BAC Information

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BAC

Clone NameB6Ng01-225C20
Chromosome2 (Build37)
Map Location 37,476,406 - 37,630,216
singlet/doubletdoublet
Overlap geneStrbp, LOC639491
Upstream geneOlfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik
Downstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225C20.bB6Ng01-225C20.g
ACCGA039437GA039438
length1,121221
definitionB6Ng01-225C20.b B6Ng01-225C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,476,406 - 37,477,123)(37,629,996 - 37,630,216)
sequence
ggtactcaactggaaacttcatcactgctagacagctttcatggtgatag
aaagtgctatctatattcatgaccagaggaaaaaagttaattatcaaagt
catccaactgcaagctataatatagtctgtgagctacaataacaactggc
ctgacaaaacatgcctcatagtacaactcctgcacaaacatcataggagt
aaacaacctctttttaaagtttgatcgacagcccactctacaaaatggac
cccacacctgacactgttaacaacaacgagaacctgtgactagacaggta
caagccctaacagaaaacttcctactatttattaatctgctaaatggaca
tatcagtaaaacaactcctaatgacttattgatatacccacagatcagtg
cattgttcaactctcaccacagaagctttttcttggaagacagcaattaa
cacacagatcgacaactgttcaacatgcaggcactttggaattctcagcc
ctacaacatcctatgatcagaactttctactccaggctaagagatttgta
tagaaaacagtgtggaaagattagagccaaagatagtggattgcaaaaca
ttgttccaactataataaggcaaatgcagatctgaaatcacagggattgt
ggcaaatgtaaataacaaaacaaaaacaaacaaaaaacaaaactaaacaa
aaaaacaggatcaagccacaaaaatctcagcatggaagagacatggtagg
catgcagtcccacccctatcagcaattgattgctgctagaagagggaaaa
acagctttctttaatagtgtcacacttgatacacagacaacactcctgtg
cagaccctatacctaggagtagtcagccaatagaaactggacttgctggg
aaaggagagagagggagacagggagaggggaagacaggaagtcttttggg
gttgaggggaacaaggagacaggaataaagaggtgggagagagaacaatc
atgagagaaagaaaccgtgaagttgggtgggttaagaaagtgagggaaga
tctgatctccagtgtgatggaatatgatccaaaactacattctatgaaat
tcctcaaagaattataaaaac
agggatacatctgagagcatggaactgactgctagtggttgacttggtag
aactaacacatcagagaggaatacagtggtgagggcatagataccaattc
aaatccccagcatccactttccagctctgtaagtcactaagtctcttaat
gtctctgagcctcattaacttccaagttaaaaaaaggtggaggaggagga
gaaggaggaggaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37476406_37477123
seq2: B6Ng01-225C20.b_456_1176

seq1  CATTGTTCAACTCTCACCACAGAAGCTTTTTCTTGGAAGACAGCAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCAACTCTCACCACAGAAGCTTTTTCTTGGAAGACAGCAATTAA  50

seq1  CACACAGATCGACAACTGTTCAACATGCAGGCACTTTGGAATTCTCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATCGACAACTGTTCAACATGCAGGCACTTTGGAATTCTCAGCC  100

seq1  CTACAACATCCTATGATCAGAACTTTCTACTCCAGGCTAAGAGATTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACATCCTATGATCAGAACTTTCTACTCCAGGCTAAGAGATTTGTA  150

seq1  TAGAAAACAGTGTGGAAAGATTAGAGCCAAAGATAGTGGATTGCAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACAGTGTGGAAAGATTAGAGCCAAAGATAGTGGATTGCAAAACA  200

seq1  TTGTTCCAACTATAATAAGGCAAATGCAGATCTGAAATCACAGGGATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCAACTATAATAAGGCAAATGCAGATCTGAAATCACAGGGATTGT  250

seq1  GGCAAATGTAAATAACAAAACAAAAACAAACAAAAAACAAAACTAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGTAAATAACAAAACAAAAACAAACAAAAAACAAAACTAAACAA  300

seq1  AAAAACAGGATCAAGCCACAAAAATCTCAGCATGGAAGAGACATGGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGGATCAAGCCACAAAAATCTCAGCATGGAAGAGACATGGTAGG  350

seq1  CATGCAGTCCCACCCCTATCAGCAATTGATTGCTGCTAGAAGAGGGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGTCCCACCCCTATCAGCAATTGATTGCTGCTAGAAGAGGGAAAA  400

seq1  ACAGCTTTCTTTAATAGTGTCACACTTGATACACAGACAACACTCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTCTTTAATAGTGTCACACTTGATACACAGACAACACTCCTGTG  450

seq1  CAGACCCTATACCTAGGAGTAGTCAGCCAATAGAAACTGGACTTGCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGACCCTATACCTAGGAGTAGTCAGCCAATAGAAACTGGACTTGCTGGG  500

seq1  AAAGGAGAGAGAGGGAGACAGGGAGAGGGGAAGACAGGAAGTCTTTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAGAGAGGGAGACAGGGAGAGGGGAAGACAGGAAGTCTTTTGGG  550

seq1  GTTGAGGGGAACAAGGAGACAGGAATAAAGAGGT-GGAGAGAGAACAAAC  599
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  GTTGAGGGGAACAAGGAGACAGGAATAAAGAGGTGGGAGAGAGAACAATC  600

seq1  ATGAGAGAAAGAAACCGTGAAGTTGGGTGGG-TAAGAAAGTGAGGGAAGA  648
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGAGAGAAAGAAACCGTGAAGTTGGGTGGGTTAAGAAAGTGAGGGAAGA  650

seq1  TCTGAATCTCCAGTGTGATGG-ATATGAT-CAAAACTACATTCTATGAAA  696
      |||| |||||||||||||||| ||||||| ||||||||||||||||||||
seq2  TCTG-ATCTCCAGTGTGATGGAATATGATCCAAAACTACATTCTATGAAA  699

seq1  TT-CTCAAAGAATTAATAAAAAC  718
      || ||||||||||| ||||||||
seq2  TTCCTCAAAGAATT-ATAAAAAC  721

seq1: chr2_37629996_37630216
seq2: B6Ng01-225C20.g_71_291 (reverse)

seq1  TCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCACCTTTTTTTAACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCACCTTTTTTTAACTTGG  50

seq1  AAGTTAATGAGGCTCAGAGACATTAAGAGACTTAGTGACTTACAGAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATGAGGCTCAGAGACATTAAGAGACTTAGTGACTTACAGAGCTG  100

seq1  GAAAGTGGATGCTGGGGATTTGAATTGGTATCTATGCCCTCACCACTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGATGCTGGGGATTTGAATTGGTATCTATGCCCTCACCACTGTA  150

seq1  TTCCTCTCTGATGTGTTAGTTCTACCAAGTCAACCACTAGCAGTCAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTGATGTGTTAGTTCTACCAAGTCAACCACTAGCAGTCAGTTC  200

seq1  CATGCTCTCAGATGTATCCCT  221
      |||||||||||||||||||||
seq2  CATGCTCTCAGATGTATCCCT  221