BAC Information

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BAC

Clone NameB6Ng01-222I09
Chromosome2 (Build37)
Map Location 143,273,215 - 143,399,340
singlet/doubletdoublet
Overlap geneLOC668915, LOC668916, Pcsk2
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222I09.bB6Ng01-222I09.g
ACCGA037516GA037517
length1,018586
definitionB6Ng01-222I09.b B6Ng01-222I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,273,215 - 143,274,237)(143,398,755 - 143,399,340)
sequence
gaattcagtcatccaccaattctagtgtaagcagcagccacatttctgtc
ccttctctgtctcacgactcttgtctggcttcgttttcctcatctgaacc
tccagtcactactcatgccatccctagtcattcctgtgttgctggagagt
aaggagatatatgtatcactttatcttagagtcccttgatgagccaatgt
catgagtttgaaagaatgagggttcaatgagaaccaatgaaaccaacgag
tgattgagcatgtccaagacactgaactccatgttgttgaattggttacc
aagtttttctcgccagcctcctttgttatctcattctagtccccatattc
tgtctatctagggagtgcttgcattacactgtacagttcacatccaaagg
attatagaatattctatagaatattctgactgtgtaaaaaaaccaatttg
aaggttagtgtggggggagacagacagacagacaaatgacagacagacct
gggatatggatccatcatatatcgattacatatgtcgattgcatagcatg
aggtcctgagtatgagttcccagcaacccagcactggggaattagatgga
gacaggaatattctagagtttatgggccactaaacctagtgtaattggca
agctccgggtacagtggggaatcaggaatggtctcaaaagctattgtgga
gagcaactgaacacaccacacacacacatgaatgagagggggagagatgg
agaatggagaaagagaatcaattacaagtaattgggtgattgattgtggc
tgcaggtaaatcccaagagtgccgtgagaggtaagctctgatctgattcc
ctctgatctgagagcagacacagtcaaagtccatagggacctaatgtttc
tagtcatgcccctaaccgaaattttctcttgcttgagggagggaggagag
aggatccatatgcgtcaaatgacgcagtgagcataatcttatcagggaat
ggctcttgccttactgaa
gaattctggcgcggcagtgggggtcaagaaagatgcaggtttctgggcag
aacttaccctggggtctctctctagctgccgcttatggtgtaggctgcgt
cttcttttggcctttgcaagcccattgtgataaaagtgatacaggccttc
tgcaaaggggagctgtggaaagccaaacacaggaggatggttagtttctg
ggttggcaccaggatagaaccacgtgagcaggaactgtatgaggatgcag
gtcaagcctcctatcagagccctgatctctgtcctcttgctttcctcact
ttgcttatctggtatccatttcttcccatttcttccaactccctctattc
tttcttctaggttgtagcttttacaaacttatcttcacactcatactcat
caaattctctacatttctctcagacaagtgtttatacactgcgtggtatc
cagttgccacagggatgtgctgtgacaaagtattctcttgtatgtagcca
tgtcttttatcatctaacaggatggccttacaagttgttgctcacttcta
gggcttccttccttccttccttccttccttccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143273215_143274237
seq2: B6Ng01-222I09.b_46_1063

seq1  GAATTCAGTCATCCACCAATTCTAGTGTAAGCAGCAGCCACATTTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCATCCACCAATTCTAGTGTAAGCAGCAGCCACATTTCTGTC  50

seq1  CCTTCTCTGTCTCACGACTCTTGTCTGGCTTCGTTTTCCTCATCTGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTGTCTCACGACTCTTGTCTGGCTTCGTTTTCCTCATCTGAACC  100

seq1  TCCAGTCACTACTCATGCCATCCCTAGTCATTCCTGTGTTGCTGGAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCACTACTCATGCCATCCCTAGTCATTCCTGTGTTGCTGGAGAGT  150

seq1  AAGGAGATATATGTATCACTTTATCTTAGAGTCCCTTGATGAGCCAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATATATGTATCACTTTATCTTAGAGTCCCTTGATGAGCCAATGT  200

seq1  CATGAGTTTGAAAGAATGAGGGTTCAATGAGAACCAATGAAACCAACGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTTGAAAGAATGAGGGTTCAATGAGAACCAATGAAACCAACGAG  250

seq1  TGATTGAGCATGTCCAAGACACTGAACTCCATGTTGTTGAATTGGTTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAGCATGTCCAAGACACTGAACTCCATGTTGTTGAATTGGTTACC  300

seq1  AAGTTTTTCTCGCCAGCCTCCTTTGTTATCTCATTCTAGTCCCCATATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTCTCGCCAGCCTCCTTTGTTATCTCATTCTAGTCCCCATATTC  350

seq1  TGTCTATCTAGGGAGTGCTTGCATTACACTGTACAGTTCACATCCAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATCTAGGGAGTGCTTGCATTACACTGTACAGTTCACATCCAAAGG  400

seq1  ATTATAGAATATTCTATAGAATATTCTGACTGTGTAAAAAAACCAATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGAATATTCTATAGAATATTCTGACTGTGTAAAAAAACCAATTTG  450

seq1  AAGGTTAGTGTGGGGGGAGACAGACAGACAGACAAATGACAGACAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAGTGTGGGGGGAGACAGACAGACAGACAAATGACAGACAGACCT  500

seq1  GGGATATGGATCCATCATATATCGATTACATATGTCGATTGCATAGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATGGATCCATCATATATCGATTACATATGTCGATTGCATAGCATG  550

seq1  AGGTCCTGAGTATGAGTTCCCAGCAACCCAGCACTGGGGAATTAGATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGAGTATGAGTTCCCAGCAACCCAGCACTGGGGAATTAGATGGA  600

seq1  GACAGGAATATTCTAGAGTTTATGGGCCACTAAACCTAGTGTAATTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAATATTCTAGAGTTTATGGGCCACTAAACCTAGTGTAATTGGCA  650

seq1  AGCTCCGGGTACAGTGGGGAATCAGGAATGGTCTCAAAAGCTATTGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGGGTACAGTGGGGAATCAGGAATGGTCTCAAAAGCTATTGTGGA  700

seq1  GAGCAACTGAACACACCACACACACACATGAATGAGAGGGGGAGAGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACTGAACACACCACACACACACATGAATGAGAGGGGGAGAGATGG  750

seq1  AGAATGGAGAAAGAGAATCAATTACAAGTAATTGGGTGATTGATTGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAGAAAGAGAATCAATTACAAGTAATTGGGTGATTGATTGTGGC  800

seq1  TGCAGGTAAATCCCAAGAGTGCCGTGAGAGGTAAGCTCTGATCTGATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTAAATCCCAAGAGTGCCGTGAGAGGTAAGCTCTGATCTGATTCC  850

seq1  CTCTGATCTGAGAGCAGACACAGTCAAAGTCCATAGGGACCTAATGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCTGAGAGCAGACACAGTCAAAGTCCATAGGGACCTAATGTTTC  900

seq1  TAGTCATGCCCCTAACCGAAAATTTTCTCTTGCTTGAGGGAGGGAGGGAG  950
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  TAGTCATGCCCCTAACCG-AAATTTTCTCTTGCTTGAGGGAGGGA-GGAG  948

seq1  AGAGGATCCATAAGGCCTTCAAATGACGCAGTGAGCACTACTCATATCAG  1000
      |||||||||||| |  | ||||||||||||||||||| || || ||||||
seq2  AGAGGATCCATATG--CGTCAAATGACGCAGTGAGCA-TAATCTTATCAG  995

seq1  GGAATGCCACATGCCTTACTGAA  1023
      |||||| | | ||||||||||||
seq2  GGAATGGCTCTTGCCTTACTGAA  1018

seq1: chr2_143398755_143399340
seq2: B6Ng01-222I09.g_69_654 (reverse)

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGCCCTAGAAGTGAGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGCCCTAGAAGTGAGCAAC  50

seq1  AACTTGTAAGGCCATCCTGTTAGATGATAAAAGACATGGCTACATACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTAAGGCCATCCTGTTAGATGATAAAAGACATGGCTACATACAAG  100

seq1  AGAATACTTTGTCACAGCACATCCCTGTGGCAACTGGATACCACGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTTTGTCACAGCACATCCCTGTGGCAACTGGATACCACGCAGTG  150

seq1  TATAAACACTTGTCTGAGAGAAATGTAGAGAATTTGATGAGTATGAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACACTTGTCTGAGAGAAATGTAGAGAATTTGATGAGTATGAGTGT  200

seq1  GAAGATAAGTTTGTAAAAGCTACAACCTAGAAGAAAGAATAGAGGGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAGTTTGTAAAAGCTACAACCTAGAAGAAAGAATAGAGGGAGTT  250

seq1  GGAAGAAATGGGAAGAAATGGATACCAGATAAGCAAAGTGAGGAAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAATGGGAAGAAATGGATACCAGATAAGCAAAGTGAGGAAAGCAA  300

seq1  GAGGACAGAGATCAGGGCTCTGATAGGAGGCTTGACCTGCATCCTCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGAGATCAGGGCTCTGATAGGAGGCTTGACCTGCATCCTCATAC  350

seq1  AGTTCCTGCTCACGTGGTTCTATCCTGGTGCCAACCCAGAAACTAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGCTCACGTGGTTCTATCCTGGTGCCAACCCAGAAACTAACCAT  400

seq1  CCTCCTGTGTTTGGCTTTCCACAGCTCCCCTTTGCAGAAGGCCTGTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTGTTTGGCTTTCCACAGCTCCCCTTTGCAGAAGGCCTGTATCA  450

seq1  CTTTTATCACAATGGGCTTGCAAAGGCCAAAAGAAGACGCAGCCTACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCACAATGGGCTTGCAAAGGCCAAAAGAAGACGCAGCCTACACC  500

seq1  ATAAGCGGCAGCTAGAGAGAGACCCCAGGGTAAGTTCTGCCCAGAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCGGCAGCTAGAGAGAGACCCCAGGGTAAGTTCTGCCCAGAAACCT  550

seq1  GCATCTTTCTTGACCCCCACTGCCGCGCCAGAATTC  586
      ||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTCTTGACCCCCACTGCCGCGCCAGAATTC  586