BAC Information

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BAC

Clone NameB6Ng01-222J12
Chromosome2 (Build37)
Map Location 76,495,415 - 76,705,183
singlet/doubletdoublet
Overlap geneDfnb59, Fkbp7, Plekha3, Ttn
Upstream geneLOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra
Downstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222J12.bB6Ng01-222J12.g
ACCGA037570GA037571
length1,129593
definitionB6Ng01-222J12.b B6Ng01-222J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,704,063 - 76,705,183)(76,495,415 - 76,496,007)
sequence
gaattccagtctggtcttgaaaatgtgacttcctgtcactcgtgctccct
cttgtggtcaagaagttgaactgacttgaaaatgttattcctgctacatg
gtttgaaattctgaaaattatcagattaacccaaatgttatgtttacttt
taaaatattgcaaaggaatcacttaggtattagttaaaattaaatttatt
ttaatgctgctaactattatgcctaacaatcaatatgataataataaatc
caatttgtggagcagcttatggaaatatatcatattagttaagaagaaaa
ctgaaaattggggtttgttttctcctcaattatacttctaactactcgtt
gttagatactatttatgcaaaaatataactgagaatacctttcacatgtt
tgactgggtcttctgtggggatttgtttgtgttttattgtgttaaccaag
gaaggaggtaactaattaagagctaagttcccagctcagaaggcagagtc
gggacagttaccaccaacataaggcccataagacaagccaaatggaacta
tatagtaagaccttgcctcagaagcagaacgaaacagacaaacccttaaa
catacaacaaattgaccatctcaaatgctaaatacttaagtagcttccct
gaagccatacaacccaggcagaaggttgcctaagacttcctagggctaca
aattcaaagttgctaggaggattctctcaacatagccataaaacatctac
tggtcaaagctgtgtttttctatagcctggtcactgccactataataaca
tcatggaatgacatgttgagttctcttacgcctgctgcaattgatattaa
aatgtttggtctatttttcagtcagttccaagaaattcagtatttttcat
ccaattttgtgcctagtatactttttttttttttaaagatgttttttttt
aatgtatgtgagtacactgtagcctctcttcagaccataccagaagaggg
catcagaatcccattacggatggttgtgagtcaccatgtggttgctggga
attgaactcaggaacctcttggaggacagtcagaagcttttaaccactga
gccatctccttcagtcccatattcctttc
gaattcatatcagctatgaaatagtcattaaaatgtagttaagtcctaat
aacatcttctccaattcgtttgtagacatttgtgtcacatctgtgtcaaa
aggaggatttgaaagggaagaaacgacaacctttgccatgttctacagac
tgagaaatatactcttcgaaagaagtatgcctgccaatttcatgatgtct
tggtttataatcgctgagtagtattccactgtgtagatgtgccacatttc
ctctactcagttgagggacatccagggtgtttctagcttctggctattat
gaataaagctctatgaacatagtggagcaagtgtccctatggaatggctg
gacatcttttgagtacctgtctaggagcagtacagctgggtcctgggtag
aactattcccaagtttctgagaaaccaccaaattgatttccagagctgtt
gttcaagtttgaactcccactcttcccactccacatcctcagcagcatgt
gcagtcacttgagtttttaatcttagccattctgatgggtgtaagatggg
atctcagagtcctttttacctggaggagggagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_76704063_76705183
seq2: B6Ng01-222J12.b_46_1174 (reverse)

seq1  GAAA-GTATAT-GGACTGGA-GAGATGGCTCAGTGGTTAAAAGC-TCTGA  46
      |||| | |||| |||||| | ||||||||||||||||||||||| |||||
seq2  GAAAGGAATATGGGACTGAAGGAGATGGCTCAGTGGTTAAAAGCTTCTGA  50

seq1  CTGCTCTTCCAGAGG-TCCTGAGTTCAA-TCCCAGCAACCACATGGTGAC  94
      |||  || | ||||| |||||||||||| |||||||||||||||||||||
seq2  CTGTCCTCCAAGAGGTTCCTGAGTTCAATTCCCAGCAACCACATGGTGAC  100

seq1  TCACAACCATCCGTAATGGGA-TCTGATGCCCTCTTCTGGTAT-GTCTGA  142
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  TCACAACCATCCGTAATGGGATTCTGATGCCCTCTTCTGGTATGGTCTGA  150

seq1  AGAGA-GCTACAGTGTACTCACATACATTAAAAAAAAACAATCTTT-AAA  190
      ||||| ||||||||||||||||||||||||||||||||| |||||| |||
seq2  AGAGAGGCTACAGTGTACTCACATACATTAAAAAAAAAC-ATCTTTAAAA  199

seq1  AAAAAAAAAGTATACTAGGCACAAAATTGGATGAAAAATACTGAATTTCT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAAAAAAAGTATACTAGGCACAAAATTGGATGAAAAATACTGAATTTC-  248

seq1  TTGGAACTGACTGAAAAATAGACCAAACATTTTAATATCAATTGCAGCAG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTGACTGAAAAATAGACCAAACATTTTAATATCAATTGCAGCAG  298

seq1  GCGTAAGAGAACTCAACATGTCATTCCATGATGTTATTATAGTGGCAGTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAAGAGAACTCAACATGTCATTCCATGATGTTATTATAGTGGCAGTG  348

seq1  ACCAGGCTATAGAAAAACACAGCTTTGACCAGTAGATGTTTTATGGCTAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTATAGAAAAACACAGCTTTGACCAGTAGATGTTTTATGGCTAT  398

seq1  GTTGAGAGAATCCTCCTAGCAACTTTGAATTTGTAGCCCTAGGAAGTCTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGAATCCTCCTAGCAACTTTGAATTTGTAGCCCTAGGAAGTCTT  448

seq1  AGGCAACCTTCTGCCTGGGTTGTATGGCTTCAGGGAAGCTACTTAAGTAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACCTTCTGCCTGGGTTGTATGGCTTCAGGGAAGCTACTTAAGTAT  498

seq1  TTAGCATTTGAGATGGTCAATTTGTTGTATGTTTAAGGGTTTGTCTGTTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTTGAGATGGTCAATTTGTTGTATGTTTAAGGGTTTGTCTGTTT  548

seq1  CGTTCTGCTTCTGAGGCAAGGTCTTACTATATAGTTCCATTTGGCTTGTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTGCTTCTGAGGCAAGGTCTTACTATATAGTTCCATTTGGCTTGTC  598

seq1  TTATGGGCCTTATGTTGGTGGTAACTGTCCCGACTCTGCCTTCTGAGCTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGCCTTATGTTGGTGGTAACTGTCCCGACTCTGCCTTCTGAGCTG  648

seq1  GGAACTTAGCTCTTAATTAGTTACCTCCTTCCTTGGTTAACACAATAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTAGCTCTTAATTAGTTACCTCCTTCCTTGGTTAACACAATAAAA  698

seq1  CACAAACAAATCCCCACAGAAGACCCAGTCAAACATGTGAAAGGTATTCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAAATCCCCACAGAAGACCCAGTCAAACATGTGAAAGGTATTCT  748

seq1  CAGTTATATTTTTGCATAAATAGTATCTAACAACGAGTAGTTAGAAGTAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATATTTTTGCATAAATAGTATCTAACAACGAGTAGTTAGAAGTAT  798

seq1  AATTGAGGAGAAAACAAACCCCAATTTTCAGTTTTCTTCTTAACTAATAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGGAGAAAACAAACCCCAATTTTCAGTTTTCTTCTTAACTAATAT  848

seq1  GATATATTTCCATAAGCTGCTCCACAAATTGGATTTATTATTATCATATT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTTCCATAAGCTGCTCCACAAATTGGATTTATTATTATCATATT  898

seq1  GATTGTTAGGCATAATAGTTAGCAGCATTAAAATAAATTTAATTTTAACT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTAGGCATAATAGTTAGCAGCATTAAAATAAATTTAATTTTAACT  948

seq1  AATACCTAAGTGATTCCTTTGCAATATTTTAAAAGTAAACATAACATTTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTAAGTGATTCCTTTGCAATATTTTAAAAGTAAACATAACATTTG  998

seq1  GGTTAATCTGATAATTTTCAGAATTTCAAACCATGTAGCAGGAATAACAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATCTGATAATTTTCAGAATTTCAAACCATGTAGCAGGAATAACAT  1048

seq1  TTTCAAGTCAGTTCAACTTCTTGACCACAAGAGGGAGCACGAGTGACAGG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTCAGTTCAACTTCTTGACCACAAGAGGGAGCACGAGTGACAGG  1098

seq1  AAGTCACATTTTCAAGACCAGACTGGAATTC  1121
      |||||||||||||||||||||||||||||||
seq2  AAGTCACATTTTCAAGACCAGACTGGAATTC  1129

seq1: chr2_76495415_76496007
seq2: B6Ng01-222J12.g_69_661

seq1  GAATTCATATCAGCTATGAAATAGTCATTAAAATGTAGTTAAGTCCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCAGCTATGAAATAGTCATTAAAATGTAGTTAAGTCCTAAT  50

seq1  AACATCTTCTCCAATTCGTTTGTAGACATTTGTGTCACATCTGTGTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTCTCCAATTCGTTTGTAGACATTTGTGTCACATCTGTGTCAAA  100

seq1  AGGAGGATTTGAAAGGGAAGAAACGACAACCTTTGCCATGTTCTACAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATTTGAAAGGGAAGAAACGACAACCTTTGCCATGTTCTACAGAC  150

seq1  TGAGAAATATACTCTTCGAAAGAAGTATGCCTGCCAATTTCATGATGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATATACTCTTCGAAAGAAGTATGCCTGCCAATTTCATGATGTCT  200

seq1  TGGTTTATAATCGCTGAGTAGTATTCCACTGTGTAGATGTGCCACATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATAATCGCTGAGTAGTATTCCACTGTGTAGATGTGCCACATTTC  250

seq1  CTCTACTCAGTTGAGGGACATCCAGGGTGTTTCTAGCTTCTGGCTATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCAGTTGAGGGACATCCAGGGTGTTTCTAGCTTCTGGCTATTAT  300

seq1  GAATAAAGCTCTATGAACATAGTGGAGCAAGTGTCCCTATGGAATGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGCTCTATGAACATAGTGGAGCAAGTGTCCCTATGGAATGGCTG  350

seq1  GACATCTTTTGAGTACCTGTCTAGGAGCAGTACAGCTGGGTCCTGGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTTTGAGTACCTGTCTAGGAGCAGTACAGCTGGGTCCTGGGTAG  400

seq1  AACTATTCCCAAGTTTCTGAGAAACCACCAAATTGATTTCCAGAGCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCCCAAGTTTCTGAGAAACCACCAAATTGATTTCCAGAGCTGTT  450

seq1  GTTCAAGTTTGAACTCCCACTCTTCCCACTCCACATCCTCAGCAGCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTTTGAACTCCCACTCTTCCCACTCCACATCCTCAGCAGCATGT  500

seq1  GCAGTCACTTGAGTTTTTAATCTTAGCCATTCTGATGGGTGTAAGATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCACTTGAGTTTTTAATCTTAGCCATTCTGATGGGTGTAAGATGGG  550

seq1  ATCTCAGAGTCCTTTTTACCTGGAGGAGGGAGGGAGGGAGGGA  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAGTCCTTTTTACCTGGAGGAGGGAGGGAGGGAGGGA  593