BAC Information

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BAC

Clone NameB6Ng01-222B15
Chromosome2 (Build37)
Map Location 137,682,732 - 137,827,605
singlet/doubletdoublet
Overlap genenone
Upstream geneMkks, 2210009G21Rik, Jag1
Downstream geneBtbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222B15.bB6Ng01-222B15.g
ACCGA037218GA037219
length1,1471,149
definitionB6Ng01-222B15.b B6Ng01-222B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,682,732 - 137,683,849)(137,826,440 - 137,827,605)
sequence
gaattccattctggatttgttatcttctctgctaatttccctagtctctt
ttgatataatgcttaattaatatgtctctacctgcttgctttttgcagaa
ttaagaaaacaagaactgacagaagtattgctatattccctttaaaagaa
gttaaatccaatttctggctatttcctttcatttatggctgtgaattagg
ctgctataccaaggcaacactcatttattctcagctgtttgactgattat
tggtccccatggcagcagtgtacaatacctccccccccaaaaaaatatta
caaaataaattcctttacaactgagactgataacaggagtcatctacttg
tgaaaacagaaatgtttagatggcaatttgatcagcacaccctagttatt
taatagtcttactacctaggcttatgacttaactcaatagaggttttgta
ataaaactatctgtcctcttctgtgaagtaggctctaaatccagcaaaac
aatggctgtacctattacataagtgctagtgttacaccaagagacttccc
aaaatattgataatgtaaaaggcaggccccatcactgaaaattatctaga
gtaatgttttctaagaagaccacctagcacctattcaaaaccataaaaaa
atgattagcaagaaatggactcccatgtcagtaccaacataatttctctg
tcattcacaccacacaaggtgtatggaatctttaccaatagtttttacca
tacaatatttagcacatagcaatggctaaaacatttgttgttttataggg
tcttagaagcattactgtcaaatttattcattggccttccatattattgg
gattttccatccaactgtcttacagctttttccatctgcgtttgcatgcc
ctttctcaatttaaaattgttcaagggctgttcttaatctttcttgataa
ttttatgggatctgtatcataacacaaagcttagaatttataccacgaaa
taaaaaaggttaccagagacccgtgggtggaaccatgtcttcttgaagcg
ccactaatatgttccattaacaaataaactggctacctactttcaatatg
ccatatggtaaatgtgatacacttaaaaacatacggttccagcacac

gaattcattccttcttgtgtacttttcttactttcttatctctgccatga
ctagagaaggctaatgtgataatatgaaaaggagatggggaagacagaca
aagagttttggacggtatcaaaaaagaaataaaacaaaacaaaaacaaac
aataaagcccaatggaaggatgtatatgagacaggacagagccaagactc
caaaaggcaggaagatcagggagtagaatatgaatgattgcagcctctgg
tcccttgaaaagtcacagggactaaggattctgatatgtgagctggctga
ggttaggagcatgattcagacatttggggattgagaaagatcatcaatcc
tttgtgctggctatgctactatgaggtgatatggagatttagataaagta
tcacatcagaagcatgtgtattgggcccttgataaagctatgattaaaaa
ttggagtaaatgataaggaaaaggtcaagcttgctcttttaaatctttgt
caggtcacctaattaaacattttactgtcattgcttttagtgtgtatttt
cctttagaaagagaatatatgtcatgaggctcgaatttcccattcttatc
ttatgtcagatttctctaaatgaccttactgtgagaatcaaaataaacag
cattgggaagctgaatgtgatcaaatttattactgagctgacaataaaac
aattaggcaaaggagtacatgtggcagtgcaggtggaagaggagagtcac
atgtgctcataaggtagccatcaagccaatgtcagtttgtcatatatgag
aggtgaatgtctatattaaaaccagtgtcattcctgaaattctctggtgt
cttacggaaaggctttcatattctttggaggatgtcaagggcacctaaat
ggatagatacttgagttctgaatagttagacaaattgggttgacatctgg
gtctacagttcttccaacactaggaacacaaaggagatggtccatgatgc
ttgctgacttgcattacaaggtatgagttcatgcttcaaagatatgagtt
gtgtatctagccatgatatttttacagaagaacgatgctcacttgagcca
cgaagttgaatcagtcttcattgaaatcatgtctttctttgaatattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_137682732_137683849
seq2: B6Ng01-222B15.b_45_1191

seq1  GAATTCCATTCTGGATTTGTTATCTTCTCTGCTAATTTCCCTAGTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTGGATTTGTTATCTTCTCTGCTAATTTCCCTAGTCTCTT  50

seq1  TTGATATAATGCTTAATTAATATGTCTCTACCTGCTTGCTTTTTGCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATAATGCTTAATTAATATGTCTCTACCTGCTTGCTTTTTGCAGAA  100

seq1  TTAAGAAAACAAGAACTGACAGAAGTATTGCTATATTCCCTTTAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAACAAGAACTGACAGAAGTATTGCTATATTCCCTTTAAAAGAA  150

seq1  GTTAAATCCAATTTCTGGCTATTTCCTTTCATTTATGGCTGTGAATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATCCAATTTCTGGCTATTTCCTTTCATTTATGGCTGTGAATTAGG  200

seq1  CTGCTATACCAAGGCAACACTCATTTATTCTCAGCTGTTTGACTGATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATACCAAGGCAACACTCATTTATTCTCAGCTGTTTGACTGATTAT  250

seq1  TGGTCCCCATGGCAGCAGTGTACAATACCTCCCCCCCCAAAAAAATATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCATGGCAGCAGTGTACAATACCTCCCCCCCCAAAAAAATATTA  300

seq1  CAAAATAAATTCCTTTACAACTGAGACTGATAACAGGAGTCATCTACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAATTCCTTTACAACTGAGACTGATAACAGGAGTCATCTACTTG  350

seq1  TGAAAACAGAAATGTTTAGATGGCAATTTGATCAGCACACCCTAGTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAGAAATGTTTAGATGGCAATTTGATCAGCACACCCTAGTTATT  400

seq1  TAATAGTCTTACTACCTAGGCTTATGACTTAACTCAATAGAGGTTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTCTTACTACCTAGGCTTATGACTTAACTCAATAGAGGTTTTGTA  450

seq1  ATAAAACTATCTGTCCTCTTCTGTGAAGTAGGCTCTAAATCCAGCAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATCTGTCCTCTTCTGTGAAGTAGGCTCTAAATCCAGCAAAAC  500

seq1  AATGGCTGTACCTATTACATAAGTGCTAGTGTTACACCAAGAGACTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGTACCTATTACATAAGTGCTAGTGTTACACCAAGAGACTTCCC  550

seq1  AAAATATTGATAATGTAAAAGGCAGGCCCCATCACTGAAAATTATCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTGATAATGTAAAAGGCAGGCCCCATCACTGAAAATTATCTAGA  600

seq1  GTAATGTTTTCTAAGAAGACCACCTAGCACCTATTCAAAACCATAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTTTCTAAGAAGACCACCTAGCACCTATTCAAAACCATAAAAAA  650

seq1  ATGATTAGCAAGAAATGGACTCCCATGTCAGTACCAACATAATTTCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAGCAAGAAATGGACTCCCATGTCAGTACCAACATAATTTCTCTG  700

seq1  TCATTCACACCACACAAGGTGTATGGAATCTTTACCAATAG-TTTTACCA  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCATTCACACCACACAAGGTGTATGGAATCTTTACCAATAGTTTTTACCA  750

seq1  TACAATATTTAGCACATAGCAATGGCTAAAACATTTGTTG-TTTATAGGG  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TACAATATTTAGCACATAGCAATGGCTAAAACATTTGTTGTTTTATAGGG  800

seq1  TCTTAGAAGCATTACTGTCAAA-TTATTCATTGGCCTTCCATATTATTGG  847
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTTAGAAGCATTACTGTCAAATTTATTCATTGGCCTTCCATATTATTGG  850

seq1  GATTTTCCATCCAACTGTCTTACAGC-TTTTCCATCTGCG-TTGCATG-C  894
      |||||||||||||||||||||||||| ||||||||||||| ||||||| |
seq2  GATTTTCCATCCAACTGTCTTACAGCTTTTTCCATCTGCGTTTGCATGCC  900

seq1  CTTTCTC-ACTTAAAATTGTTCAA-GGCTGTTCTTAATC-TTCCTGATAA  941
      ||||||| | |||||||||||||| |||||||||||||| ||| ||||||
seq2  CTTTCTCAATTTAAAATTGTTCAAGGGCTGTTCTTAATCTTTCTTGATAA  950

seq1  TTTTAT-GGATCTGTATCAT-ACACAAAGCTTAGAA-TTATACAACGAAA  988
      |||||| ||||||||||||| ||||||||||||||| |||||| ||||||
seq2  TTTTATGGGATCTGTATCATAACACAAAGCTTAGAATTTATACCACGAAA  1000

seq1  TAAAAAA-GTTACCAGAGA-CCGTGGGTGG-ACAATGTCT--CTGAAGCG  1033
      ||||||| ||||||||||| |||||||||| || ||||||   |||||||
seq2  TAAAAAAGGTTACCAGAGACCCGTGGGTGGAACCATGTCTTCTTGAAGCG  1050

seq1  CCACTATAATG-TCCATT-ACAAAT-AACTGG-TAACTAC-TTCAATATG  1078
      ||||||  ||| |||||| |||||| |||||| || |||| |||||||||
seq2  CCACTAATATGTTCCATTAACAAATAAACTGGCTACCTACTTTCAATATG  1100

seq1  C--AATGGTAAATGTGATAC----TAAAACATAAGG-TCCAGCACAC  1118
      |   ||||||||||||||||     |||||||| || ||||||||||
seq2  CCATATGGTAAATGTGATACACTTAAAAACATACGGTTCCAGCACAC  1147


seq1: chr2_137826440_137827605
seq2: B6Ng01-222B15.g_67_1215 (reverse)

seq1  GTAATA-TCAAAG-AAGACATGTATTTTAAGGGAAGACTGAATTCTCAAA  48
      |||||| |||||| |||||||| |||| ||  |||||||| ||||   ||
seq2  GTAATATTCAAAGAAAGACATG-ATTTCAA-TGAAGACTG-ATTC---AA  44

seq1  CTTCGTTGCTCAAAGTGAGCATCGTTTCTTTCCTGTAAAAAATTCTCATG  98
      |||||| |||| |||||||||||| |||||  |||||||||  | |||||
seq2  CTTCGTGGCTC-AAGTGAGCATCG-TTCTT--CTGTAAAAA--TATCATG  88

seq1  GCTAGATACACCAACCTCATATCCTTTGAAGGCATGGACCTTCATACCTT  148
      |||||||||||  | ||||||| ||||||| ||||| ||  |||||||||
seq2  GCTAGATACAC--AACTCATAT-CTTTGAA-GCATGAAC--TCATACCTT  132

seq1  GTAATGGCAAGTCAGCAAGCATCATGGACCATCTCCTTTGTGTTCCTAGT  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAT-GCAAGTCAGCAAGCATCATGGACCATCTCCTTTGTGTTCCTAGT  181

seq1  GTTGGAAGAACTGTAGACCCAGATGTCAACCAAATTTGTCTAACTATTCA  248
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTGGAAGAACTGTAGACCCAGATGTCAACCCAATTTGTCTAACTATTCA  231

seq1  GAACTCAAGTATCTATCCATTTAGGTGCCCTTGACATCCTCCAAAGAATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAGTATCTATCCATTTAGGTGCCCTTGACATCCTCCAAAGAATA  281

seq1  TGAAAGCCTTTCCGTAAGACACCAGAGAATTTCAGGAATGACACTGGTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCTTTCCGTAAGACACCAGAGAATTTCAGGAATGACACTGGTTT  331

seq1  TAATATAGACATTCACCTCTCATATATGACAAACTGACATTGGCTTGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAGACATTCACCTCTCATATATGACAAACTGACATTGGCTTGATG  381

seq1  GCTACCTTATGAGCACATGTGACTCTCCTCTTCCACCTGCACTGCCACAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTATGAGCACATGTGACTCTCCTCTTCCACCTGCACTGCCACAT  431

seq1  GTACTCCTTTGCCTAATTGTTTTATTGTCAGCTCAGTAATAAATTTGATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCTTTGCCTAATTGTTTTATTGTCAGCTCAGTAATAAATTTGATC  481

seq1  ACATTCAGCTTCCCAATGCTGTTTATTTTGATTCTCACAGTAAGGTCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGCTTCCCAATGCTGTTTATTTTGATTCTCACAGTAAGGTCATT  531

seq1  TAGAGAAATCTGACATAAGATAAGAATGGGAAATTCGAGCCTCATGACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATCTGACATAAGATAAGAATGGGAAATTCGAGCCTCATGACAT  581

seq1  ATATTCTCTTTCTAAAGGAAAATACACACTAAAAGCAATGACAGTAAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCTTTCTAAAGGAAAATACACACTAAAAGCAATGACAGTAAAAT  631

seq1  GTTTAATTAGGTGACCTGACAAAGATTTAAAAGAGCAAGCTTGACCTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTAGGTGACCTGACAAAGATTTAAAAGAGCAAGCTTGACCTTTT  681

seq1  CCTTATCATTTACTCCAATTTTTAATCATAGCTTTATCAAGGGCCCAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCATTTACTCCAATTTTTAATCATAGCTTTATCAAGGGCCCAATA  731

seq1  CACATGCTTCTGATGTGATACTTTATCTAAATCTCCATATCACCTCATAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTTCTGATGTGATACTTTATCTAAATCTCCATATCACCTCATAG  781

seq1  TAGCATAGCCAGCACAAAGGATTGATGATCTTTCTCAATCCCCAAATGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAGCCAGCACAAAGGATTGATGATCTTTCTCAATCCCCAAATGTC  831

seq1  TGAATCATGCTCCTAACCTCAGCCAGCTCACATATCAGAATCCTTAGTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATGCTCCTAACCTCAGCCAGCTCACATATCAGAATCCTTAGTCC  881

seq1  CTGTGACTTTTCAAGGGACCAGAGGCTGCAATCATTCATATTCTACTCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTTTTCAAGGGACCAGAGGCTGCAATCATTCATATTCTACTCCC  931

seq1  TGATCTTCCTGCCTTTTGGAGTCTTGGCTCTGTCCTGTCTCATATACATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCCTGCCTTTTGGAGTCTTGGCTCTGTCCTGTCTCATATACATC  981

seq1  CTTCCATTGGGCTTTATTGTTTGTTTTTGTTTTGTTTTATTTCTTTTTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTGGGCTTTATTGTTTGTTTTTGTTTTGTTTTATTTCTTTTTTG  1031

seq1  ATACCGTCCAAAACTCTTTGTCTGTCTTCCCCATCTCCTTTTCATATTAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGTCCAAAACTCTTTGTCTGTCTTCCCCATCTCCTTTTCATATTAT  1081

seq1  CACATTAGCCTTCTCTAGTCATGGCAGAGATAAGAAAGTAAGAAAAGTAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGCCTTCTCTAGTCATGGCAGAGATAAGAAAGTAAGAAAAGTAC  1131

seq1  ACAAGAAGGAATGAATTC  1166
      ||||||||||||||||||
seq2  ACAAGAAGGAATGAATTC  1149


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