BAC Information

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BAC

Clone NameB6Ng01-221K11
Chromosome2 (Build37)
Map Location 144,134,840 - 144,286,773
singlet/doubletdoublet
Overlap geneOvol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik
Downstream gene6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221K11.bB6Ng01-221K11.g
ACCGA036886GA036887
length1,0341,043
definitionB6Ng01-221K11.b B6Ng01-221K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,134,840 - 144,135,869)(144,285,738 - 144,286,773)
sequence
gaattctgtatttcacaacaaaaaaggattttaaaaaatggtccctagga
ggctggctgagccatccctcactgcctgctcttttgaattttttcttttc
ttttttaagatttattttatttattgtatgtaaatacactgtagctgtct
tcagacaccagaagaggggatcgggtcttgttacagatggctgtgagcct
ccttgtggttgctgggatttgaactcaggatctctagaagaacagtcact
gctcttagccgctgagccatctctccagtccccattttgaattttctatc
cgacacctttattacctagttcattcatatatacatacatgcatgcgtac
atacatatacacacacatatacatacattcatatatacatgtgtatatag
attatatacatacacacatatatatgttcttctggggtgttgtcaacaaa
gacttttgagtttttcattctttttgtgtgtgtgtgtttgtttattccca
acactaagctgaatttcaaatcccacatctccaggtaaagtccccacttc
tggaactttctgattgctttccttcctctgggtcaaatgttcctttcctg
attttgagccaactgtgaactccaacaagaagctctgacactggcctcct
ggtgggagaagacactgagggccgcctctaggaaggcaaagaggcaatgc
ctgtgaaacccagagtgctcctgccctttggcctagtaagtttcacctgt
gggaggttacatcagagatagacttgcatgggtgggcaaaggatatgcaa
gaaaattcatggtggtcagaattaaataaaacagaaaacaacctgaaaat
ggaagcaaagacttcttgggaactaggaaaggactgtgcctctgtgatgg
gatttgtcatggtttcgtattacatggacaatgaggaaaaggagttgagg
ttccacaatgcagacaccaagcaagccatgggtctctttccaggagagca
gcccatgtgccttcgaagcttccaggacaaaaaa
gaattccaggtacttctctcacctgcctttaatcacagatgttatggctg
gagagaaaagcagcgaaaagcagatttctttaaacaactgaggaggagtc
catatggattaaatattaaaacatattaacaagttactcatgttgctggg
tgtaacgacgaaattgtacacattaaagttgtgtgtcttttaaaataaaa
ttgtgtgtgtgtgatgtctactgaagttatgtgccaggaaagtaactgaa
aattccttaaaactattccagcaggacaaactgtaaatgaggatggacag
aggctggctcctgatgacccctgggactgagcaggataaatgagggctga
ggtagaacacaggaaattagtggaggtatagcctgcctgaatagaccctg
caaaaactgtcctagaggaaccagctagggctctgacctgcatcgggaca
ccatgaaatacaagatgtccaaagagagcaaaggaaacatattcctggtt
cagggcgtaaaagggaagggcacctgaaactgggctgtcaggagcccaaa
ggtgctgggagatgtaagatggtccactctgccagtagtgatgagagtca
atacttcctggactcttagaacattctagagactgttcctggcaggcacg
ttttattctactcttccaacaactcaaagtagatactactgtcattttac
acatgagactagagacacaatgagatcaggtccctgctgaggtgacaaaa
ctatgaagtgacagcttgggaaaacatggctgtgaagaccagagtccttt
ggggttgtaaggactcccagtgtgtccgctttagatgaatcatgattagt
cacatggcgacaaacttgaatctgggtgttagatctttggattttcctat
cttctggctgtttggaacttctccaaaataagacattaaaattccattaa
atccctagtacttcttgtagttaccttaagtcttttggaatgccttggaa
aacccttgaaccatggggagggtgtggaacacattcttttact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144134840_144135869
seq2: B6Ng01-221K11.b_46_1079

seq1  GAATTCTGTATTTCACAACAAAAAAGGATTTTAAAAAATGGTCCCTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATTTCACAACAAAAAAGGATTTTAAAAAATGGTCCCTAGGA  50

seq1  GGCTGGCTGAGCCATCCCTCACTGCCTGCTCTTTTGAATTTTTTCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTGAGCCATCCCTCACTGCCTGCTCTTTTGAATTTTTTCTTTTC  100

seq1  TTTTTTAAGATTTATTTTATTTATTGTATGTAAATACACTGTAGCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGATTTATTTTATTTATTGTATGTAAATACACTGTAGCTGTCT  150

seq1  TCAGACACCAGAAGAGGGGATCGGGTCTTGTTACAGATGGCTGTGAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACCAGAAGAGGGGATCGGGTCTTGTTACAGATGGCTGTGAGCCT  200

seq1  CCTTGTGGTTGCTGGGATTTGAACTCAGGATCTCTAGAAGAACAGTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGTTGCTGGGATTTGAACTCAGGATCTCTAGAAGAACAGTCACT  250

seq1  GCTCTTAGCCGCTGAGCCATCTCTCCAGTCCCCATTTTGAATTTTCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAGCCGCTGAGCCATCTCTCCAGTCCCCATTTTGAATTTTCTATC  300

seq1  CGACACCTTTATTACCTAGTTCATTCATATATACATACATGCATGCGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACCTTTATTACCTAGTTCATTCATATATACATACATGCATGCGTAC  350

seq1  ATACATATACACACACATATACATACATTCATATATACATGTGTATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACACACACATATACATACATTCATATATACATGTGTATATAG  400

seq1  ATTATATACATACACACATATATATGTTCTTCTGGGGTGTTGTCAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATACATACACACATATATATGTTCTTCTGGGGTGTTGTCAACAAA  450

seq1  GACTTTTGAGTTTTTCATTCTTTTTGTGTGTGTGTGTTTGTTTATTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGAGTTTTTCATTCTTTTTGTGTGTGTGTGTTTGTTTATTCCCA  500

seq1  ACACTAAGCTGAATTTCAAATCCCACATCTCCAGGTAAAGTCCCCACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGCTGAATTTCAAATCCCACATCTCCAGGTAAAGTCCCCACTTC  550

seq1  TGGAACTTTCTGATTGCTTTCCTTCCTCTGGGTCAAATGTTCCTTTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTTCTGATTGCTTTCCTTCCTCTGGGTCAAATGTTCCTTTCCTG  600

seq1  ATTTTGAGCCAACTGTGAACTCCAACAAGAAGCTCTGACACTGGCCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGCCAACTGTGAACTCCAACAAGAAGCTCTGACACTGGCCTCCT  650

seq1  GGTGGGAGAAGACACTGAGGGCCGCCTCTAGGAAGGCAAAGAGGCAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGAAGACACTGAGGGCCGCCTCTAGGAAGGCAAAGAGGCAATGC  700

seq1  CTGTGAAACCCAGAGTGCTCCTGCCCTTTGGCCTAGTAAG-TTCACCTGT  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGTGAAACCCAGAGTGCTCCTGCCCTTTGGCCTAGTAAGTTTCACCTGT  750

seq1  GGGAGGTTACATCAGAGATAGACTTGCATGGGTGGGCAAAGGATATGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTTACATCAGAGATAGACTTGCATGGGTGGGCAAAGGATATGCAA  800

seq1  GAAAATTCATGGTGGTCAGAATTAAATAAAACAGAAAACAACCTGAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCATGGTGGTCAGAATTAAATAAAACAGAAAACAACCTGAAAAT  850

seq1  GGAAGCAAAGACTTC-TGGGAACTAGGAAAGGACTGTGCCTCTGTGATGG  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAAGACTTCTTGGGAACTAGGAAAGGACTGTGCCTCTGTGATGG  900

seq1  GATTTGTCATGGTTTCGTATTACATGGACAATGAGGAAAAGGAG-TGAGG  947
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATTTGTCATGGTTTCGTATTACATGGACAATGAGGAAAAGGAGTTGAGG  950

seq1  TTCCACAATGCAGACACCAAGCAAGCCA-GGGTCTCCTTCCCAGGAGAGC  996
      |||||||||||||||||||||||||||| |||||| ||| ||||||||||
seq2  TTCCACAATGCAGACACCAAGCAAGCCATGGGTCT-CTTTCCAGGAGAGC  999

seq1  AG-CCATGTGCCTTCGAAGCTTCCAGGACAAAAAA  1030
      || ||||||||||||||||||||||||||||||||
seq2  AGCCCATGTGCCTTCGAAGCTTCCAGGACAAAAAA  1034

seq1: chr2_144285738_144286773
seq2: B6Ng01-221K11.g_67_1109 (reverse)

seq1  AGTAAAAG-ATGTGTGCCACCACCT-CCCAT-GCTCAAGG--TTTTCAAA  45
      |||||||| |||||| ||||  ||| ||||| | ||||||  ||| ||| 
seq2  AGTAAAAGAATGTGTTCCACACCCTCCCCATGGTTCAAGGGTTTTCCAAG  50

seq1  GCAT--CCAAAGACTT-AGGTGACTACAAGAAGT-CTAGGATTTTAAATG  91
      ||||  | |||||||| |||| |||||||||||| |||||  ||| ||||
seq2  GCATTCCAAAAGACTTAAGGTAACTACAAGAAGTACTAGGGATTT-AATG  99

seq1  GAATTTTAATGTCTTATTTTGGAGAAGTTCCAAACAGCCAGAAAGATAGG  141
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTTTAATGTCTTATTTTGGAGAAGTTCCAAACAGCCAG-AAGATAGG  148

seq1  AAAATCCAAAGATCTACCACCCAGATTCAAGTTTGTCGCCATGTGACTAA  191
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAATCCAAAGATCTAACACCCAGATTCAAGTTTGTCGCCATGTGACTAA  198

seq1  TCATGATTCATCTTAAAGCGGACACACTGGGAGTCCTTACAACCCC-AAG  240
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  TCATGATTCATC-TAAAGCGGACACACTGGGAGTCCTTACAACCCCAAAG  247

seq1  GACTCTGGTCTTCACAGCCATGTTTTCCCAAGCTGTCACTTCATAGTTTT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGTCTTCACAGCCATGTTTTCCCAAGCTGTCACTTCATAGTTTT  297

seq1  GTCACCTCAGCAGGGACCTGATCTCATTGTGTCTCTAGTCTCATGTGTAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCAGCAGGGACCTGATCTCATTGTGTCTCTAGTCTCATGTGTAA  347

seq1  AATGACAGTAGTATCTACTTTGAGTTGTTGGAAGAGTAGAATAAAACGTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGTAGTATCTACTTTGAGTTGTTGGAAGAGTAGAATAAAACGTG  397

seq1  CCTGCCAGGAACAGTCTCTAGAATGTTCTAAGAGTCCAGGAAGTATTGAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGGAACAGTCTCTAGAATGTTCTAAGAGTCCAGGAAGTATTGAC  447

seq1  TCTCATCACTACTGGCAGAGTGGACCATCTTACATCTCCCAGCACCTTTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCACTACTGGCAGAGTGGACCATCTTACATCTCCCAGCACCTTTG  497

seq1  GGCTCCTGACAGCCCAGTTTCAGGTGCCCTTCCCTTTTACGCCCTGAACC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGACAGCCCAGTTTCAGGTGCCCTTCCCTTTTACGCCCTGAACC  547

seq1  AGGAATATGTTTCCTTTGCTCTCTTTGGACATCTTGTATTTCATGGTGTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATGTTTCCTTTGCTCTCTTTGGACATCTTGTATTTCATGGTGTC  597

seq1  CCGATGCAGGTCAGAGCCCTAGCTGGTTCCTCTAGGACAGTTTTTGCAGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGCAGGTCAGAGCCCTAGCTGGTTCCTCTAGGACAGTTTTTGCAGG  647

seq1  GTCTATTCAGGCAGGCTATACCTCCACTAATTTCCTGTGTTCTACCTCAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTCAGGCAGGCTATACCTCCACTAATTTCCTGTGTTCTACCTCAG  697

seq1  CCCTCATTTATCCTGCTCAGTCCCAGGGGTCATCAGGAGCCAGCCTCTGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATTTATCCTGCTCAGTCCCAGGGGTCATCAGGAGCCAGCCTCTGT  747

seq1  CCATCCTCATTTACAGTTTGTCCTGCTGGAATAGTTTTAAGGAATTTTCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCATTTACAGTTTGTCCTGCTGGAATAGTTTTAAGGAATTTTCA  797

seq1  GTTACTTTCCTGGCACATAACTTCAGTAGACATCACACACACACAATTTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTCCTGGCACATAACTTCAGTAGACATCACACACACACAATTTT  847

seq1  ATTTTAAAAGACACACAACTTTAATGTGTACAATTTCGTCGTTACACCCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGACACACAACTTTAATGTGTACAATTTCGTCGTTACACCCA  897

seq1  GCAACATGAGTAACTTGTTAATATGTTTTAATATTTAATCCATATGGACT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATGAGTAACTTGTTAATATGTTTTAATATTTAATCCATATGGACT  947

seq1  CCTCCTCAGTTGTTTAAAGAAATCTGCTTTTCGCTGCTTTTCTCTCCAGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAGTTGTTTAAAGAAATCTGCTTTTCGCTGCTTTTCTCTCCAGC  997

seq1  CATAACATCTGTGATTAAAGGCAGGTGAGAGAAGTACCTGGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATCTGTGATTAAAGGCAGGTGAGAGAAGTACCTGGAATTC  1043