BAC Information

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BAC

Clone NameB6Ng01-224J08
Chromosome2 (Build37)
Map Location 29,049,223 - 29,219,445
singlet/doubletdoublet
Overlap geneNtng2, Crsp8
Upstream geneOlfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx
Downstream geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224J08.bB6Ng01-224J08.g
ACCGA039000GA039001
length793213
definitionB6Ng01-224J08.b B6Ng01-224J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,218,656 - 29,219,445)(29,049,223 - 29,049,434)
sequence
gaattcacatttggaaaggcagaaatggtaactgtaatcccagtgctgga
gaagattcctggggcttacttgccagccagtgggagaagctcaaaaagtg
aacagtgcctgagaaacaacaccctctggcctccacacaggggcacacat
gtacacatacaagaacacaaacaacacacaacacatgcgcgcgcacacga
gcacacactacacaactagtgaggcaaacaaagctcccttgggtagatca
ctggatggagaagcagatgggcagtcgggcaactggagaccccaggtaga
gtattgaattgggacaaaaggctagtggacacatgagcaagattaccctt
cagaactcccagcatctaaaggagatccaaatagactcaaatgaaaatac
agtcatccccataactatagctcagctttccatagtctcagttatccaca
atcagcagcagtctggaaatgttgaatagaaaattctagaagtaaataag
tcataagatttacattacatgctattctcggtaaaactgtggtggtggtg
gtgtgagaatggcccccataagctcttatgtttgaatacctggtccccgt
tggtggagctatttggggagtattggaggggaggccttgttagaggaggg
gtgcgggcactgacgtttcagaagactcccaccatttcattcccgcttgt
gttcctctctgcttcctgcttatggactgaccaagatgggaagctgggca
gctgtctgcgcttccttgctctgtcaccatgactctctgccgt
caagaattctccctcagttattttcctggggcttccacagcagagactct
ggatttgggggagttgtaggaaaggggtggggcacccctgtttggagatc
cacctaccaaatggtggccagcagcctggctgacggtaaaattgggggag
catacaaggaaagaacagactgggaagattggcccctatacctagtcttt
aaactcttttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_29218656_29219445
seq2: B6Ng01-224J08.b_49_841 (reverse)

seq1  ACGGCAGAGAGTCAATGGTGACAGAGCAAGGAAGCGGGGACAGCTG-CCA  49
      ||||||||||||| ||||||||||||||||||||||  |||||||| |||
seq2  ACGGCAGAGAGTC-ATGGTGACAGAGCAAGGAAGCGCAGACAGCTGCCCA  49

seq1  GCTT-CCATCTTGGTCCGTCCATAAGCAGGAAGCAGAGAGG-ACAC-AGC  96
      |||| ||||||||||| |||||||||||||||||||||||| |||| |||
seq2  GCTTCCCATCTTGGTCAGTCCATAAGCAGGAAGCAGAGAGGAACACAAGC  99

seq1  GGGAATGAAATGGTGGGAGTCTTCTGAAACGTCAGTGCCCGCACCCCTCC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAAATGGTGGGAGTCTTCTGAAACGTCAGTGCCCGCACCCCTCC  149

seq1  TCTAACAAGGCCTCCCCTCCAATACTCCCCAAATAGCTCCACCAACGGGG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAAGGCCTCCCCTCCAATACTCCCCAAATAGCTCCACCAACGGGG  199

seq1  ACCAGGTATTCAAACATAAGAGCTTATGGGGGCCATTCTCACACCACCAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTATTCAAACATAAGAGCTTATGGGGGCCATTCTCACACCACCAC  249

seq1  CACCACAGTTTTACCGAGAATAGCATGTAATGTAAATCTTATGACTTATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAGTTTTACCGAGAATAGCATGTAATGTAAATCTTATGACTTATT  299

seq1  TACTTCTAGAATTTTCTATTCAACATTTCCAGACTGCTGCTGATTGTGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTAGAATTTTCTATTCAACATTTCCAGACTGCTGCTGATTGTGGA  349

seq1  TAACTGAGACTATGGAAAGCTGAGCTATAGTTATGGGGATGACTGTATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGACTATGGAAAGCTGAGCTATAGTTATGGGGATGACTGTATTT  399

seq1  TCATTTGAGTCTATTTGGATCTCCTTTAGATGCTGGGAGTTCTGAAGGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAGTCTATTTGGATCTCCTTTAGATGCTGGGAGTTCTGAAGGGT  449

seq1  AATCTTGCTCATGTGTCCACTAGCCTTTTGTCCCAATTCAATACTCTACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCTCATGTGTCCACTAGCCTTTTGTCCCAATTCAATACTCTACC  499

seq1  TGGGGTCTCCAGTTGCCCGACTGCCCATCTGCTTCTCCATCCAGTGATCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTCCAGTTGCCCGACTGCCCATCTGCTTCTCCATCCAGTGATCT  549

seq1  ACCCAAGGGAGCTTTGTTTGCCTCACTAGTTGTGTAGTGTGTGCTCGTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGGGAGCTTTGTTTGCCTCACTAGTTGTGTAGTGTGTGCTCGTGT  599

seq1  GCGCGCGCATGTGTTGTGTGTTGTTTGTGTTCTTGTATGTGTACATGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCATGTGTTGTGTGTTGTTTGTGTTCTTGTATGTGTACATGTGT  649

seq1  GCCCCTGTGTGGAGGCCAGAGGGTGTTGTTTCTCAGGCACTGTTCACTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTGTGGAGGCCAGAGGGTGTTGTTTCTCAGGCACTGTTCACTTT  699

seq1  TTGAGCTTCTCCCACTGGCTGGCAAGTAAGCCCCAGGAATCTTCTCCAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTTCTCCCACTGGCTGGCAAGTAAGCCCCAGGAATCTTCTCCAGC  749

seq1  ACTGGGATTACAGTTACCATTTCTGCCTTTCCAAATGTGAATTC  790
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATTACAGTTACCATTTCTGCCTTTCCAAATGTGAATTC  793

seq1: chr2_29049223_29049434
seq2: B6Ng01-224J08.g_73_285

seq1  CAAGAATTCTCCCTCAGTTATTTTCCTGGGGCTTCCACAGCAGAGACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTCTCCCTCAGTTATTTTCCTGGGGCTTCCACAGCAGAGACTCT  50

seq1  GGATTTGGGGGAGTTGTAGGAAAGGGGTGGGGCACCCCTGTTTGGAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGGGGAGTTGTAGGAAAGGGGTGGGGCACCCCTGTTTGGAGATC  100

seq1  CACCTACCAGATGGTGGCCAGCAGCCTGGCTGACGGTAAAATTGGGGGAG  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACCAAATGGTGGCCAGCAGCCTGGCTGACGGTAAAATTGGGGGAG  150

seq1  CATACAAGGAAAGAACAGACTGGGAAGAGTGGCCCCAATACCGAGTCTTT  200
      |||||||||||||||||||||||||||| ||||||| ||||| |||||||
seq2  CATACAAGGAAAGAACAGACTGGGAAGATTGGCCCCTATACCTAGTCTTT  200

seq1  AAAC-CTTTTTTG  212
      |||| ||||||||
seq2  AAACTCTTTTTTG  213