BAC Information

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BAC

Clone NameB6Ng01-221M14
Chromosome2 (Build37)
Map Location 114,221,011 - 114,373,933
singlet/doubletdoublet
Overlap geneAtpbd4
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneLOC100043219, LOC100043222, LOC100043232
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221M14.bB6Ng01-221M14.g
ACCGA036980GA036981
length1,1561,102
definitionB6Ng01-221M14.b B6Ng01-221M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,221,011 - 114,222,135)(114,372,829 - 114,373,933)
sequence
gaattctgcagaaatgcttacaatactaaagaactgctattactacatat
atctatcaatagacagcagacaaattatcatacctccaccaacagaaaca
gcatgcaaccactaaagagaactaaaggttcatgtgtattgacatagaga
agtgtccacggtattttattaagtcagcagaaatgatataaaatttatga
gttctttttgtgaacataaaaatttggaagcattcattttataagccagc
acaataaatgtgataaaaataaaagtgaggacagagtaaagacattttaa
tacaaaacatttaaagagaaaaagaaattaacattgtgccaaacaaacca
tcaagactcaccagatttgtggatgccccagtgctccaagaacctctgcc
ccatgagcagaataagaaatgggggagagcaggatctgacacagggctca
tctctgggtttgacactggtctgacccagtgctctgcatgtgtctggctg
tccaatcacttaccattctctcggcctcacctctgttcttttttctcatg
cattgcccttactcctttgtctatccttgtgcaggatactcccactgccc
ttagtgtcctgaatctctgtgttgctggcttcttcttgtcaatcaagtgt
cataccgaacatccttcagatgaactctctgctttctccacctcaagttt
atttttagttttgttttcttcatggtgtgtattgttttttctaaaaggtg
tcttgctcatgtttgcccttttgttactgtgtacaatcttcccctgacaa
aaaagcactcaatgtttcatacttaaaatttttagatttattttattttc
atgttttattgagtgtgttgtcttgcattttatgtatgtaacaccaagtt
ttgacctctggttaccatataaatagccctggttctgggagtttataagc
aatttgtgatccaccatgtggctactgagaatttgaactggtgttttgca
gaagcaccaactgctcttaaccatttagctatcttcttcagccccttatc
gctgttaccacagtatggagtgattttcaaaatttttgcctactttgtct
tttattgagtggaatggaaagaaatgctaatggctcaggtatcagctata
tgacta
gaattctgtgtccaacaaagaaaacaaaggagcaccctgctgctaactgc
atgtgggtttatgttgtcctaggttttccccatagaaacccctttgtttt
tttggttttttttttaacaatttttttgttagatattttcttcatctaca
attcaaatgctatccccaaaatcccttataccctctccccaccctgcact
ccaacccacccactcctgcttcctggccctagcattcccctgtattggcg
catgtaatctttgcaagaccaagggcctctcctcccaatgattgccaatt
tggccatcttctgctacatatacagctagagacatgagctcagggggtac
tggctgttcctcctatagggttacagaccccttcagctcctacccctttg
ttttttataaaatagctcttagttttcagaagcctttgccttccagtgta
agctttctggcattgttgactaaacaggctttctgttgggatttcatgct
ttatttcatcttcagcttggcttctgctctgcatcagtcttggaacaatt
ctagagttgaggttttgtttattgatttattggactcaaacttatatagt
catcttactatttatctgaataataaaaggtatttgatatacttttcctc
tttcttgacttttttattaatcggcttccgtttttatatttgttaattag
ctagttaaatgttactttgcttcagtcttgcctagtggttactgtacatg
aaccctgtttccttcctggacgtgttgtattaccttgcattctaatctac
acctgtatctatcttttctatgtattatttttgtttatataccatttatg
tatattacctcctttctccctcacactgtactttattctctttaatgtac
ttggtttactctgggataacttactcctgcctcaataactcaccttaata
ttcttcaatttagctttgctggtgataaatcctttactctgtctgactaa
ttttcttcactgaaatccattttcattgatactatggaagaacacagcat
tttaccatcatgtcactatattttaactaacacaagcctgaaatattttg
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_114221011_114222135
seq2: B6Ng01-221M14.b_45_1200

seq1  GAATTCTGCAGAAATGCTTACAATACTAAAGAACTGCTATTACTACATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGAAATGCTTACAATACTAAAGAACTGCTATTACTACATAT  50

seq1  ATCTATCAATAGACAGCAGACAAATTATCATACCTCCACCAACAGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCAATAGACAGCAGACAAATTATCATACCTCCACCAACAGAAACA  100

seq1  GCATGCAACCACTAAAGAGAACTAAAGGTTCATGTGTATTGACATAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAACCACTAAAGAGAACTAAAGGTTCATGTGTATTGACATAGAGA  150

seq1  AGTGTCCACGGTATTTTATTAAGTCAGCAGAAATGATATAAAATTTATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCACGGTATTTTATTAAGTCAGCAGAAATGATATAAAATTTATGA  200

seq1  GTTCTTTTTGTGAACATAAAAATTTGGAAGCATTCATTTTATAAGCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTTGTGAACATAAAAATTTGGAAGCATTCATTTTATAAGCCAGC  250

seq1  ACAATAAATGTGATAAAAATAAAAGTGAGGACAGAGTAAAGACATTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAATGTGATAAAAATAAAAGTGAGGACAGAGTAAAGACATTTTAA  300

seq1  TACAAAACATTTAAAGAGAAAAAGAAATTAACATTGTGCCAAACAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACATTTAAAGAGAAAAAGAAATTAACATTGTGCCAAACAAACCA  350

seq1  TCAAGACTCACCAGATTTGTGGATGCCCCAGTGCTCCAAGAACCTCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTCACCAGATTTGTGGATGCCCCAGTGCTCCAAGAACCTCTGCC  400

seq1  CCATGAGCAGAATAAGAAATGGGGGAGAGCAGGATCTGACACAGGGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGCAGAATAAGAAATGGGGGAGAGCAGGATCTGACACAGGGCTCA  450

seq1  TCTCTGGGTTTGACACTGGTCTGACCCAGTGCTCTGCATGTGTCTGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGTTTGACACTGGTCTGACCCAGTGCTCTGCATGTGTCTGGCTG  500

seq1  TCCAATCACTTACCATTCTCTCGGCCTCACCTCTGTTCTTTTTTCTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCACTTACCATTCTCTCGGCCTCACCTCTGTTCTTTTTTCTCATG  550

seq1  CATTGCCCTTACTCCTTTGTCTATCCTTGTGCAGGATACTCCCACTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCCTTACTCCTTTGTCTATCCTTGTGCAGGATACTCCCACTGCCC  600

seq1  TTAGTGTCCTGAATCTCTGTGTTGCTGGCTTCTTCTTGTCAATCAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTCCTGAATCTCTGTGTTGCTGGCTTCTTCTTGTCAATCAAGTGT  650

seq1  CATACCGAACATCCTTCAGATGAACTCTCTGCTTTCTCCACCTCAAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCGAACATCCTTCAGATGAACTCTCTGCTTTCTCCACCTCAAGTTT  700

seq1  ATTTTTAGTTTTGTTTTCTTCATGGTGTGTATTG-TTTTTCT-AAAGGTG  748
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  ATTTTTAGTTTTGTTTTCTTCATGGTGTGTATTGTTTTTTCTAAAAGGTG  750

seq1  TCTTGCTCATGTTTGCCCTTTTGTTACTGTGTACAATCTTCCCCTGAC-A  797
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTGCTCATGTTTGCCCTTTTGTTACTGTGTACAATCTTCCCCTGACAA  800

seq1  AAAAGCACTCAATGTTTCATACTTAAAATTTTTAGATTTATTT--ATTTC  845
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  AAAAGCACTCAATGTTTCATACTTAAAATTTTTAGATTTATTTTATTTTC  850

seq1  ATGTTT--ATGAGTGTGTTGTC-TGCA-TTTATGTATGT-ACACCAAG-T  889
      ||||||   ||||||||||||| |||| ||||||||||| |||||||| |
seq2  ATGTTTTATTGAGTGTGTTGTCTTGCATTTTATGTATGTAACACCAAGTT  900

seq1  TTGA-CTCTGGTTACCATAT-AATAGCCCTGGTTCT-GGAG-TTATAAGC  935
      |||| ||||||||||||||| ||||||||||||||| |||| ||||||||
seq2  TTGACCTCTGGTTACCATATAAATAGCCCTGGTTCTGGGAGTTTATAAGC  950

seq1  AA-TTGTGATCCACCATGTGGCTACTGAGAA-TTGAACTGGGTGTTTTGC  983
      || |||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  AATTTGTGATCCACCATGTGGCTACTGAGAATTTGAACT-GGTGTTTTGC  999

seq1  AAGAGCAACAACTGCTCTTAACCATTTAGCTATC-TCTTCAGCCCC-TAT  1031
      |  |||| |||||||||||||||||||||||||| ||||||||||| |||
seq2  AGAAGCACCAACTGCTCTTAACCATTTAGCTATCTTCTTCAGCCCCTTAT  1049

seq1  CGCTG-TACCACAG-AT-GAGTGA-TTTCAAAATTTTTG-CTACTTTGTC  1076
      ||||| |||||||| || |||||| |||||||||||||| ||||||||||
seq2  CGCTGTTACCACAGTATGGAGTGATTTTCAAAATTTTTGCCTACTTTGTC  1099

seq1  -TTTATTGAGT-GAAT-GAAAGAA--GC-AATGGC-CAGG-AACAGCCAT  1118
       |||||||||| |||| |||||||  || |||||| |||| | |||| ||
seq2  TTTTATTGAGTGGAATGGAAAGAAATGCTAATGGCTCAGGTATCAGCTAT  1149

seq1  ATGACTA  1125
      |||||||
seq2  ATGACTA  1156

seq1: chr2_114372829_114373933
seq2: B6Ng01-221M14.g_67_1168 (reverse)

seq1  GTCAAAATATTTCAAGGCTTGTGTTAGGTAAAATATAGTGACAATGATGA  50
      ||||||||||||| ||||||||||||| |||||||||||||| |||||| 
seq2  GTCAAAATATTTC-AGGCTTGTGTTAGTTAAAATATAGTGAC-ATGATGG  48

seq1  T-AAATGCTGTGTTC-TCCATAGTATC-ATGAAAATGGATTTCAAGTGAA  97
      | ||||||||||||| ||||||||||| ||||||||||||||| ||||||
seq2  TAAAATGCTGTGTTCTTCCATAGTATCAATGAAAATGGATTTC-AGTGAA  97

seq1  AGAAAAATTAGTCAGACAGAGTAAAAGGATTTATCACCAGCAAAGCTAAA  147
         ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  --GAAAATTAGTCAGACAGAGT-AAAGGATTTATCACCAGCAAAGCTAAA  144

seq1  TTGAAGAATATTAAGGTGAGTTATTGAGGCAGGAGTAAGTTATCCCAGAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAATATTAAGGTGAGTTATTGAGGCAGGAGTAAGTTATCCCAGAG  194

seq1  TTAAACAAGTACATTAAAAGAGAATAAAGTACAGTGTGAGGGAGAAAGGA  247
      | || |||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAACCAAGTACATT-AAAGAGAATAAAGTACAGTGTGAGGGAGAAAGGA  243

seq1  GGTAATATACATAAATGGTATATAAAC-AAAATAATACATTAGAAAGATA  296
      ||||||||||||||||||||||||||| ||||||||||||   |||||||
seq2  GGTAATATACATAAATGGTATATAAACAAAAATAATACATAGAAAAGATA  293

seq1  GATACAGGTGTAGATTAGAATGCAAGGTAATACAACACGTCCAGGAAGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGGTGTAGATTAGAATGCAAGGTAATACAACACGTCCAGGAAGGA  343

seq1  AACAGGGTTCATGTACAGTAACCACTAGGCAAGACTGAAGCAAAGTAACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTTCATGTACAGTAACCACTAGGCAAGACTGAAGCAAAGTAACA  393

seq1  TTTAACTAGCTAATTAACAAATATAAAAACGGAAGCCGATTAATAAAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTAGCTAATTAACAAATATAAAAACGGAAGCCGATTAATAAAAAA  443

seq1  GTCAAGAAAGAGGAAAAGTATATCAAATACCTTTTATTATTCAGATAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAAAGAGGAAAAGTATATCAAATACCTTTTATTATTCAGATAAAT  493

seq1  AGTAAGATGACTATATAAGTTTGAGTCCAATAAATCAATAAACAAAACCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATGACTATATAAGTTTGAGTCCAATAAATCAATAAACAAAACCT  543

seq1  CAACTCTAGAATTGTTCCAAGACTGATGCAGAGCAGAAGCCAAGCTGAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTAGAATTGTTCCAAGACTGATGCAGAGCAGAAGCCAAGCTGAAG  593

seq1  ATGAAATAAAGCATGAAATCCCAACAGAAAGCCTGTTTAGTCAACAATGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAAGCATGAAATCCCAACAGAAAGCCTGTTTAGTCAACAATGC  643

seq1  CAGAAAGCTTACACTGGAAGGCAAAGGCTTCTGAAAACTAAGAGCTATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCTTACACTGGAAGGCAAAGGCTTCTGAAAACTAAGAGCTATTT  693

seq1  TATAAAAAACAAAGGGGTAGGAGCTGAAGGGGTCTGTAACCCTATAGGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAACAAAGGGGTAGGAGCTGAAGGGGTCTGTAACCCTATAGGAG  743

seq1  GAACAGCCAGTACCCCCTGAGCTCATGTCTCTAGCTGTATATGTAGCAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCAGTACCCCCTGAGCTCATGTCTCTAGCTGTATATGTAGCAGA  793

seq1  AGATGGCCAAATTGGCAATCATTGGGAGGAGAGGCCCTTGGTCTTGCAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCAAATTGGCAATCATTGGGAGGAGAGGCCCTTGGTCTTGCAAA  843

seq1  GATTACATGCGCCAATACAGGGGAATGCTAGGGCCAGGAAGCAGGAGTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACATGCGCCAATACAGGGGAATGCTAGGGCCAGGAAGCAGGAGTGG  893

seq1  GTGGGTTGGAGTGCAGGGTGGGGAGAGGGTATAAGGGATTTTGGGGATAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGGAGTGCAGGGTGGGGAGAGGGTATAAGGGATTTTGGGGATAG  943

seq1  CATTTGAATTGTAGATGAAGAAAATATCTAACAAAAAAATTGTTAAAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAATTGTAGATGAAGAAAATATCTAACAAAAAAATTGTTAAAAAA  993

seq1  AAAACCAAAAAAACAAAGGGGTTTCTATGGGGAAAACCTAGGACAACATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAAAACAAAGGGGTTTCTATGGGGAAAACCTAGGACAACATA  1043

seq1  AACCCACATGCAGTTAGCAGCAGGGTGCTCCTTTGTTTTCTTTGTTGGAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACATGCAGTTAGCAGCAGGGTGCTCCTTTGTTTTCTTTGTTGGAC  1093

seq1  ACAGAATTC  1105
      |||||||||
seq2  ACAGAATTC  1102