BAC Information

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BAC

Clone NameB6Ng01-223C02
Chromosome2 (Build37)
Map Location 34,748,294 - 34,915,670
singlet/doubletdoublet
Overlap genePhf19, Traf1, Hc
Upstream geneLOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik
Downstream geneAI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223C02.bB6Ng01-223C02.g
ACCGA037961GA037962
length1,106541
definitionB6Ng01-223C02.b B6Ng01-223C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,914,587 - 34,915,670)(34,748,294 - 34,748,840)
sequence
ttcctggcccttatacaaaagcatctcctcgcgttctctgaaaacatgag
caaggatacggtttacatcacagtgcttaattgcttggtggttcagcaaa
aatatttgaacctcattctagttagctttcttaccattgagacaaaatac
aggataggagcaatttaaaagaggaatttgtttcatttcacaaagatttc
agagccatcacttactggaagggtgtgatagacagggcagttcctgatgg
ggcagctcagaaatagagagagaatgcgtgccctcaagaggccaccccct
tctctttgcatgtgatcccttggtctatggcatgttgtcattacccatat
tcaaggtatgtggatggcagtccttagttaattaattctctctgaaaaca
actcatagacacaactggccagatgtgctttattactgggccttgagaca
tttttcagtccaagaaagatgatgccctgaacaacttccttgtaataggt
tcttcaggtaggagaagagcttgtattctagataaagaagcagaaaatga
atgaatgacccaatgaaagaatgaataagtaaggacaggtagctttagta
ttatgaagaacaaatgagagagtacagaagccaaggggccattgttttaa
agcaacaccaggaaaggaccttttacaaatgtcatatgcaaatggaacca
gaaggaaattaggaggatgctgtgcaaatgtctgcagaaaatagaaacaa
cccgagtaatatccctgcctgtgccagttcactggcctgagcttctgaga
gtgtggaaaaatatgcaaggtgaaatttcttcctagacacaggctgctgc
attccattacggaccagcttatatggagggaagttctgctgccaatgttt
taaaacatttaatgtatttatttgtctatgtgtgtatgggaaaaggtgta
gggcatgcccattatcacaaacagacatgtggaaattcaagacacctaaa
tggtcagatctctcctttccacttatggtggggttcccaaaaccaaagtc
aagccctaccagttggtggcaaatccctcctatacccttctgaaggcttc
tcttga
ctttccagcatttcttaggacttccagaatctttaaaaatggccactgtg
ggaatgagtaaaaacttatcttttaactgctaactcttactagacataag
catatggctttaaaagaatccttgcatctggctgtgatggtggacccaat
aatcctagcccttccgaggctaaaggagggcaaccgtaagttcaaggcca
gtctaggctataaagggagaccttatctcaaaaccaaaccaaaccacctt
catcaagtaaagaacagcagtggtgacaccatagtaatggcctgaagaca
gagcctagccaggagcatgcacaggagaaagcactaccggatatccaatc
tccgggccttgcttcatggtgtcgacaagtcagccagtctgctgctattg
ctgagtttttcttgcaaataattttaaacacacagtttatgctttataca
aactttgagagcagactttagaagtgaaagggacacttaagttagtaatt
cagagggttttgtgtgtgtgtgtgtgtgtgtgtgagtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_34914587_34915670
seq2: B6Ng01-223C02.b_52_1157 (reverse)

seq1  TCAAGAG-AGC--TCAGAA-GGTA-AAGAGGG--TTGCCACCAACTGAT-  42
      ||||||| |||  |||||| |||| | |||||  ||||||||||||| | 
seq2  TCAAGAGAAGCCTTCAGAAGGGTATAGGAGGGATTTGCCACCAACTGGTA  50

seq1  GGGC-TGACTTTGGTTCTGGGAACCC--ACAT-AGTGG-AAGGAGAGACT  87
      |||| ||||||||||| |||||||||   ||| ||||| |||||||||  
seq2  GGGCTTGACTTTGGTTTTGGGAACCCCACCATAAGTGGAAAGGAGAGATC  100

seq1  TGA-CAATTAGGTGTCTCTGAGTTCCACATGTCTG-TTGTG-TAATGGGC  134
      ||| || ||||||||||   | ||||||||||||| ||||| ||||||||
seq2  TGACCATTTAGGTGTCTTGAATTTCCACATGTCTGTTTGTGATAATGGGC  150

seq1  ATG-CCTACACC-TCTCCCATACACACATAGACAAATAAATACA-TAAAT  181
      ||| |||||||| | ||||||||||||||||||||||||||||| |||||
seq2  ATGCCCTACACCTTTTCCCATACACACATAGACAAATAAATACATTAAAT  200

seq1  GTTTTAAAACATTGGCAGCAGAACTTCCCTCCATATAAGCTGGTCCGT-A  230
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTTTAAAACATTGGCAGCAGAACTTCCCTCCATATAAGCTGGTCCGTAA  250

seq1  TGG-ATGCAGCAGCCTGTGTCTAGGAAGAAATTTCACCTTGCATATTTTT  279
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCAGCAGCCTGTGTCTAGGAAGAAATTTCACCTTGCATATTTTT  300

seq1  CCACACTCTCAGAAGCTCAGGCCAGTGAACTGGCACAGGCAGGGATATTA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCTCAGAAGCTCAGGCCAGTGAACTGGCACAGGCAGGGATATTA  350

seq1  CTCGGGTTGTTTCTATTTTCTGCAGACATTTGCACAGCATCCTCCT-ATT  378
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCGGGTTGTTTCTATTTTCTGCAGACATTTGCACAGCATCCTCCTAATT  400

seq1  TCCTTCTGGTTCCATTTGCATATGACATTTGTAAAAGGTCCTTTCCTGGT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGGTTCCATTTGCATATGACATTTGTAAAAGGTCCTTTCCTGGT  450

seq1  GTTGCTTTAAAACAATGGCCCCTTGGCTTCTGTACTCTCTCATTTGTTCT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTAAAACAATGGCCCCTTGGCTTCTGTACTCTCTCATTTGTTCT  500

seq1  TCATAATACTAAAGCTACCTGTCCTTACTTATTCATTCTTTCATTGGGTC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATACTAAAGCTACCTGTCCTTACTTATTCATTCTTTCATTGGGTC  550

seq1  ATTCATTCATTTTCTGCTTCTTTATCTAGAATACAAGCTCTTCTCCTACC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCATTTTCTGCTTCTTTATCTAGAATACAAGCTCTTCTCCTACC  600

seq1  TGAAGAACCTATTACAAGGAAGTTGTTCAGGGCATCATCTTTCTTGGACT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACCTATTACAAGGAAGTTGTTCAGGGCATCATCTTTCTTGGACT  650

seq1  GAAAAATGTCTCAAGGCCCAGTAATAAAGCACATCTGGCCAGTTGTGTCT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGTCTCAAGGCCCAGTAATAAAGCACATCTGGCCAGTTGTGTCT  700

seq1  ATGAGTTGTTTTCAGAGAGAATTAATTAACTAAGGACTGCCATCCACATA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGTTTTCAGAGAGAATTAATTAACTAAGGACTGCCATCCACATA  750

seq1  CCTTGAATATGGGTAATGACAACATGCCATAGACCAAGGGATCACATGCA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAATATGGGTAATGACAACATGCCATAGACCAAGGGATCACATGCA  800

seq1  AAGAGAAGGGGGTGGCCTCTTGAGGGCACGCATTCTCTCTCTATTTCTGA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGGGGTGGCCTCTTGAGGGCACGCATTCTCTCTCTATTTCTGA  850

seq1  GCTGCCCCATCAGGAACTGCCCTGTCTATCACACCCTTCCAGTAAGTGAT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCCATCAGGAACTGCCCTGTCTATCACACCCTTCCAGTAAGTGAT  900

seq1  GGCTCTGAAATCTTTGTGAAATGAAACAAATTCCTCTTTTAAATTGCTCC  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAAATCTTTGTGAAATGAAACAAATTCCTCTTTTAAATTGCTCC  950

seq1  TATCCTGTATTTTGTCTCAATGGTAAGAAAGCTAACTAGAATGAGGTTCA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTATTTTGTCTCAATGGTAAGAAAGCTAACTAGAATGAGGTTCA  1000

seq1  AATATTTTTGCTGAACCACCAAGCAATTAAGCACTGTGATGTAAACCGTA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTGCTGAACCACCAAGCAATTAAGCACTGTGATGTAAACCGTA  1050

seq1  TCCTTGCTCATGTTTTCAGAGAACGCGAGGAGATGCTTTTGTATAAGGGC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTCATGTTTTCAGAGAACGCGAGGAGATGCTTTTGTATAAGGGC  1100

seq1  CAGGAA  1084
      ||||||
seq2  CAGGAA  1106

seq1: chr2_34748294_34748840
seq2: B6Ng01-223C02.g_66_612

seq1  GAATTCCTTTCCAGCATTTCTTAGGACTTCCAGAATCTTTAAAAATGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCAGCATTTCTTAGGACTTCCAGAATCTTTAAAAATGGCC  50

seq1  ACTGTGGGAATGAGTAAAAACTTATCTTTTAACTGCTAACTCTTACTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGAATGAGTAAAAACTTATCTTTTAACTGCTAACTCTTACTAGA  100

seq1  CATAAGCATATGGCTTTAAAAGAATCCTTGCATCTGGCTGTGATGGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCATATGGCTTTAAAAGAATCCTTGCATCTGGCTGTGATGGTGGA  150

seq1  CCCAATAATCCTAGCCCTTCCGAGGCTAAAGGAGGGCAACCGTAAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAATCCTAGCCCTTCCGAGGCTAAAGGAGGGCAACCGTAAGTTCA  200

seq1  AGGCCAGTCTAGGCTATAAAGGGAGACCTTATCTCAAAACCAAACCAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTCTAGGCTATAAAGGGAGACCTTATCTCAAAACCAAACCAAAC  250

seq1  CACCTTCATCAAGTAAAGAACAGCAGTGGTGACACCATAGTAATGGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCATCAAGTAAAGAACAGCAGTGGTGACACCATAGTAATGGCCTG  300

seq1  AAGACAGAGCCTAGCCAGGAGCATGCACAGGAGAAAGCACTACCGGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGCCTAGCCAGGAGCATGCACAGGAGAAAGCACTACCGGATAT  350

seq1  CCAATCTCCGGGCCTTGCTTCATGGTGTCGACAAGTCAGCCAGTCTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCCGGGCCTTGCTTCATGGTGTCGACAAGTCAGCCAGTCTGCTG  400

seq1  CTATTGCTGAGTTTTTCTTGCAAATAATTTTAAACACACAGTTTATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTGAGTTTTTCTTGCAAATAATTTTAAACACACAGTTTATGCTT  450

seq1  TATACAAACTTTGAGAGCAGACTTTAGAAGTGAAAGGGACACTTAAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAACTTTGAGAGCAGACTTTAGAAGTGAAAGGGACACTTAAGTTA  500

seq1  GTAATTCAGAGGGTTTTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGT  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCAGAGGGTTTTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGT  547