BAC Information

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BAC

Clone NameB6Ng01-224F01
Chromosome2 (Build37)
Map Location 140,833,999 - 141,006,528
singlet/doubletdoublet
Overlap genenone
Upstream geneTasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224F01.bB6Ng01-224F01.g
ACCGA038809GA038810
length1,080582
definitionB6Ng01-224F01.b B6Ng01-224F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,833,999 - 140,835,069)(141,005,947 - 141,006,528)
sequence
gaattccttatcatattgtaaatctgggttgccttgccgcacagggacag
tgtctagatcttgccaacattcattctctgcagttgaaactattgtcatg
tcaggagtgctctctcctcttttagcttatctcattggttagaactcatg
tagagagcaaaatgtctcctaaatacacacacacacacacacacacacac
acacacacacacacagtgtctgctactgaaagtaaagaaaccctgacatg
tctgaagaagaccagaagaattgcatccagacttgccagtccactcatta
aaattcttgccaagtgtattatgcagggcttcctcatttaggctgtaaat
tacattgcaaatttttctaggatgaggaagtttgtatttttttttttatt
tcataagcccacatgatacacacagctttcctcaaaaaaattttttgagg
tgttgggggtgtgtgctgtgttaaatatagggctcctttctgaaggaaag
tgcacgtggctcattttaacttctcctacaagcatttcagatgaagcaag
aaaggttcttctgtggatggaagaaaatagacatttccataagtggcagg
tgtctctaaagcagtgctttgtcctttccaaaatctgttccaagaacctg
aagcatcaacagaatttttctttactgacctagagaaaccactctcccct
gctgctgccacctattctggtcctctgcttttctgtaccctaatgttcat
gggtcagtatatgcatcaaaaccctcttatgcaggaaactctgagagaac
tgtctgtggcagacagtcagccagcactctgaggcagaatcctgggtgtc
agaggcctagggaacaaatgagtctattctgaagtttggcttggttgatg
ccacagaatgtgtgcttccgacctggctactgggacttgacttatgggga
taccaaagttgtttttccattttctggggagtggtgccttcttctttggt
tgccagccctgcagcagggtatcttttgagagtctctgagattgttaatg
ggcaggggtggggtagtctcctctgacatc

gaattctgtacaagagatgtactcttctttcctttgaagtgcattgctgg
gagagtaattgggtttgctagagatattccttagaactgcaaaagaaatc
tcttggctaagcatataatcaagtcttaaattttctttctttcttttttt
aaaaattaaatagctgcttgtaagaaagtggacgctaaataagcttatac
ctccaaggagggatagaaggatacatcgtgccttcactgatagaagaatg
ctcagcaagtctgggttaaaaattccaccagaagagctcatcacagtgaa
acatctcattacatgatataatcccttctagaaatatgttggtgcctctg
aaatgttacaatcaggataatcaggctgttatggatacaccaagttcaat
ttgatagagaagccaggctgggagcttcatgcccatgctcataggacatg
aggaagatcctgagcattcaaggttgacttaggcaaagaacaaaaccttg
tgtcacaaaaaaaaggaaggaaggaaggaaggaaggaaggaaggaagaaa
ggaaggaaggaaggaaggaaggaaggaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_140833999_140835069
seq2: B6Ng01-224F01.b_48_1127

seq1  GAATTCCTTATCATATTGTAAATCTGGGTTGCCTTGCCGCACAGGGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATCATATTGTAAATCTGGGTTGCCTTGCCGCACAGGGACAG  50

seq1  TGTCTAGATCTTGCCAACATTCATTCTCTGCAGTTGAAACTATTGTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGATCTTGCCAACATTCATTCTCTGCAGTTGAAACTATTGTCATG  100

seq1  TCAGGAGTGCTCTCTCCTCTTTTAGCTTATCTCATTGGTTAGAACTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTGCTCTCTCCTCTTTTAGCTTATCTCATTGGTTAGAACTCATG  150

seq1  TAGAGAGCAAAATGTCTCCTAAATACACACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCAAAATGTCTCCTAAATACACACACACACACACACACACACAC  200

seq1  ACACACACACACACAGTGTCTGCTACTGAAAGTAAAGAAACCCTGACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACAGTGTCTGCTACTGAAAGTAAAGAAACCCTGACATG  250

seq1  TCTGAAGAAGACCAGAAGAATTGCATCCAGACTTGCCAGTCCACTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAAGACCAGAAGAATTGCATCCAGACTTGCCAGTCCACTCATTA  300

seq1  AAATTCTTGCCAAGTGTATTATGCAGGGCTTCCTCATTTAGGCTGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTGCCAAGTGTATTATGCAGGGCTTCCTCATTTAGGCTGTAAAT  350

seq1  TACATTGCAAATTTTTCTAGGATGAGGAAGTTTGTATTTTTTTTTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGCAAATTTTTCTAGGATGAGGAAGTTTGTATTTTTTTTTTTATT  400

seq1  TCATAAGCCCACATGATACACACAGCTTTCCTCAAAAAAATTTTTTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGCCCACATGATACACACAGCTTTCCTCAAAAAAATTTTTTGAGG  450

seq1  TGTTGGGGGTGTGTGCTGTGTTAAATATAGGGCTCCTTTCTGAAGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGGGTGTGTGCTGTGTTAAATATAGGGCTCCTTTCTGAAGGAAAG  500

seq1  TGCACGTGGCTCATTTTAACTTCTCCTACAAGCATTTCAGATGAAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTGGCTCATTTTAACTTCTCCTACAAGCATTTCAGATGAAGCAAG  550

seq1  AAAGGTTCTTCTGTGGATGGAAGAAAATAGACATTTCCATAAGTGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCTTCTGTGGATGGAAGAAAATAGACATTTCCATAAGTGGCAGG  600

seq1  TGTCTCTAAAGCAGTGCTTTGTCCTTTCCAAAATCTGTTCCAAGAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAAAGCAGTGCTTTGTCCTTTCCAAAATCTGTTCCAAGAACCTG  650

seq1  AAGCATCAACAGAATTTTTCTTTACTGACCTAGAGAAACCACTCTCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCAACAGAATTTTTCTTTACTGACCTAGAGAAACCACTCTCCCCT  700

seq1  GCTGCTGCCACCTATTCTGGTCCTCTGCTTTTCTGTACCCTAATGTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCCACCTATTCTGGTCCTCTGCTTTTCTGTACCCTAATGTTCAT  750

seq1  GGGTCAGTATATGCATCAAAACCCTCTTATGCAGGAAACTCTGAGAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTATATGCATCAAAACCCTCTTATGCAGGAAACTCTGAGAGAAC  800

seq1  TGTCTGTGGCAGACAGTCAGCCAGCACTCTGAGGCAGAATCCTGGGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGGCAGACAGTCAGCCAGCACTCTGAGGCAGAATCCTGGGTGTC  850

seq1  AGAGGCCTAGGGAACAAATGAGTCTATTCTGAAG-TTGGCTTGGTTGATG  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAGGCCTAGGGAACAAATGAGTCTATTCTGAAGTTTGGCTTGGTTGATG  900

seq1  CCACAGAATGTGTGCTTCCGACCTGGCTACTGGGACTTGACTAATGGGGA  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCACAGAATGTGTGCTTCCGACCTGGCTACTGGGACTTGACTTATGGGGA  950

seq1  TACCAAAGTTG-TTTTCCA-TTTCT-GGGAGT-GTGCCT--CTCTTTGG-  992
      ||||||||||| ||||||| ||||| |||||| ||||||   ||||||| 
seq2  TACCAAAGTTGTTTTTCCATTTTCTGGGGAGTGGTGCCTTCTTCTTTGGT  1000

seq1  TGCCAGCCTTGCAGCAGGGTA-CCTTTGAGAGTCTCTGAGGATGTTAATG  1041
      |||||||| |||||||||||| | ||||||||||||||||  ||||||||
seq2  TGCCAGCCCTGCAGCAGGGTATCTTTTGAGAGTCTCTGAGATTGTTAATG  1050

seq1  GGCAGGGGTGGGGTAGTCTCCTCTGACATC  1071
      ||||||||||||||||||||||||||||||
seq2  GGCAGGGGTGGGGTAGTCTCCTCTGACATC  1080


seq1: chr2_141005947_141006528
seq2: B6Ng01-224F01.g_65_646 (reverse)

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTCCTTCCTTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTCCTTCCTTCCTT  50

seq1  CCTTCCTTCCTTCCTTCCTTTTTTTTGTGACACAAGGTTTTGTTCTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTCCTTTTTTTTGTGACACAAGGTTTTGTTCTTTGC  100

seq1  CTAAGTCAACCTTGAATGCTCAGGATCTTCCTCATGTCCTATGAGCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCAACCTTGAATGCTCAGGATCTTCCTCATGTCCTATGAGCATGG  150

seq1  GCATGAAGCTCCCAGCCTGGCTTCTCTATCAAATTGAACTTGGTGTATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAGCTCCCAGCCTGGCTTCTCTATCAAATTGAACTTGGTGTATCC  200

seq1  ATAACAGCCTGATTATCCTGATTGTAACATTTCAGAGGCACCAACATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCCTGATTATCCTGATTGTAACATTTCAGAGGCACCAACATATT  250

seq1  TCTAGAAGGGATTATATCATGTAATGAGATGTTTCACTGTGATGAGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGGGATTATATCATGTAATGAGATGTTTCACTGTGATGAGCTCT  300

seq1  TCTGGTGGAATTTTTAACCCAGACTTGCTGAGCATTCTTCTATCAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGAATTTTTAACCCAGACTTGCTGAGCATTCTTCTATCAGTGAA  350

seq1  GGCACGATGTATCCTTCTATCCCTCCTTGGAGGTATAAGCTTATTTAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGATGTATCCTTCTATCCCTCCTTGGAGGTATAAGCTTATTTAGCG  400

seq1  TCCACTTTCTTACAAGCAGCTATTTAATTTTTAAAAAAAGAAAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTCTTACAAGCAGCTATTTAATTTTTAAAAAAAGAAAGAAAGAA  450

seq1  AATTTAAGACTTGATTATATGCTTAGCCAAGAGATTTCTTTTGCAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGACTTGATTATATGCTTAGCCAAGAGATTTCTTTTGCAGTTCT  500

seq1  AAGGAATATCTCTAGCAAACCCAATTACTCTCCCAGCAATGCACTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATATCTCTAGCAAACCCAATTACTCTCCCAGCAATGCACTTCAAA  550

seq1  GGAAAGAAGAGTACATCTCTTGTACAGAATTC  582
      ||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGAGTACATCTCTTGTACAGAATTC  582


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