BAC Information

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BAC

Clone NameB6Ng01-225B13
Chromosome2 (Build37)
Map Location 103,111,184 - 103,300,020
singlet/doubletdoublet
Overlap geneEhf, Elf5, Cat
Upstream geneTrim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
Downstream geneAbtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225B13.bB6Ng01-225B13.g
ACCGA039377GA039378
length1,113774
definitionB6Ng01-225B13.b B6Ng01-225B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,111,184 - 103,112,300)(103,299,251 - 103,300,020)
sequence
gaattcctaaatattctcccccagaaaatgcaagtgtgttattctaatgg
aatttggttagtcatttcagggatctctggctcattcagggggttcacaa
actctagattaaaagactagggaaattctacacacactcatacacacaca
cacatacacacacatgcacacacacacacacttgttcttgtcatcacatg
gaaaaataagcaattgggaaaaaagatgagtttctttcagatactcttct
cttgccaataggcaaaggaagccacaaaaaccctaccagccttagctcaa
aaaccttttgatctaggggctcatttaatacaactgcctctcttccaccc
ccctgtcctccccactgccacaaaataaaagctacctttgaagtagccct
gtggtcaggtgattcatctttataaaataatggttagctctacagaggtt
gtccagcctggctttctcttgtttccctccccagggaagggagacacttg
gggtcaaggtgtctgtgggtccaggtggaagctataagacaccccaagtt
tgctgtgtaagtggaagcctatgccttcggcctagctacttcgcaagaga
gcagagattagatggatttgcatatgagtcagctgtgagccattccttta
cgggatatacaaatttcggtgttctaatagaccgtgccaccctagctgga
ggctcaacaagtcagtagataaacacatcaagcctgagttggcatgactg
gcttcgggactgttgagcagatcagagcactggtggcagcagccatttta
tgggatgggcagataaactaaatcaaaacgaagctctcttccacgctggc
actatcaaggagaccatcagttgacacaagcctcaccttaacgcagcttc
aacttgcatgaaaacatagaaagatgtttaactgcaccctattttatagg
aacttgatatggcaaaagtaggacagatggtaaaggtctttgggggcatt
ctggcttccattcagtagaattcaaactattctggaagaactgattgtgc
atgggttgcattaatattttgcagactagacctccaaagaaatacacact
acagagctgtttt
gaattctatatcttcatctgaaggctgctagcagaatactggcttcccag
cagctaggatgagtcttaaagcccacacccacagtgacacacccactcca
agaaggccacaccttctaatagtgccactccctgggccgagcatacacaa
accatcacagtgtctaatgcaccttgaattgaatccaaagaagacttagc
tctaacaaatcagtctctattggctagagccaaagagctgtctggctact
ctgtccatttcacatatcaggactcgttctcagcccccacccccagcctt
tattgaaatgattgggcgatgctggggacagtgatctcctgggaatttaa
gaaatgagcaagtctattggcagaggaactcagtttccagggactagacc
tggcgatccgagacggccactgacgaccaggaaaatggtactttgctagc
cttacacagacagggccttgggtttgaatcctaatcctggaaaactcaca
acaaaactggcatcgagagtgtgtgggttcctctcagggctcctgggcac
ccggctctgctgttctcagggagtggggggggggttcacttccgctttcc
actgctggctgcttgttcccactgcactgcctcctcaccccccctttttt
tctcctctgcctctcaacttctgctgtttggccacgcccacacctggcct
actctcttttctgctgtttttttttccttagcttttctccttttgagcac
cccttcactctagtccccgtcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_103111184_103112300
seq2: B6Ng01-225B13.b_47_1159

seq1  GAATTCCTAAATATTCTCCCCCAGAAAATGCAAGTGTGTTATTCTAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATATTCTCCCCCAGAAAATGCAAGTGTGTTATTCTAATGG  50

seq1  AATTTGGTTAGTCATTTCAGGGATCTCTGGCTCATTCAGGGGGTTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTTAGTCATTTCAGGGATCTCTGGCTCATTCAGGGGGTTCACAA  100

seq1  ACTCTAGATTAAAAGACTAGGGAAATTCTACACACACTCATACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGATTAAAAGACTAGGGAAATTCTACACACACTCATACACACACA  150

seq1  CACATACACACACATGCACACACACACACACTTGTTCTTGTCATCACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACATGCACACACACACACACTTGTTCTTGTCATCACATG  200

seq1  GAAAAATAAGCAATTGGGAAAAAAGATGAGTTTCTTTCAGATACTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAAGCAATTGGGAAAAAAGATGAGTTTCTTTCAGATACTCTTCT  250

seq1  CTTGCCAATAGGCAAAGGAAGCCACAAAAACCCTACCAGCCTTAGCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAATAGGCAAAGGAAGCCACAAAAACCCTACCAGCCTTAGCTCAA  300

seq1  AAACCTTTTGATCTAGGGGCTCATTTAATACAACTGCCTCTCTTCCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTTGATCTAGGGGCTCATTTAATACAACTGCCTCTCTTCCACCC  350

seq1  CCCTGTCCTCCCCACTGCCACAAAATAAAAGCTACCTTTGAAGTAGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTCCCCACTGCCACAAAATAAAAGCTACCTTTGAAGTAGCCCT  400

seq1  GTGGTCAGGTGATTCATCTTTATAAAATAATGGTTAGCTCTACAGAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGGTGATTCATCTTTATAAAATAATGGTTAGCTCTACAGAGGTT  450

seq1  GTCCAGCCTGGCTTTCTCTTGTTTCCCTCCCCAGGGAAGGGAGACACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCCTGGCTTTCTCTTGTTTCCCTCCCCAGGGAAGGGAGACACTTG  500

seq1  GGGTCAAGGTGTCTGTGGGTCCAGGTGGAAGCTATAAGACACCCCAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAGGTGTCTGTGGGTCCAGGTGGAAGCTATAAGACACCCCAAGTT  550

seq1  TGCTGTGTAAGTGGAAGCCTATGCCTTCGGCCTAGCTACTTCGCAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTAAGTGGAAGCCTATGCCTTCGGCCTAGCTACTTCGCAAGAGA  600

seq1  GCAGAGATTAGATGGATTTGCATATGAGTCAGCTGTGAGCCATTCCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATTAGATGGATTTGCATATGAGTCAGCTGTGAGCCATTCCTTTA  650

seq1  CGGGATATACAAATTTCGGTGTTCTAATAGACCGTGCCACCCTAGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATATACAAATTTCGGTGTTCTAATAGACCGTGCCACCCTAGCTGGA  700

seq1  GGCTCAACAAGTCAGTAGATAAACACATCAAGCCTGAGTTGGCATGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAACAAGTCAGTAGATAAACACATCAAGCCTGAGTTGGCATGACTG  750

seq1  GCTTCGGGACTGTTGAGCAGATCAGAGCACTGGTGGCAGCAGCCATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGGGACTGTTGAGCAGATCAGAGCACTGGTGGCAGCAGCCATTTTA  800

seq1  TGGGATGGGCAGATAAACTAAATCAAAACGAAGCTCTCTTCCACGCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGGCAGATAAACTAAATCAAAACGAAGCTCTCTTCCACGCTGGC  850

seq1  ACTATCAAGGAGACCATCAGTTGACACAAGCCTCACCTTAACGCAGCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCAAGGAGACCATCAGTTGACACAAGCCTCACCTTAACGCAGCTTC  900

seq1  AACTTGCATGAAAACATAGAAAGATGTTTAACTGCACCCTATTTTATAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCATGAAAACATAGAAAGATGTTTAACTGCACCCTATTTTATAGG  950

seq1  AACTTGATATGGCAAAAGTAGGACAGATGGTAAAGGTCTTTGGGGGCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATATGGCAAAAGTAGGACAGATGGTAAAGGTCTTTGGGGGCATT  1000

seq1  CTGGC-TCCATCCAGTAGAAATCAAACTATTCTGGAAGGAACTGATTTGT  1049
      ||||| ||||| |||||||| |||||||||||||||| ||||||| ||||
seq2  CTGGCTTCCATTCAGTAGAATTCAAACTATTCTGGAA-GAACTGA-TTGT  1048

seq1  GCAT-GGTTGCAATTAATATTTTGCCAGACCTAAGACTCCAAAG-AATAC  1097
      |||| |||||| |||||||||||| |||| |||   |||||||| |||||
seq2  GCATGGGTTGC-ATTAATATTTTG-CAGA-CTAGACCTCCAAAGAAATAC  1095

seq1  ACCAACTACAGAGCTGTTTT  1117
      ||  ||||||||||||||||
seq2  AC--ACTACAGAGCTGTTTT  1113

seq1: chr2_103299251_103300020
seq2: B6Ng01-225B13.g_68_841 (reverse)

seq1  TATGAC-GGGACTAGAGTGAA-GGGTGCTCAAAAAGAGAAAAGCTAAGG-  47
      |||||| |||||||||||||| |||||||||||| |||||||||||||| 
seq2  TATGACGGGGACTAGAGTGAAGGGGTGCTCAAAAGGAGAAAAGCTAAGGA  50

seq1  AAAAAAAACAGCAGAAAAGAGAGTAGGCCAGGTGTGGGCGTGGCCAAACA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAGCAGAAAAGAGAGTAGGCCAGGTGTGGGCGTGGCCAAACA  100

seq1  GCAGAAGTTGAGAGGCAGAGGAGAAAAAAA-GGGGGGTGAGGAGGCAGTG  146
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCAGAAGTTGAGAGGCAGAGGAGAAAAAAAGGGGGGGTGAGGAGGCAGTG  150

seq1  CAGTGGGAACAAGCAGCCAGCAGTGGAAAGCGGAAGTGAACCCCCCCCCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAACAAGCAGCCAGCAGTGGAAAGCGGAAGTGAACCCCCCCCCC  200

seq1  ACTCCCTGAGAACAGCAGAGCCGGGTGCCCAGGAGCCCTGAGAGGAACCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTGAGAACAGCAGAGCCGGGTGCCCAGGAGCCCTGAGAGGAACCC  250

seq1  ACACACTCTCGATGCCAGTTTTGTTGTGAGTTTTCCAGGATTAGGATTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCTCGATGCCAGTTTTGTTGTGAGTTTTCCAGGATTAGGATTCA  300

seq1  AACCCAAGGCCCTGTCTGTGTAAGGCTAGCAAAGTACCATTTTCCTGGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAGGCCCTGTCTGTGTAAGGCTAGCAAAGTACCATTTTCCTGGTC  350

seq1  GTCAGTGGCCGTCTCGGATCGCCAGGTCTAGTCCCTGGAAACTGAGTTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGGCCGTCTCGGATCGCCAGGTCTAGTCCCTGGAAACTGAGTTCC  400

seq1  TCTGCCAATAGACTTGCTCATTTCTTAAATTCCCAGGAGATCACTGTCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAATAGACTTGCTCATTTCTTAAATTCCCAGGAGATCACTGTCCC  450

seq1  CAGCATCGCCCAATCATTTCAATAAAGGCTGGGGGTGGGGGCTGAGAACG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCGCCCAATCATTTCAATAAAGGCTGGGGGTGGGGGCTGAGAACG  500

seq1  AGTCCTGATATGTGAAATGGACAGAGTAGCCAGACAGCTCTTTGGCTCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGATATGTGAAATGGACAGAGTAGCCAGACAGCTCTTTGGCTCTA  550

seq1  GCCAATAGAGACTGATTTGTTAGAGCTAAGTCTTCTTTGGATTCAATTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAGAGACTGATTTGTTAGAGCTAAGTCTTCTTTGGATTCAATTCA  600

seq1  AGGTGCATTAGACACTGTGATGGTTTGTGTATGCTCGGCCCAGGGAGTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATTAGACACTGTGATGGTTTGTGTATGCTCGGCCCAGGGAGTGG  650

seq1  CACTATTAGAAGGTGTGGCCTTCTTGGAGTGGGTGTGTCACTGTGGGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTAGAAGGTGTGGCCTTCTTGGAGTGGGTGTGTCACTGTGGGTGT  700

seq1  GGGCTTTAAGACTCATCCTAGCTGCTGGGAAGCCAGTATTCTGCTAGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTAAGACTCATCCTAGCTGCTGGGAAGCCAGTATTCTGCTAGCAG  750

seq1  CCTTCAGATGAAGATATAGAATTC  770
      ||||||||||||||||||||||||
seq2  CCTTCAGATGAAGATATAGAATTC  774