BAC Information

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BAC

Clone NameB6Ng01-223F21
Chromosome2 (Build37)
Map Location 115,597,342 - 115,736,962
singlet/doubletdoublet
Overlap geneBC052040, Mrg1
Upstream geneLOC100043222, LOC100043232, LOC100043236
Downstream geneG630016G05Rik, 2810405F15Rik, LOC433464, Tmco5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223F21.bB6Ng01-223F21.g
ACCGA038129GA038130
length1,0961,171
definitionB6Ng01-223F21.b B6Ng01-223F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,735,872 - 115,736,962)(115,597,342 - 115,598,503)
sequence
gaattcatattctgctaggttaattaaagaatggccaataatttagtctc
aggaggaattcttgactgttcataccctcatataaataatgcctgtctat
ttactatcaggtgaattacaaaataaatttagaattgtatatattatgct
taagtcaatttctattccattgtaaaataaaattttccagtcccagggag
tagttcactatttttaaatgataactctaatgatatagttttgctaaata
attgaggaaacccctttgcagtatattataatgaatcttttaagacaaat
gtaaaagtgcttgcatggtacttcgtggagatgatatgattttccaagat
aacaccagaaaattggtaacagaggggaaaataaaacaatgactaccccc
ctgttgcttacgttacctacacaaaatcttccacagtctaacagaattta
ccaagagactaaaatggattcaaagatcaaaatctctgtaacagaaaagg
gcagcataatgacattgaggtgtgtgtcgtggctaagagtcttggcattt
gactataagagcaaacaagccaatgctctgaaataataatttctaagttt
tcattctgcttttgaattgaaccacagagctgaggtcttagtaagtattc
ataacttggtactgaactgaattcgcaccagatagaatggaaaaggctcg
ggaaggaaacacactgaaaacatccattgggcaagagggccactcagcaa
gctgtttcttacaggagattagatttgaagttcagtttgaatcaggggaa
ggaactgttgttagtagacagatagcagtatgagaggccgtgaaggaggg
gaacttagtccaggaagaaaacggctttctctttctagagaaaaataaac
tttgcagttatctactatacagagaaaggggggggtggagacagagacag
acacagagagaggggcagggagagagagagaaactgagagagactgagag
agaaacagagagagagcgagcccagatccgtagagcagtggaaagagcag
tgtcacacaacagcagcgtgcagtggtggatctggtggagaaagta

gaattctgttatcaacattttaaaactaagacaagatagattgctcccac
tgcaactgagcacagtgcctggtgtctaccaacctcctgcagtcttccca
tagcccctcaaggccctctggtccaggtttgagaatgtccagattacagc
ccagagtaggggtcaagcattctgacagccgcagggtcccagtgagtgat
gggaaagaatcagctaggcaggacaggaccacgcagtgttatcttccatc
tgtgttgatacacagaattcctgagggctacattgtccttctgaacattc
agtgaataggtgcatgggaagaaactagtgtctctagaatgaaacttaat
ggcacagagccttggcaacctgaagtcacagagagcagtggcagccatgg
gcatctgaggatggtagttatatctgagtacctgtgactgagctccctgt
gtgtgtagctagatcagtttctcaaaagaaggaaatttggaaggattcgt
attcaaaatcataatttgtatatattaattcacttaccttttgagacagg
atctcatgcagccctagctggcttcaaacccattgtatagtcagtagcga
ctttcaacttctagccttcctgccttcacaaagctcttaagtactgggat
tataggcacatgtcactatactttgtttatatgctgcaggtagtcaaact
ctggtcctcatgtctgccaggccatgactctgctaagctatatctccagc
ccttcaagcatcttcattaatgagagccaaaccctgatttagtagatcca
tccacagtggtttgtaaggcagctcactttgtgttttcagatgtttcagt
tatgggatggggtgttaacataacaatatgactattagctatcttaaaat
tttccctaattctgcacttcagagccatgacatagagttcagagtagtgg
ttacaatgcctgtaatattagcacttggggtggtggaggcaaaggcatca
agagaccaaggtcatttttaagcttatgtggcaagttccaggccagcctg
agcttacatgaagaccaggagagagaacgcaaaatgatgcagagagaaag
ggagaagtgggggagggcaaaaaactgatcagcttcccagagaccctctt
tgaattgccatgccttaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115735872_115736962
seq2: B6Ng01-223F21.b_46_1141 (reverse)

seq1  TACTTTCTCCA-CAGATC--ACACTGCACGCTGCTG-TGTGTGAACACTG  46
      ||||||||||| ||||||   ||||||||||||||| |||||| ||||||
seq2  TACTTTCTCCACCAGATCCACCACTGCACGCTGCTGTTGTGTG-ACACTG  49

seq1  CTCTTTCCACTGCTCTACGGATCTGGGCTCGCTCTCTCTCTGTTTCTCTC  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCACTGCTCTACGGATCTGGGCTCGCTCTCTCTCTGTTTCTCTC  99

seq1  TCTGTCTCTCTCTGTTTCTCTCTCTCTCCCTGCCCCTCTCTCTGTGTCTG  146
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCTCTCAGTTTCTCTCTCTCTCCCTGCCCCTCTCTCTGTGTCTG  149

seq1  TCTCTGTCTCCA--CCCCCCTTTCTCTGTATAGTAGATAACTTGCAAGTT  194
      ||||||||||||  ||||||||||||||||||||||||||||   |||||
seq2  TCTCTGTCTCCACCCCCCCCTTTCTCTGTATAGTAGATAACTGCAAAGTT  199

seq1  TATTTTTCTCTAGAAAGAGAAAGCCGTTTTCTTCCTGGACTAAGTTCCCC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTCTAGAAAGAGAAAGCCGTTTTCTTCCTGGACTAAGTTCCCC  249

seq1  TCCTTCACGGCCTCTCATACTGCTATCTGTCTACTAACAACAGTTCCTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACGGCCTCTCATACTGCTATCTGTCTACTAACAACAGTTCCTTC  299

seq1  CCCTGATTCAAACTGAACTTCAAATCTAATCTCCTGTAAGAAACAGCTTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATTCAAACTGAACTTCAAATCTAATCTCCTGTAAGAAACAGCTTG  349

seq1  CTGAGTGGCCCTCTTGCCCAATGGATGTTTTCAGTGTGTTTCCTTCCCGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGCCCTCTTGCCCAATGGATGTTTTCAGTGTGTTTCCTTCCCGA  399

seq1  GCCTTTTCCATTCTATCTGGTGCGAATTCAGTTCAGTACCAAGTTATGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCCATTCTATCTGGTGCGAATTCAGTTCAGTACCAAGTTATGAA  449

seq1  TACTTACTAAGACCTCAGCTCTGTGGTTCAATTCAAAAGCAGAATGAAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTAAGACCTCAGCTCTGTGGTTCAATTCAAAAGCAGAATGAAAA  499

seq1  CTTAGAAATTATTATTTCAGAGCATTGGCTTGTTTGCTCTTATAGTCAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATTATTATTTCAGAGCATTGGCTTGTTTGCTCTTATAGTCAAA  549

seq1  TGCCAAGACTCTTAGCCACGACACACACCTCAATGTCATTATGCTGCCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGACTCTTAGCCACGACACACACCTCAATGTCATTATGCTGCCCT  599

seq1  TTTCTGTTACAGAGATTTTGATCTTTGAATCCATTTTAGTCTCTTGGTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTACAGAGATTTTGATCTTTGAATCCATTTTAGTCTCTTGGTAA  649

seq1  ATTCTGTTAGACTGTGGAAGATTTTGTGTAGGTAACGTAAGCAACAGGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTAGACTGTGGAAGATTTTGTGTAGGTAACGTAAGCAACAGGGG  699

seq1  GGTAGTCATTGTTTTATTTTCCCCTCTGTTACCAATTTTCTGGTGTTATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCATTGTTTTATTTTCCCCTCTGTTACCAATTTTCTGGTGTTATC  749

seq1  TTGGAAAATCATATCATCTCCACGAAGTACCATGCAAGCACTTTTACATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAATCATATCATCTCCACGAAGTACCATGCAAGCACTTTTACATT  799

seq1  TGTCTTAAAAGATTCATTATAATATACTGCAAAGGGGTTTCCTCAATTAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAAAAGATTCATTATAATATACTGCAAAGGGGTTTCCTCAATTAT  849

seq1  TTAGCAAAACTATATCATTAGAGTTATCATTTAAAAATAGTGAACTACTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAAACTATATCATTAGAGTTATCATTTAAAAATAGTGAACTACTC  899

seq1  CCTGGGACTGGAAAATTTTATTTTACAATGGAATAGAAATTGACTTAAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACTGGAAAATTTTATTTTACAATGGAATAGAAATTGACTTAAGC  949

seq1  ATAATATATACAATTCTAAATTTATTTTGTAATTCACCTGATAGTAAATA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATACAATTCTAAATTTATTTTGTAATTCACCTGATAGTAAATA  999

seq1  GACAGGCATTATTTATATGAGGGTATGAACAGTCAAGAATTCCTCCTGAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCATTATTTATATGAGGGTATGAACAGTCAAGAATTCCTCCTGAG  1049

seq1  ACTAAATTATTGGCCATTCTTTAATTAACCTAGCAGAATATGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTATTGGCCATTCTTTAATTAACCTAGCAGAATATGAATTC  1096


seq1: chr2_115597342_115598503
seq2: B6Ng01-223F21.g_66_1236

seq1  GAATTCTGTTATCAACATTTTAAAACTAAGACAAGATAGATTGCTCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATCAACATTTTAAAACTAAGACAAGATAGATTGCTCCCAC  50

seq1  TGCAACTGAGCACAGTGCCTGGTGTCTACCAACCTCCTGCAGTCTTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGAGCACAGTGCCTGGTGTCTACCAACCTCCTGCAGTCTTCCCA  100

seq1  TAGCCCCTCAAGGCCCTCTGGTCCAGGTTTGAGAATGTCCAGATTACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTCAAGGCCCTCTGGTCCAGGTTTGAGAATGTCCAGATTACAGC  150

seq1  CCAGAGTAGGGGTCAAGCATTCTGACAGCCGCAGGGTCCCAGTGAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTAGGGGTCAAGCATTCTGACAGCCGCAGGGTCCCAGTGAGTGAT  200

seq1  GGGAAAGAATCAGCTAGGCAGGACAGGACCACGCAGTGTTATCTTCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAATCAGCTAGGCAGGACAGGACCACGCAGTGTTATCTTCCATC  250

seq1  TGTGTTGATACACAGAATTCCTGAGGGCTACATTGTCCTTCTGAACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGATACACAGAATTCCTGAGGGCTACATTGTCCTTCTGAACATTC  300

seq1  AGTGAATAGGTGCATGGGAAGAAACTAGTGTCTCTAGAATGAAACTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATAGGTGCATGGGAAGAAACTAGTGTCTCTAGAATGAAACTTAAT  350

seq1  GGCACAGAGCCTTGGCAACCTGAAGTCACAGAGAGCAGTGGCAGCCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGAGCCTTGGCAACCTGAAGTCACAGAGAGCAGTGGCAGCCATGG  400

seq1  GCATCTGAGGATGGTAGTTATATCTGAGTACCTGTGACTGAGCTCCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAGGATGGTAGTTATATCTGAGTACCTGTGACTGAGCTCCCTGT  450

seq1  GTGTGTAGCTAGATCAGTTTCTCAAAAGAAGGAAATTTGGAAGGATTCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAGCTAGATCAGTTTCTCAAAAGAAGGAAATTTGGAAGGATTCGT  500

seq1  ATTCAAAATCATAATTTGTATATATTAATTCACTTACCTTTTGAGACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAATCATAATTTGTATATATTAATTCACTTACCTTTTGAGACAGG  550

seq1  ATCTCATGCAGCCCTAGCTGGCTTCAAACCCATTGTATAGTCAGTAGCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGCAGCCCTAGCTGGCTTCAAACCCATTGTATAGTCAGTAGCGA  600

seq1  CTTTCAACTTCTAGCCTTCCTGCCTTCACAAAGCTCTTAAGTACTGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACTTCTAGCCTTCCTGCCTTCACAAAGCTCTTAAGTACTGGGAT  650

seq1  TATAGGCACATGTCACTATACTTTGTTTATATGCTGCAGGTAGTCAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCACATGTCACTATACTTTGTTTATATGCTGCAGGTAGTCAAACT  700

seq1  CTGGTCCTCATGTCTGCCAGGCCATGACTCTGCTAAGCTATATCTCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTCATGTCTGCCAGGCCATGACTCTGCTAAGCTATATCTCCAGC  750

seq1  CCTTCAAGCATCTTCATTAATGAGAGCCAAACCCTGATTTAGTAGATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAGCATCTTCATTAATGAGAGCCAAACCCTGATTTAGTAGATCCA  800

seq1  TCCACAGTGGTTTGTAAGGCAGCTCACTTTGTGTTTTCAGATGTTTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTGGTTTGTAAGGCAGCTCACTTTGTGTTTTCAGATGTTTCAGT  850

seq1  TATGGGATGGGGTGTT-ACATAACAATATGACTATTAGCTATCTTAAAAT  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATGGGATGGGGTGTTAACATAACAATATGACTATTAGCTATCTTAAAAT  900

seq1  TTTCCCTAATTCTGCACTTCAGAGCCATGACATAGAGTTCAGAGTAGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAATTCTGCACTTCAGAGCCATGACATAGAGTTCAGAGTAGTGG  950

seq1  -TAC-ATGCCTGTAATATTAGCACTT-GGGTGGTGGAGGCAAAGGCATCA  996
       ||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTACAATGCCTGTAATATTAGCACTTGGGGTGGTGGAGGCAAAGGCATCA  1000

seq1  AGAGACCAAGGTCATTTTT-AGC-TATGTGGCAAGTTCAAGGCCAGCCTG  1044
      ||||||||||||||||||| ||| |||||||||||||| |||||||||||
seq2  AGAGACCAAGGTCATTTTTAAGCTTATGTGGCAAGTTCCAGGCCAGCCTG  1050

seq1  AGC-TACATG-AGACAAGGAGAGAGAA-GGAAAAGGA-GGAGAGAGAAAG  1090
      ||| |||||| |||| ||||||||||| | |||| || | ||||||||||
seq2  AGCTTACATGAAGACCAGGAGAGAGAACGCAAAATGATGCAGAGAGAAAG  1100

seq1  GGAGAAAGTGGGGGAGGGCAAAGAACATGAATCAGCTCCCCAAGAG-CCC  1139
      |||| ||||||||||||||||| ||| || ||||||| ||| |||| |||
seq2  GGAG-AAGTGGGGGAGGGCAAAAAAC-TG-ATCAGCTTCCC-AGAGACCC  1146

seq1  TCTTGAAATTGCCATGC--TAAAAG  1162
      ||||  |||||||||||  ||||||
seq2  TCTTTGAATTGCCATGCCTTAAAAG  1171


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