAACACACTGCTAGGAACAGGTGGGGCATGAGTCTCTACAAT  100

seq1  GTACTAATAGATGATCCAGTACGGACTGCCAAGACATAGACAACTGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATAGATGATCCAGTACGGACTGCCAAGACATAGACAACTGTGTT  150

seq1  CAGTGCCTGTTTGCAATGAACATTTGTTGCAGCCATCAGGAATATGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTGTTTGCAATGAACATTTGTTGCAGCCATCAGGAATATGGAGA  200

seq1  TATATCACAAAAAGAATGACACATGTTTAAATGAAAATTAGCCTACTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACAAAAAGAATGACACATGTTTAAATGAAAATTAGCCTACTTTG  250

seq1  TTTTGTTTTGAGATGAATCTCACTCTGTAGCCCAAGCAAAAGTTGAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGAGATGAATCTCACTCTGTAGCCCAAGCAAAAGTTGAACTC  300

seq1  AAGTTAATACTCCTGCCTCAGTTTCTGAGTACTGGGATTGCAGGTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATACTCCTGCCTCAGTTTCTGAGTACTGGGATTGCAGGTGTGAG  350

seq1  CTAACACACCTGGCTCATACTTTTCATTTATGGACTAAAATCAGATTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACACCTGGCTCATACTTTTCATTTATGGACTAAAATCAGATTCCA  400

seq1  GCTTCATCTGTAGGAAAGCTATTTGGTGACATCAAGCGTTCAGTTACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATCTGTAGGAAAGCTATTTGGTGACATCAAGCGTTCAGTTACCAA  450

seq1  AATGAACAGAGTTGTGGTTGCATTGAATGGTAACTGACTTAAGTCTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAGAGTTGTGGTTGCATTGAATGGTAACTGACTTAAGTCTAGTC  500

seq1  TATCAATAATGGAACTTATTAGAATAAATTGGCTCTCTTCAGTAATCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATAATGGAACTTATTAGAATAAATTGGCTCTCTTCAGTAATCAGG  550

seq1  CATGCTCTATTCACTAACTGCTCAGTCTCATCCTCTACTGTGAGGTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTATTCACTAACTGCTCAGTCTCATCCTCTACTGTGAGGTAAAC  600

seq1  TCGGTGTAACAGCCTCATTTTTCACTAGAGCGCCTTGGTCTTTCTCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTAACAGCCTCATTTTTCACTAGAGCGCCTTGGTCTTTCTCCTTA  650

seq1  CTGAGGTATCAGGAGGTGAGACTGAGCTGAGTAAGATGGCAGATGCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTATCAGGAGGTGAGACTGAGCTGAGTAAGATGGCAGATGCTGAC  700

seq1  TCGAGACCCCTGCCATGCTTCTAAGTGAAATGGGTATTACTCTGGGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACCCCTGCCATGCTTCTAAGTGAAATGGGTATTACTCTGGGTGAT  750

seq1  TGCAGAATTTCTAGAGAAGCTGAGGCTCAGCACCAAAAGCCATCCCTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATTTCTAGAGAAGCTGAGGCTCAGCACCAAAAGCCATCCCTTAC  800

seq1  CAATGAAAGAGGGCT-GGAAGAGAGTCTCTGGACAGCGGAAGCGCTCGTT  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAATGAAAGAGGGCTGGGAAGAGAGTCTCTGGACAGCGGAAGCGCTCGTT  850

seq1  GCCAATGGTGATGACCTGGCCGTCAGGAAGTTCATAGCTCTTCTCCAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGGTGATGACCTGGCCGTCAGGAAGTTCATAGCTCTTCTCCAGAG  900

seq1  AGGAGGAAGATGCAGCTGTGGCCATCTCGTTCTCAAAATCCAGGGCGACG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGATGCAGCTGTGGCCATCTCGTTCTCAAAATCCAGGGCGACG  950

seq1  TAACACAGTTTTTCTTTTATGTCAC-GGACAATTT-CACGTTCAGCTGCA  997
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TAACACAGTTTTTCTTTTATGTCACGGGACAATTTCCACGTTCAGCTGCA  1000

seq1  GAG-ACAGAGGGC-TTCATAGTCAAGC-TCTGAAG-AAAGGATCAAATAT  1043
      ||| ||||||||| ||||||||||||| ||||| | ||||||||||||||
seq2  GAGTACAGAGGGCTTTCATAGTCAAGCTTCTGAGGAAAAGGATCAAATAT  1050

seq1  GGGGAAGTAGGTCTATCTACCAATGAAGCAAAAGCAACAGGCATATG--C  1091
      |||||||   |||||||||| |||| ||| ||||| ||| |||||||   
seq2  GGGGAAGGTAGTCTATCTACTAATG-AGC-AAAGCTACAAGCATATGTCT  1098

seq1  TGTGTC  1097
      ||||||
seq2  TGTGTC  1104