BAC Information

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BAC

Clone NameB6Ng01-225D07
Chromosome2 (Build37)
Map Location 118,163,418 - 118,321,375
singlet/doubletdoublet
Overlap geneGpr176, Eif2ak4, Srp14, LOC668859
Upstream geneRasgrp1, Thbs1, Fsip1, 1700054M17Rik
Downstream geneBmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225D07.bB6Ng01-225D07.g
ACCGA039459GA039460
length1,211317
definitionB6Ng01-225D07.b B6Ng01-225D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,163,418 - 118,164,614)(118,321,054 - 118,321,375)
sequence
gaattcaagcccaataaaactgtatttgcacacacgttttccttttgaac
agtaggttggttatcacgcttgctaagtgaaataggcaaaatgcatggtt
attcattgtcaacttgatgagatttagaatcactacaaggacacaccttt
ctatgggagatgtttccagaatggtttaataggctggggtccctatggga
tgaaaactaaatgagaccagctgagcaccagcatccacttgtctgcttcc
tgactgcgggtataaagtgaccatccatccacctcgtgcttcccgcagac
tcccagccagagtctccctcaccatcattcttacccactctgatagactg
gctcctcaaagatgaaataaagtaaccgctttctgacttggcttttctca
ggtatttgtcacagaaacaaaaataacaaatatctaagtgatgtttccat
ttgtgttgatgttaatgcgcttactgctgttgtttctatggaaaacccca
tgcacttacctactaagaactagccttcttggcttataatctagcagggg
gcaggtaaacactttaggaacagggtcaacagtgtcttctgtccctttga
gataatcataaaactcagtaggtagaggaggttccttcttccacttacag
agatatctttccctcagctgcctagttgactgcctcatctgtttagcatt
cactcatcctttttttgttaataatacaattagaagtctcattatgaatc
ccaattatggatctagcgacactgagaacacctaatgcaaatccatgttg
gtctctgttgacatttattttctccctactttcattcttgtttgatgtct
ccatctgcttagaaaaatctctttcatttacaattcctgttgccaggaaa
cataaaaacaagatggagaacagcatctaagagcatataaatgtactccc
cacaccccttcctatcttagaatttcattgctgtgagagacaccatgacc
aaagtaacttcttacaaaggaaacatgtatttggggctggcttacagttt
cagaaggttcagtccattatcatcatggtgggaagcatgggcagccatca
gcagacaaggtgcttggagaaggacctgaagtctacattcttgaattcca
aggcagccagagaactgttctttcagcaggtagccaggaaggaagagttc
tctctcttctg
actctgtagaccaggctgccctagaactcataggtccggaccccccccac
ccccccccccaccccaccccacccccgccaaccgagggctatacatcact
cttgactcttttaggcagtaaggtttttttgtttttgtttttgtttttga
ggaaagaggcccaggacttcttgagtgcctgatacaaaggagctgctcac
atagccctctgcctgcttggtagacaggaggggaaggttatttttggact
aggacaattgctgatttaaggaaggttgtgttcccctagaaggtgaaccc
cccccacctttctactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_118163418_118164614
seq2: B6Ng01-225D07.b_47_1257

seq1  GAATTCAAGCCCAATAAAACTGTATTTGCACACACGTTTTCCTTTTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCCAATAAAACTGTATTTGCACACACGTTTTCCTTTTGAAC  50

seq1  AGTAGGTTGGTTATCACGCTTGCTAAGTGAAATAGGCAAAATGCATGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTTGGTTATCACGCTTGCTAAGTGAAATAGGCAAAATGCATGGTT  100

seq1  ATTCATTGTCAACTTGATGAGATTTAGAATCACTACAAGGACACACCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGTCAACTTGATGAGATTTAGAATCACTACAAGGACACACCTTT  150

seq1  CTATGGGAGATGTTTCCAGAATGGTTTAATAGGCTGGGGTCCCTATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGAGATGTTTCCAGAATGGTTTAATAGGCTGGGGTCCCTATGGGA  200

seq1  TGAAAACTAAATGAGACCAGCTGAGCACCAGCATCCACTTGTCTGCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTAAATGAGACCAGCTGAGCACCAGCATCCACTTGTCTGCTTCC  250

seq1  TGACTGCGGGTATAAAGTGACCATCCATCCACCTCGTGCTTCCCGCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCGGGTATAAAGTGACCATCCATCCACCTCGTGCTTCCCGCAGAC  300

seq1  TCCCAGCCAGAGTCTCCCTCACCATCATTCTTACCCACTCTGATAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCAGAGTCTCCCTCACCATCATTCTTACCCACTCTGATAGACTG  350

seq1  GCTCCTCAAAGATGAAATAAAGTAACCGCTTTCTGACTTGGCTTTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCAAAGATGAAATAAAGTAACCGCTTTCTGACTTGGCTTTTCTCA  400

seq1  GGTATTTGTCACAGAAACAAAAATAACAAATATCTAAGTGATGTTTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGTCACAGAAACAAAAATAACAAATATCTAAGTGATGTTTCCAT  450

seq1  TTGTGTTGATGTTAATGCGCTTACTGCTGTTGTTTCTATGGAAAACCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGATGTTAATGCGCTTACTGCTGTTGTTTCTATGGAAAACCCCA  500

seq1  TGCACTTACCTACTAAGAACTAGCCTTCTTGGCTTATAATCTAGCAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTACCTACTAAGAACTAGCCTTCTTGGCTTATAATCTAGCAGGGG  550

seq1  GCAGGTAAACACTTTAGGAACAGGGTCAACAGTGTCTTCTGTCCCTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAAACACTTTAGGAACAGGGTCAACAGTGTCTTCTGTCCCTTTGA  600

seq1  GATAATCATAAAACTCAGTAGGTAGAGGAGGTTCCTTCTTCCACTTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCATAAAACTCAGTAGGTAGAGGAGGTTCCTTCTTCCACTTACAG  650

seq1  AGATATCTTTCCCTCAGCTGCCTAGTTGACTGCCTCATCTGTTTAGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCTTTCCCTCAGCTGCCTAGTTGACTGCCTCATCTGTTTAGCATT  700

seq1  CACTCATCCTTTTTTTGTTAATAATACAATTAGAAGTCTCATTATGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATCCTTTTTTTGTTAATAATACAATTAGAAGTCTCATTATGAATC  750

seq1  CCAATTATGGATCTAGCGACACTGAGAACACCTAATGCAAATCCATGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATGGATCTAGCGACACTGAGAACACCTAATGCAAATCCATGTTG  800

seq1  GTCTCTGTTGACATTTATTTTCTCCCTACTTTCATTCTTGTTTGATGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTTGACATTTATTTTCTCCCTACTTTCATTCTTGTTTGATGTCT  850

seq1  CCATCTGCTTAGAAAAATCTCTTTCA-TTACAATTCCTGTTGCCAGGAAA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCATCTGCTTAGAAAAATCTCTTTCATTTACAATTCCTGTTGCCAGGAAA  900

seq1  CATAAAAACAAGATGGAGAACAGCATCTAAGAGCATATAAATGTACTCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAACAAGATGGAGAACAGCATCTAAGAGCATATAAATGTACTCCC  950

seq1  CACACCCC-TCCTATCTTAGAATTTCATTGCTGTGAAGAGACACCATGAC  998
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  CACACCCCTTCCTATCTTAGAATTTCATTGCTGTG-AGAGACACCATGAC  999

seq1  CAAGGTAAC-TCTTACAAAGGAAACATGTATTTGGGGCTGGCTTACAGTT  1047
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAACTTCTTACAAAGGAAACATGTATTTGGGGCTGGCTTACAGTT  1049

seq1  TCAG-AGGTTCAGTCCATTATCATCATGGTGGGAAGCAT-GGCAG-CATC  1094
      |||| |||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TCAGAAGGTTCAGTCCATTATCATCATGGTGGGAAGCATGGGCAGCCATC  1099

seq1  AGGCAGACATGGTGC-TGGAGAAGGAGCTGAGAGTTCTACA-TCTTG-AT  1141
      | ||||||| ||||| |||||||||| |||| || |||||| ||||| ||
seq2  A-GCAGACAAGGTGCTTGGAGAAGGACCTGA-AG-TCTACATTCTTGAAT  1146

seq1  TCAAAGGCAGCCAGGAGACTGT--CTTCAGCAGGTAGCCAGGA--GGAGA  1187
      || |||||||||||   |||||   ||||||||||||||||||  | |||
seq2  TCCAAGGCAGCCAGAGAACTGTTCTTTCAGCAGGTAGCCAGGAAGGAAGA  1196

seq1  G-----TCTCTTCTG  1197
      |     |||||||||
seq2  GTTCTCTCTCTTCTG  1211

seq1: chr2_118321054_118321375
seq2: B6Ng01-225D07.g_66_388 (reverse)

seq1  AAGTAGAGAGGTGGAGGGGTTTCACCTTCTAGGGGTACTCAACCTTCCTT  50
      ||||||| |||||| |||| ||||||||||||||| || |||||||||||
seq2  AAGTAGAAAGGTGGGGGGGGTTCACCTTCTAGGGGAACACAACCTTCCTT  50

seq1  AAGTCAGCAGTTGTCCTCGTCC-AAAATAACCTTCCCCTCCTGTCTACCA  99
      || |||||| ||||||| |||| |||||||||||||||||||||||||||
seq2  AAATCAGCAATTGTCCTAGTCCAAAAATAACCTTCCCCTCCTGTCTACCA  100

seq1  AGCAGGCAGAGGGCTTTGTGAGCAGCTCCTTTGTCTCAGGCACTCAAGAA  149
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  AGCAGGCAGAGGGCTATGTGAGCAGCTCCTTTGTATCAGGCACTCAAGAA  150

seq1  GTCCTGGGCCTCTTTCCTCAAAAACAAAAACAAAAACAAAAAAACCTTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGCCTCTTTCCTCAAAAACAAAAACAAAAACAAAAAAACCTTAC  200

seq1  TGCCTAAAAGAGTCAAGAGTGATGTATAGCCCTCGGTTGGCGGGGGTGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAAAGAGTCAAGAGTGATGTATAGCCCTCGGTTGGCGGGGGTGGG  250

seq1  GTGGGGTGGGGGGGGGGGTGGGGGGGGTCCGGACCTATGAGTTCTAGGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGGGGGGGGGGGTGGGGGGGGTCCGGACCTATGAGTTCTAGGGC  300

seq1  AGCCTGGTCTACAGAGTGAATTC  322
      |||||||||||||||||||||||
seq2  AGCCTGGTCTACAGAGTGAATTC  323