BAC Information

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BAC

Clone NameB6Ng01-225D24
Chromosome2 (Build37)11 (Build37)
Map Location 60,951,109 - 60,952,26267,663,341 - 67,663,476
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBaz2b, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225D24.bB6Ng01-225D24.g
ACCGA039493GA039494
length1,153120
definitionB6Ng01-225D24.b B6Ng01-225D24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,951,109 - 60,952,262)(67,663,341 - 67,663,476)
sequence
gaattcaggctctacaaaaatgctttaaatgacctctgtgggggactcaa
acccaacaatgcaaacacatgactttatccttatgccttttcctcaaaaa
agaatgagaaaggcaggggggaaagtttgtctatttttagccatgaaaca
aggtcactaaatatattatgtcagctaatccaagccccattaaaaatggt
tctatatagtacacaaagtcttctttttgctatagctcaagagtgatatg
ggctctgtaactattattttcttggttggttacaactgtatgaatttttg
gttgacatttctgaaataaatatagctacaggagcactggtattctgatt
tagaaatctgactacattagaagaaaattaaccttttcaaaaagccactg
ttctaaggaatgattttaatcaaatgagttctaaatgctgtacctgcata
tagaatttctgcagcgattgcagctccccagtgatctgttttccaaagga
ggaaaataacacccaataaaccatgtgcaaagtaagtctcaaagttgtaa
aaaggagggaaactgagctgtctcttcgcgtggcatccggttcagaaatc
aaatcaactatttttatcagtattttggaaacacacgaagaagaatattg
tgggcagagattaggggccttatgtgccttaggctgatgtcacacacaca
cacacacacatacacacacacacacacacacacacatacaccacttttta
aaataaatctcttgtgtgaattcaggctctattgaaaagcttccagtaaa
ttatatgtttgttgttggaatcctccatgatactcttattattcatttat
tttcaatttgacagctacttctactgtgctaacacaaacatcagaacgag
gctagggcgcgagtgcagaggagtgccagactatcatccatagcagactt
caaatgccgagcgcccttgcatacatattaaacatatgaaatgaaaaata
acagtactcctgactttcaagctgtgaactcaagtgtcctctttaccagt
ctctaagcttagaacatttcaagtcctacctgaaccggttgcaagaagtt
caatcacaggaaatctaggacttctggtcactttagaatagtcagatgtg
gtg
tatatattcaatatagattgaaacatatatgtatatatgtatgtatgtat
atatatattatatatatataatatatataatatatatatatatatatcta
tatatataaaatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_60951109_60952262
seq2: B6Ng01-225D24.b_44_1196

seq1  GAATTCAGGCTCTACAAAAATGCTTTAAATGACCTCTGTGGGGGACTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTCTACAAAAATGCTTTAAATGACCTCTGTGGGGGACTCAA  50

seq1  ACCCAACAATGCAAACACATGACTTTATCCTTATGCCTTTTCCTCAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAATGCAAACACATGACTTTATCCTTATGCCTTTTCCTCAAAAA  100

seq1  AGAATGAGAAAGGCAGGGGGGAAAGTTTGTCTATTTTTAGCCATGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGAAAGGCAGGGGGGAAAGTTTGTCTATTTTTAGCCATGAAACA  150

seq1  AGGTCACTAAATATATTATGTCAGCTAATCCAAGCCCCATTAAAAATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTAAATATATTATGTCAGCTAATCCAAGCCCCATTAAAAATGGT  200

seq1  TCTATATAGTACACAAAGTCTTCTTTTTGCTATAGCTCAAGAGTGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATAGTACACAAAGTCTTCTTTTTGCTATAGCTCAAGAGTGATATG  250

seq1  GGCTCTGTAACTATTATTTTCTTGGTTGGTTACAACTGTATGAATTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTAACTATTATTTTCTTGGTTGGTTACAACTGTATGAATTTTTG  300

seq1  GTTGACATTTCTGAAATAAATATAGCTACAGGAGCACTGGTATTCTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATTTCTGAAATAAATATAGCTACAGGAGCACTGGTATTCTGATT  350

seq1  TAGAAATCTGACTACATTAGAAGAAAATTAACCTTTTCAAAAAGCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCTGACTACATTAGAAGAAAATTAACCTTTTCAAAAAGCCACTG  400

seq1  TTCTAAGGAATGATTTTAATCAAATGAGTTCTAAATGCTGTACCTGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGGAATGATTTTAATCAAATGAGTTCTAAATGCTGTACCTGCATA  450

seq1  TAGAATTTCTGCAGCGATTGCAGCTCCCCAGTGATCTGTTTTCCAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTCTGCAGCGATTGCAGCTCCCCAGTGATCTGTTTTCCAAAGGA  500

seq1  GGAAAATAACACCCAATAAACCATGTGCAAAGTAAGTCTCAAAGTTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAACACCCAATAAACCATGTGCAAAGTAAGTCTCAAAGTTGTAA  550

seq1  AAAGGAGGGAAACTGAGCTGTCTCTTCGCGTGGCATCCGGTTCAGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGGAAACTGAGCTGTCTCTTCGCGTGGCATCCGGTTCAGAAATC  600

seq1  AAATCAACTATTTTTATCAGTATTTTGGAAACACACGAAGAAGAATATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACTATTTTTATCAGTATTTTGGAAACACACGAAGAAGAATATTG  650

seq1  TGGGCAGAGATTAGGGGCCTTATGTGCCTTAGGCTGATGTCACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGAGATTAGGGGCCTTATGTGCCTTAGGCTGATGTCACACACACA  700

seq1  CACACACACATACACACACACACACACACACACACATACACCACTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATACACACACACACACACACACACACATACACCACTTTTTA  750

seq1  AAATAAATCTCTTGTGTGAATTCAGGCTCTATTGAAAAGCTTCCAGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTCTTGTGTGAATTCAGGCTCTATTGAAAAGCTTCCAGTAAA  800

seq1  TTATATGTTTGTTGTTGGAATCCTCCATGATACTCTTATTATTCATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTTTGTTGTTGGAATCCTCCATGATACTCTTATTATTCATTTAT  850

seq1  TTTCAATTTGACAGCTACTTCTACTGTGCTAACACAAACATCAGAACGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTGACAGCTACTTCTACTGTGCTAACACAAACATCAGAACGAG  900

seq1  GCTAGGGCGCGAGTGCAGAGGAGTGCCAGACTATCATCCATAGCAGACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGCGCGAGTGCAGAGGAGTGCCAGACTATCATCCATAGCAGACTT  950

seq1  CAAATGCCGAGCG-CCTTGCATACATATTAAACATATG-AATGAAAA--T  996
      ||||||||||||| |||||||||||||||||||||||| ||||||||   
seq2  CAAATGCCGAGCGCCCTTGCATACATATTAAACATATGAAATGAAAAATA  1000

seq1  ACAGTACTCCTGACTTTCAGGCTGTGAACTCAAGTGTCCTCTTTACCAGT  1046
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAGTACTCCTGACTTTCAAGCTGTGAACTCAAGTGTCCTCTTTACCAGT  1050

seq1  CTCTTAGCTTAAGGACATTCCAGTCCCAACCTGACCGGTTTGCAGGAGAG  1096
      |||| ||||| || ||||| ||   || |||||| | | ||||| || ||
seq2  CTCTAAGCTT-AGAACATTTCAAGTCCTACCTGAACCGGTTGCAAGA-AG  1098

seq1  TTC-ATCACAGGAAATCTAGGGACTCCTTGTCACTTTAGAATTAGGTCAA  1145
      ||| ||||||||||||||| ||||| || |||||||||||||   ||| |
seq2  TTCAATCACAGGAAATCTA-GGACTTCTGGTCACTTTAGAAT--AGTC-A  1144

seq1  GATGTGGTG  1154
      |||||||||
seq2  GATGTGGTG  1153

seq1: chr11_67663341_67663476
seq2: B6Ng01-225D24.g_93_188 (reverse)

seq1  ATATATATATATATATATATATATATATATACACACACACATACATATAC  50
      |||||||||| | |||||||||| ||||||          ||| ||||| 
seq2  ATATATATAT-TTTATATATATAGATATAT----------ATATATATAT  39

seq1  ATATATATATA-TATACATATACACATATATATATACACACACACACATA  99
      || |||||||| |||| ||||| | ||||||||||||| ||| ||| |||
seq2  AT-TATATATATTATATATATATA-ATATATATATACATACATACATATA  87

seq1  TATATATATACATACATACATACACACACACATATAT  136
      || ||||||                            
seq2  TACATATAT----------------------------  96