BAC Information

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BAC

Clone NameB6Ng01-223P08
Chromosome5 (Build37)2 (Build37)
Map Location 123,875,731 - 123,876,019141,288,319 - 141,289,427
singlet/doubletsingletsinglet
Overlap geneMlxip
Upstream geneAnapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a
Downstream geneLOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223P08.bB6Ng01-223P08.g
ACCGA038557GA038558
length1001,109
definitionB6Ng01-223P08.b B6Ng01-223P08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,875,731 - 123,876,019)(141,288,319 - 141,289,427)
sequence
gaattcagttgaggctacattctgggaccctttcagaaaggagagagaca
gagagagagagaaagagagatgaggagagggcaggggaagggaggaggag

gaattcaacattcaaacattacaactatataagaacactattctttggaa
tgatcagcgatagatagctccagcgatagatagttcattctaaaagtctc
caatgagtgctttttattagtgtatacttttagttctttaaaaaaaatcc
ttgacagattatgttaacttaaaaagctcttaaattataaatgctactgg
tattattttgtcacaaatggaaacattgatatgaagaaagctaatagaaa
gatttttagagtgtcaaaactacgaaattatatacttgtatacaattagt
ataattttcctttttacttaattatattgtatttaataatctaaaattat
accacttaagtgcaaaactaaaaattaagaagttgtgatttttaaaaatt
ttaatatacaggcttatgctacagcagtgaagtgaggaaatatgattgat
agtgatattctcataattggactatggagtaacccaatgctggtagggaa
gcttatagaattcattatgaaatcaaaaataacatattttaacctaaatg
ttatgcttcatgatacctgttgattagaaagataaaggtaatgaatgaag
attgatttaatgccatggatttataatttaagtttatggaggaaagagta
atatgcaggataatgtgggactccttaaaaattgttggattaaaaaatgt
gtatatgtaatgatattaagctaaaaatgagttcagtgtgattaaagtag
gcccgttgcatttactgtattcatacctagttatccagccatattcttag
acttccctttaaaagtactctctaaaaagatgagttatgtctcagattga
tattcagagagtttccagaatttctcctgaattaaaccaaatttatatgt
tgtatggaccaaaaccaatgtgaggaagtacttggcactgggcttcaggg
ggaccatagtctcctgctctaaagtaaggcttccctgtgcttgccaaaag
aagtttagaaatgtccatcttccaagtaacggcactgatttcttgatctg
atgatgaatgtcctggcaatgacctcaatggattaagctgaacttagaca
gacctcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123875731_123876019
seq2: B6Ng01-223P08.b_74_143 (reverse)

seq1  CTCCTCCTCCCTTCCCCACATACACGCTAGCAGGTTGTGTGCCACTAAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATGACCTTGGTTTCTCTCTCCCTCTTCATTCATTTTGGATACTCGAACT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GACTTTGAACTCCTACAGTCCTGTCTCAGCCTTCCCACAGAGCCTAGCAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGATTTTCCCTCCCTCCCTTCTCTCTCTAGCTCTCCCTCCCTCTCTCTCT  200
                                              ||| ||| ||
seq2  ----------------------------------------CTC-CTC-CT  8

seq1  CTCTTTTCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCT  249
      | |||  |   | ||||| ||| ||||||| ||||||||||||| |||||
seq2  CCCTTCCCCTGCCCTCTC-CTCATCTCTCTTTCTCTCTCTCTCTGTCTCT  57

seq1  CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGAAA  289
      |||                           ||||||||||
seq2  CTC---------------------------CTTTCTGAAA  70

seq1: chr2_141288319_141289427
seq2: B6Ng01-223P08.g_64_1172 (reverse)

seq1  AAAGAGGTCCTGTCTAAAGTCAGCCTAATTCCATTGAGGCCATTG-CAGG  49
      |||||||| ||||||||  ||||| ||| |||||||||| ||||| ||||
seq2  AAAGAGGT-CTGTCTAAGTTCAGCTTAA-TCCATTGAGGTCATTGCCAGG  48

seq1  ACATTCATCATCAGATCCAAGAAATCAGTGCCGTTACTTGG-AGATGGAC  98
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  ACATTCATCATCAGAT-CAAGAAATCAGTGCCGTTACTTGGAAGATGGAC  97

seq1  ATTTCCTAAACTTC-TTTGGCAAGCACAGGGAAAGCCTTACTTTAGAGCA  147
      |||| ||||||||| |||||||||||||||| ||||||||||||||||||
seq2  ATTT-CTAAACTTCTTTTGGCAAGCACAGGG-AAGCCTTACTTTAGAGCA  145

seq1  GGAGACTATGGTCCCCCTGAAG-CCAGTGCCAAGTACTTCCTCACATTGG  196
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAGACTATGGTCCCCCTGAAGCCCAGTGCCAAGTACTTCCTCACATTGG  195

seq1  TTTTGGTCCATACAACATATAAAATTGGTTTAATTCAGGAG-AATTCTGG  245
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TTTTGGTCCATACAACATATAAATTTGGTTTAATTCAGGAGAAATTCTGG  245

seq1  AAACTCTCTGAATATCAATCTGAGACATAACTCATCTTTTTAGAGAGTAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCTGAATATCAATCTGAGACATAACTCATCTTTTTAGAGAGTAC  295

seq1  TTTTAAAGGGAAGTCTAAGAATATGGCTGGATAACTAGGTATGAATACAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGGAAGTCTAAGAATATGGCTGGATAACTAGGTATGAATACAG  345

seq1  TAAATGCAACGGGCCTACTTTAATCACACTGAACTCATTTTTAGCTTAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAACGGGCCTACTTTAATCACACTGAACTCATTTTTAGCTTAAT  395

seq1  ATCATTACATATACACATTTTTTAATCCAACAATTTTTAAGGAGTCCCAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACATATACACATTTTTTAATCCAACAATTTTTAAGGAGTCCCAC  445

seq1  ATTATCCTGCATATTACTCTTTCCTCCATAAACTTAAATTATAAATCCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTGCATATTACTCTTTCCTCCATAAACTTAAATTATAAATCCAT  495

seq1  GGCATTAAATCAATCTTCATTCATTACCTTTATCTTTCTAATCAACAGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAAATCAATCTTCATTCATTACCTTTATCTTTCTAATCAACAGGT  545

seq1  ATCATGAAGCATAACATTTAGGTTAAAATATGTTATTTTTGATTTCATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAAGCATAACATTTAGGTTAAAATATGTTATTTTTGATTTCATAA  595

seq1  TGAATTCTATAAGCTTCCCTACCAGCATTGGGTTACTCCATAGTCCAATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTATAAGCTTCCCTACCAGCATTGGGTTACTCCATAGTCCAATT  645

seq1  ATGAGAATATCACTATCAATCATATTTCCTCACTTCACTGCTGTAGCATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATATCACTATCAATCATATTTCCTCACTTCACTGCTGTAGCATA  695

seq1  AGCCTGTATATTAAAATTTTTAAAAATCACAACTTCTTAATTTTTAGTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTATATTAAAATTTTTAAAAATCACAACTTCTTAATTTTTAGTTT  745

seq1  TGCACTTAAGTGGTATAATTTTAGATTATTAAATACAATATAATTAAGTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTAAGTGGTATAATTTTAGATTATTAAATACAATATAATTAAGTA  795

seq1  AAAAGGAAAATTATACTAATTGTATACAAGTATATAATTTCGTAGTTTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAATTATACTAATTGTATACAAGTATATAATTTCGTAGTTTTG  845

seq1  ACACTCTAAAAATCTTTCTATTAGCTTTCTTCATATCAATGTTTCCATTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTAAAAATCTTTCTATTAGCTTTCTTCATATCAATGTTTCCATTT  895

seq1  GTGACAAAATAATACCAGTAGCATTTATAATTTAAGAGCTTTTTAAGTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAATAATACCAGTAGCATTTATAATTTAAGAGCTTTTTAAGTTA  945

seq1  ACATAATCTGTCAAGGATTTTTTTTAAAGAACTAAAAGTATACACTAATA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATCTGTCAAGGATTTTTTTTAAAGAACTAAAAGTATACACTAATA  995

seq1  AAAAGCACTCATTGGAGACTTTTAGAATGAACTATCTATCGCTGGAGCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACTCATTGGAGACTTTTAGAATGAACTATCTATCGCTGGAGCTA  1045

seq1  TCTATCGCTGATCATTCCAAAGAATAGTGTTCTTATATAGTTGTAATGTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCGCTGATCATTCCAAAGAATAGTGTTCTTATATAGTTGTAATGTT  1095

seq1  TGAATGTTGAATTC  1109
      ||||||||||||||
seq2  TGAATGTTGAATTC  1109