BAC Information

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BAC

Clone NameB6Ng01-221P15
Chromosome2 (Build37)
Map Location 101,261,846 - 101,263,035
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221P15.bB6Ng01-221P15.g
ACCGA037123GA037124
length1,202988
definitionB6Ng01-221P15.b B6Ng01-221P15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaggcagtttttccaagaaaagcaattcaatgagaagctgaga
gaagctagtttgaatcagtcagcttggagagaagttttgagccagaacag
ctaagtcaaataagccatccagagtttagaaagaactagaaaggatgagc
tcgttcagcaggaagcctctgagacaactattatatctggtgaattaaaa
agaaacatttacagtagtgttgcaaatatgtagtatttaccaatcagtat
acttattcttgaattattgaaattatagatttttctgagaccaagattat
cccgagaatcttcacttggaccatccttattttatgtaagtttcatagta
ccaaatcttcacagagcatcctactgaaagaaaaaaactacacagtactt
ctctgcacacctctggtttcaaaggccccctccagtatattagaaatact
cagggagctgtaaaattcactaatgaccttatcttgacaaaccacatcaa
aaactgtgaatctctgaatgcataaacattgtttaagtcctcaggtaatg
ctaatgtgaatctgaagcttagcaccatccatcctcttcccagattgtta
atcatactgattatcattatccgacatgaagagtttatgtgttgctttcc
tgctacagtagaagttagctgaagtcatggcattgtgtatttgaacctag
tgttaagccagacacatggcatcagtagaaaagtttatgtggaagaaaca
aaaaagttaaaggaaaaaaagggagagaagaaaaggagaaataaagaaaa
atgaagggagaggaagagttgaaagaaccaaagaaaggtggtgtccattt
ttaatatcttgcaactttgaagtgatattcagttagtaactgatttacta
tatcttccacacactgaagaaaagagggaattctgatctagttgagatac
tggccacgggggcctttggcaagcatgaccatttgagaatatacaacatc
aagtataagcttagagtcaatatagaaagtatagctgccaactaattttt
tactttttcttgttcttttattacacaaacaatccttatagtttgtattt
tttgatggacgtatccacttagaattaaggcagtacagggaaaggaatcg
tcaggaggtcaactccattacaattggccaatttatatttccatggaaaa
ca

gaattcactcggacaaccggattcttctatggcaaagctttattgcttca
tctgaaggaagaccccgaacaaggaaaatggtgccgcctatatacccctc
cgtgtgacatgtcagctcctgattagctgctcactcatcaccccactact
acgccccgggatgggcagtgacttggcacgaatttactcttgcacctgcg
cacattacttgtttaccagttaggcacagtagaggctcatgatggcgatt
gctcacggctctccacacatggtggaacatgcatccttgcggtatggtag
aatatcttttgggtatatttttactagtggtatagctgggtcttcaggta
gagctatttcaaattttctgaggaaccaactgccacattgatttccagag
tggttgtaccagtttgccatcccaccagtaatagagcagtgtttctcttt
ctccacatccttgccagcatgtactgtcacttgagtgttttattttggcc
attctgactggtgtaaggtagaaatctcagggtcattttgatttgaattt
ctctgatgattaatgtcttagtcagggtttctattcctgcacaaacatca
tgactaagaggcaagttggggaggaaagggtttattcagcttacacttct
gtactgctgttcatcaccaagggaagtcaggactggaactcaagcaggtc
aggaagcaggagctgatgcagaggccacggagggatgttacttactggct
tgtttcccctgggcttgctcagcctgctcctttctctgtgataactctag
cctgtgtcaagttgacacaaaacccgccagtacaattaaggatgttgaaa
attatttaagtgtttctgaaccattcgagattcctctgttgggaattctc
tatttagctctgtaccctgttttttaattgggttatttgctttttaagag
tctaacttctgagctctttgtatatttttgaaatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101261846_101263035
seq2: B6Ng01-221P15.b_47_1248

seq1  GAATTCAGAGGCAGTTTTTCCAAGAAAAGCAATTCAATGAGAAGCTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCAGTTTTTCCAAGAAAAGCAATTCAATGAGAAGCTGAGA  50

seq1  GAAGCTAGTTTGAATCAGTCAGCTTGGAGAGAAGTTTTGAGCCAGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGTTTGAATCAGTCAGCTTGGAGAGAAGTTTTGAGCCAGAACAG  100

seq1  CTAAGTCAAATAAGCCATCCAGAGTTTAGAAAGAACTAGAAAGGATGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCAAATAAGCCATCCAGAGTTTAGAAAGAACTAGAAAGGATGAGC  150

seq1  TCGTTCAGCAGGAAGCCTCTGAGACAACTATTATATCTGGTGAATTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCAGCAGGAAGCCTCTGAGACAACTATTATATCTGGTGAATTAAAA  200

seq1  AGAAACATTTACAGTAGTGTTGCAAATATGTAGTATTTACCAATCAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTTACAGTAGTGTTGCAAATATGTAGTATTTACCAATCAGTAT  250

seq1  ACTTATTCTTGAATTATTGAAATTATAGATTTTTCTGAGACCAAGATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTCTTGAATTATTGAAATTATAGATTTTTCTGAGACCAAGATTAT  300

seq1  CCCGAGAATCTTCACTTGGACCATCCTTATTTTATGTAAGTTTCATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGAATCTTCACTTGGACCATCCTTATTTTATGTAAGTTTCATAGTA  350

seq1  CCAAATCTTCACAGAGCATCCTACTGAAAGAAAAAAACTACACAGTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTTCACAGAGCATCCTACTGAAAGAAAAAAACTACACAGTACTT  400

seq1  CTCTGCACACCTCTGGTTTCAAAGGCCCCCTCCAGTATATTAGAAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACACCTCTGGTTTCAAAGGCCCCCTCCAGTATATTAGAAATACT  450

seq1  CAGGGAGCTGTAAAATTCACTAATGACCTTATCTTGACAAACCACATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCTGTAAAATTCACTAATGACCTTATCTTGACAAACCACATCAA  500

seq1  AAACTGTGAATCTCTGAATGCATAAACATTGTTTAAGTCCTCAGGTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGAATCTCTGAATGCATAAACATTGTTTAAGTCCTCAGGTAATG  550

seq1  CTAATGTGAATCTGAAGCTTAGCACCATCCATCCTCTTCCCAGATTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTGAATCTGAAGCTTAGCACCATCCATCCTCTTCCCAGATTGTTA  600

seq1  ATCATACTGATTATCATTATCCGACATGAAGAGTTTATGTGTTGCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTGATTATCATTATCCGACATGAAGAGTTTATGTGTTGCTTTCC  650

seq1  TGCTACAGTAGAAGTTAGCTGAAGTCATGGCATTGTGTATTTGAACCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGTAGAAGTTAGCTGAAGTCATGGCATTGTGTATTTGAACCTAG  700

seq1  TGTTAAGCCAGACACATGGCATCAGTAGAAAAGTTTATGTGGAAGAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCCAGACACATGGCATCAGTAGAAAAGTTTATGTGGAAGAAACA  750

seq1  AAAAAGTTAAAGGAAAAAAAGGGAGAGAAGAAAAGGAGAAATAAAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTAAAGGAAAAAAAGGGAGAGAAGAAAAGGAGAAATAAAGAAAA  800

seq1  ATGAAGGGAGAGGAAGAGTTGAAAGAACCAAAG-AAGGTGGTGTCCATTT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGAAGGGAGAGGAAGAGTTGAAAGAACCAAAGAAAGGTGGTGTCCATTT  850

seq1  TTAATATCTTGCAACTTTGAAGTGATATTCAGTTAGTAACTGATTTACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCTTGCAACTTTGAAGTGATATTCAGTTAGTAACTGATTTACTA  900

seq1  TATCTTCCACACACTGAAGAAAAGAGGGAATTCTGATCTAGTTGAGATAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCACACACTGAAGAAAAGAGGGAATTCTGATCTAGTTGAGATAC  950

seq1  TGGCCACGGGGGCCTTTGGCAAGCATGACCATTTGAG-ATATACAACATC  998
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGCCACGGGGGCCTTTGGCAAGCATGACCATTTGAGAATATACAACATC  1000

seq1  AAAGTATAAAGCTTAGAGTCAATATAGAAAGTTATAGCTGCCAACTAATT  1048
       |||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  -AAGTAT-AAGCTTAGAGTCAATATAGAAAG-TATAGCTGCCAACTAATT  1047

seq1  TTTAACTTTTTCTTGTTCTTTTATTACACAAACCATCCTTATAG-TTGTA  1097
      ||| ||||||||||||||||||||||||||||| |||||||||| |||||
seq2  TTTTACTTTTTCTTGTTCTTTTATTACACAAACAATCCTTATAGTTTGTA  1097

seq1  TTTTTTGATGACCTTAT-CACTTAGAA-TAAAGCAGTACAGG--AAGG-A  1142
      ||||||||||  | ||| ||||||||| ||| ||||||||||  |||| |
seq2  TTTTTTGATGGACGTATCCACTTAGAATTAAGGCAGTACAGGGAAAGGAA  1147

seq1  GCGCCAGGAAGTCAACTCCATAACA--TGGC--ATTTATAT---CATAGA  1185
       || ||||| ||||||||||| |||  ||||  ||||||||   ||| ||
seq2  TCGTCAGGAGGTCAACTCCATTACAATTGGCCAATTTATATTTCCATGGA  1197

seq1  AAACA  1190
      |||||
seq2  AAACA  1202


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