BAC Information

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BAC

Clone NameB6Ng01-221G07
Chromosome2 (Build37)
Map Location 120,101,087 - 120,227,390
singlet/doubletdoublet
Overlap genePla2g4d, Pla2g4f, Vps39, Tmem87a
Upstream geneVps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635
Downstream geneGanc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221G07.bB6Ng01-221G07.g
ACCGA036700GA036701
length538740
definitionB6Ng01-221G07.b B6Ng01-221G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,226,852 - 120,227,390)(120,101,087 - 120,101,823)
sequence
gaattcctctgtacaccaggctagcctggaactcaccgagatccatctat
ctttgcccctgcaagtgctgggattaaaggtggtgcaccaccacggtcta
ccaggcttctctggtttttgaaataggttcttactatgtagcccaaggcc
agccttaggttcagtttctcaagtgctatgattattaaacatgaactact
aaatcttggttcatgtgttttgttttgttttgagcatgcctttaccttga
aaatgcaattaaattgggtgattgtattctttagtttaataagtgggtgt
aaaataacttttgtgtgctgagaacttataggtaccagaaaagtggtata
aaaactctcttctgtcactgggcttccactccagtgggagtgaaaagagc
aggtaaaattcctgtgaagaatatactcgtgatccttagttttaattgtc
aacagcacaactcagagtaacttgggaaaagaatctcaatgaggggttgt
ctagatctggttggtcattgggtgtgtgtgtgggattg
gaattccttcatcagggttttagccacatgctccctagcatgactgatgg
gtccttccaggtccctctgtgaccactctgggtccctgtacaggtgggcc
attgtcctgggggaacaaaaggatgaaatctgaatcccaatcctgccctg
agtctaatccttaaagagggattgttgaggtccttgatgccgagatagtc
cgtctggagacggatcctgggacttccttctagtcctggtctacgtctgg
tatatgtatacacacccacacacatatatatacacacacacacatatata
catacatacacatatacatatatgcatgtatagatacacgcttatatgtg
tgtatgtatgtatgcatgtatatagttatgatttagattttattcacagg
gctgaggctcaacctacagtctcttacaatctcttgcaggtgcttcagtg
atgatgcatttccgacccatatattatttatagtatctccctagccacat
tgagaaatgtgcaggaaaacagcatagaagctgtaataacttatgttgtt
gaattcacaatatgcagctcaccaacagtgtggcctataaaggacatttt
cccatcttctctcctctgaaggagtattcattctgccctacaaatccctt
ctcctcagaactgccctgttgatgctgtccacctcatgtcacatgccaag
agaacagctctccctcagaggaactccacacatgaaaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120226852_120227390
seq2: B6Ng01-221G07.b_38_575 (reverse)

seq1  CAATCCCACACACACACCCACTGACCAACCAGATCTAGACAACCCCTCAT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAATCCCACACACACACCCAATGACCAACCAGATCTAGACAACCCCTCAT  50

seq1  TGAGATTCTTTTCCCAAGTTACTCTGAGTTGTGCTGTTGACAATTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCTTTTCCCAAGTTACTCTGAGTTGTGCTGTTGACAATTAAAAC  100

seq1  TAAGGATCACGAGTATATTCTTCACAGGAATTTTACCTGCTCCTTTCACT  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAGGATCACGAGTATATTCTTCACAGGAATTTTACCTGCTCTTTTCACT  150

seq1  CCCACTGGAGTGGAAGCCCAGTGACAGAAGAGAGTTTTTCTACCACTTCT  200
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  CCCACTGGAGTGGAAGCCCAGTGACAGAAGAGAGTTTTTATACCACTTTT  200

seq1  CTGGTACCTATAAGTACTCAGCACACAAAAGTTATTTTACAACCACTTAT  250
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  CTGGTACCTATAAGTTCTCAGCACACAAAAGTTATTTTACACCCACTTAT  250

seq1  TAAACTAAAGAATACAATCACCCAATTTAATTGCATTTTCAAGGTAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAAAGAATACAATCACCCAATTTAATTGCATTTTCAAGGTAAAGG  300

seq1  CATGCTCAAAACAAAACAAAACACATGAACCAAGATTTAGTAGTTCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCAAAACAAAACAAAACACATGAACCAAGATTTAGTAGTTCATGT  350

seq1  CTAATAATCCTAGCACTTGAGAAACTGAACCTAAGGCTGGCCTTGGGCTA  400
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATCATAGCACTTGAGAAACTGAACCTAAGGCTGGCCTTGGGCTA  400

seq1  CATAGTAAGAACCTATTTCAAAAACCAGAGAAGCCTGGTAGACCGTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAAGAACCTATTTCAAAAACCAGAGAAGCCTGGTAGACCGTGGTG  450

seq1  GTGCACCACCTTTAATCCCAGCACTTGCAGGGGCAAAGATAGATGGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCACCTTTAATCCCAGCACTTGCAGGGGCAAAGATAGATGGATCT  500

seq1  CGGTGAGTTCCAGGCTAGCCTGGTGTACAGAGTGAATTC  539
      |||||||||||||||||||||||||||||||| ||||||
seq2  CGGTGAGTTCCAGGCTAGCCTGGTGTACAGAG-GAATTC  538

seq1: chr2_120101087_120101823
seq2: B6Ng01-221G07.g_64_803

seq1  GAATTCCTTCAGCAGGGTTTTAGCCACATGCTCCCTAGCATGACTGATGG  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATCAGGGTTTTAGCCACATGCTCCCTAGCATGACTGATGG  50

seq1  GTCCTTCGAGGTCCCTCTGTGACCACTCTGGGTCCCTGTACAGGTGGGCC  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCAGGTCCCTCTGTGACCACTCTGGGTCCCTGTACAGGTGGGCC  100

seq1  ATTGTCCTGGGGGAACAAGAGGATGAACGCTGAATCCCAATCCTGCCCTG  150
      |||||||||||||||||| ||||||||  |||||||||||||||||||||
seq2  ATTGTCCTGGGGGAACAAAAGGATGAAATCTGAATCCCAATCCTGCCCTG  150

seq1  TGTCTAATCCTTAAAGAGGGATTGTTGAGGTCCTTGATGCCAAGATAGTC  200
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTCTAATCCTTAAAGAGGGATTGTTGAGGTCCTTGATGCCGAGATAGTC  200

seq1  CGTCTGGAGACGGATCCTGGGACTTCCTTCTAGTCCTGGTCTAGGTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CGTCTGGAGACGGATCCTGGGACTTCCTTCTAGTCCTGGTCTACGTCTGG  250

seq1  TATATATATACACACACACACACATATATATACACACACACACATATATA  300
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATATGTATACACACCCACACACATATATATACACACACACACATATATA  300

seq1  CATACATACACATATACATATATACATGTATATATACACACATATATGTG  350
      ||||||||||||||||||||||| |||||||| |||||| | ||||||||
seq2  CATACATACACATATACATATATGCATGTATAGATACACGCTTATATGTG  350

seq1  TGTATGTATGTATGCATGTATATAGTTATGATTTAGATTTTATTCACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTATGTATGTATGCATGTATATAGTTATGATTTAGATTTTATTCACAGG  400

seq1  GCTGAGGCTCAACCTACAGTCTCTTACAGTCTCTTGCAGGTGCTTCAGTG  450
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTGAGGCTCAACCTACAGTCTCTTACAATCTCTTGCAGGTGCTTCAGTG  450

seq1  ATGAGGTATTTCCGACCCATATATAATTTAGAGTTTCTCAGTAGCCACAT  500
      |||| | ||||||||||||||||| ||||| ||| ||||  |||||||||
seq2  ATGATGCATTTCCGACCCATATATTATTTATAGTATCTCCCTAGCCACAT  500

seq1  TAGGAAATGAGCAGGAAAACAGTAAAGAAGCTTTAATAACTTATGTTGTT  550
      |  |||||| |||||||||||| | ||||||| |||||||||||||||||
seq2  TGAGAAATGTGCAGGAAAACAGCATAGAAGCTGTAATAACTTATGTTGTT  550

seq1  GAATTCAGTAACAGCAGC-AGCCAACAGTG-GGCCTATAAAGGACATTTT  598
      |||||||  |   |||||   ||||||||| |||||||||||||||||||
seq2  GAATTCACAATATGCAGCTCACCAACAGTGTGGCCTATAAAGGACATTTT  600

seq1  CCCATCTTCTCTCCTCTGAGGGAGTACCCACTCTGCCCCACAGACCCCTT  648
      ||||||||||||||||||| ||||||  || ||||||| ||| | |||||
seq2  CCCATCTTCTCTCCTCTGAAGGAGTATTCATTCTGCCCTACAAATCCCTT  650

seq1  CTCCTCAGAGCTGCCCCCATGCTGCTGTCTACGTCATGTCTCACTCCAAG  698
      ||||||||| ||||||   || ||||||| || ||||||| ||  |||||
seq2  CTCCTCAGAACTGCCCTGTTGATGCTGTCCACCTCATGTCACATGCCAAG  700

seq1  AGAAC-GGTCCCCCTCAGAGGAACTCCAAACCTGAAAACG  737
      ||||| | || ||||||||||||||||| || ||||||||
seq2  AGAACAGCTCTCCCTCAGAGGAACTCCACACATGAAAACG  740