BAC Information

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BAC

Clone NameB6Ng01-225F11
Chromosome2 (Build37)
Map Location 170,604,318 - 170,715,237
singlet/doubletdoublet
Overlap geneDok5
Upstream geneTshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik
Downstream geneLOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225F11.bB6Ng01-225F11.g
ACCGA039561GA039562
length1,1521,151
definitionB6Ng01-225F11.b B6Ng01-225F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,714,086 - 170,715,237)(170,604,318 - 170,605,454)
sequence
gaattccaactgcacactattttctttatgtctttttctgatttaaaaaa
aaatgtgaaattctacatatctaaatgggaactcagaaatgctaaagaaa
agccatgaaaattcagggactcttgggccccccgttccaagggaatgact
tccctaactggacaacaccttcccctcaggtgtctctctccctggactag
ccttccgacgggtcctagctacctttcctttccacacacctgtgagccca
cccacacactagaactgttgccaaaagtggaagactggcctgggtcttca
ggtgaggccacccaaagttaggagcccatccccaaagctccttcccagag
gaagggcaaaggaggagattttaatcatggaagaattagaaagttacacc
ttctagggtgaggacactggaaaggaaaaacaaaagaagggcaagggctc
cattcttggtccactgccgagtgtgtgtgagatgtgttctgccagcataa
tgtaaaaccttggtcagggcaaccatgtttctccttccgggccaattgag
caagaaataaccaaccatattttattactgtttattgtcatttagggcca
gctaaatatcattttgtgtagcctcgaactcaggatggctgtttgacaaa
ggagcgggctggccatatttatgatggacggcttacccttctttagcctc
agctcaggaagggactgtctgtcctccgtttagcctttagcttgctggtc
agtctgcagtctccgctgttcttcttgttcgcttctgtgctgagcagcaa
gagtggttcaagcatgctggaacgttagcattcgaaagttttaagctgcc
tctgacactccacccttctccctaaccctagcttacctaccccaagagaa
cctcttactagaatattctctccctgcctctagtagacctttcccacagc
gtgggcagaaggaagcgcgcagtgagctcccagtgaaagcctctgcttct
tccagcactggctggggacagtcctcaggtgtgtggacatctaggcaact
tacactgcagccctaaaactgtctggaggtcaagaacgctgcccttcagc
gatcttctaactataaaagctatgattcaacaacaagttccaaccaggca
ag

gaattccacctgcctctgcttctgccttctcagcactagggttaaaggtg
tagcgccacgtagccatgcttaatgatagactggatgatacagaggaaaa
gggatgtttcattgcatttcagtgattcggaatctagacttgctttgccc
ctgttgtaatcacaccgtatatcagtattaataataatgaagcatgtgat
taagagatgaataggtgatccagtaaaataataattgttgttaagcattc
ttcttcctccaccctcctcctcctcctctaccctcctccaccctcttcct
ccaccctcttcctctgcccttctcctccaccctcctctcttcatcctcct
cctcctccactctcatcctgtaccctcttcctccaccctcctccttctct
tttctttctcatcctcctttatattctcctcgctctcttcttctttgcct
tttgttttttttgagatgtggtctcatatatctcagtcagtacttaaact
ttttatgtagcagaggatgtcttgaactgagggtctggcctctacctcgc
tacaattgcaggcatgtaccaggatccttgatggatttgatgctggagac
agcatccggggcttcatagatgctagactggcactctacccactgagccc
agcccctgagctgtatctcttaatactaaatttgtgatgcagaaaacaag
atcttttatattttgaagattactattcagttgactctacaagaaatgtg
gttgtttttcctacataaaagccaacagtagaagcaaatttgtattcttt
gatttactattgtaattctagataaaatattctcccctggatgctgatgg
ccatttgcagggcagcagtgagcacacacagtgaccaggctgttgcttct
ttgatggctgcctcattttcatctgttctctgagtaactcagtgaatttt
cctttttactgtcaaggaatgattcagtttccaaaaaaaaaaaaaaaaaa
aagggggggggggaagtcagagaagaaaaggaactagtttgccacgcgct
ggggagtgcttcattgtggcaaagtgcctttgcagactagggtgtgagcc
agattcctgttagccatggagagctaagccagatgcatgaactgtatcct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_170714086_170715237
seq2: B6Ng01-225F11.b_47_1198 (reverse)

seq1  CTTGCCTGGTTGGGAC-TGTTGTTGAATCAATAGCTTTTATAGTTAG-AG  48
      ||||||||||||| || |||||||||||| ||||||||||||||||| ||
seq2  CTTGCCTGGTTGGAACTTGTTGTTGAATC-ATAGCTTTTATAGTTAGAAG  49

seq1  ATCGCTG-AGGGCAGCGTCTTTGACCT-CAGACAGTTTTTAGGGGCTGCA  96
      ||||||| ||||||||||  ||||||| |||||||||||   ||||||||
seq2  ATCGCTGAAGGGCAGCGTTCTTGACCTCCAGACAGTTTT--AGGGCTGCA  97

seq1  GTGTAAGTTGCCCTAGATGTCCACACACCTGAGGACTGTCCCCAGCCAGT  146
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGTTG-CCTAGATGTCCACACACCTGAGGACTGTCCCCAGCCAGT  146

seq1  GCTGGAAGAAGCAGAGGCTTTCACTGGGAGCTCACTGCGCGCTTCCTTCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGAAGCAGAGGCTTTCACTGGGAGCTCACTGCGCGCTTCCTTCT  196

seq1  GCCCACGCTGTGGGAAAGGTCTACTAGAGGCAGGGAGAGAATATTCTAGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACGCTGTGGGAAAGGTCTACTAGAGGCAGGGAGAGAATATTCTAGT  246

seq1  AAGAGGTTCTCTTGGGGTAGGTAAGCTAGGGTTAAGGAGAAGGGTGGAGT  296
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGAGGTTCTCTTGGGGTAGGTAAGCTAGGGTTAGGGAGAAGGGTGGAGT  296

seq1  GTCAGAGGCAGCTTAAAACTTTCGAATGCTAACGTTCCAGCATGCTTGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGCAGCTTAAAACTTTCGAATGCTAACGTTCCAGCATGCTTGAA  346

seq1  CCACTCTTGCTGCTCAGCACAGAAGCGAACAAGAAGAACAGCGGAGACTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTGCTGCTCAGCACAGAAGCGAACAAGAAGAACAGCGGAGACTG  396

seq1  CAGACTGACCAGCAAGCTAAAGGCTAAACGGAGGACAGACAGTCCCTTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGACCAGCAAGCTAAAGGCTAAACGGAGGACAGACAGTCCCTTCC  446

seq1  TGAGCTGAGGCTAAAGAAGGGTAAGCCGTCCATCATAAATATGGCCAGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGAGGCTAAAGAAGGGTAAGCCGTCCATCATAAATATGGCCAGCC  496

seq1  CGCTCCTTTGTCAAACAGCCATCCTGAGTTCGAGGCTACACAAAATGATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCTTTGTCAAACAGCCATCCTGAGTTCGAGGCTACACAAAATGATA  546

seq1  TTTAGCTGGCCCTAAATGACAATAAACAGTAATAAAATATGGTTGGTTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGGCCCTAAATGACAATAAACAGTAATAAAATATGGTTGGTTAT  596

seq1  TTCTTGCTCAATTGGCCCGGAAGGAGAAACATGGTTGCCCTGACCAAGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTCAATTGGCCCGGAAGGAGAAACATGGTTGCCCTGACCAAGGT  646

seq1  TTTACATTATGCTGGCAGAACACATCTCACACACACTCGGCAGTGGACCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTATGCTGGCAGAACACATCTCACACACACTCGGCAGTGGACCA  696

seq1  AGAATGGAGCCCTTGCCCTTCTTTTGTTTTTCCTTTCCAGTGTCCTCACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAGCCCTTGCCCTTCTTTTGTTTTTCCTTTCCAGTGTCCTCACC  746

seq1  CTAGAAGGTGTAACTTTCTAATTCTTCCATGATTAAAATCTCCTCCTTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGTGTAACTTTCTAATTCTTCCATGATTAAAATCTCCTCCTTTG  796

seq1  CCCTTCCTCTGGGAAGGAGCTTTGGGGATGGGCTCCTAACTTTGGGTGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTGGGAAGGAGCTTTGGGGATGGGCTCCTAACTTTGGGTGGC  846

seq1  CTCACCTGAAGACCCAGGCCAGTCTTCCACTTTTGGCAACAGTTCTAGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGAAGACCCAGGCCAGTCTTCCACTTTTGGCAACAGTTCTAGTG  896

seq1  TGTGGGTGGGCTCACAGGTGTGTGGAAAGGAAAGGTAGCTAGGACCCGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGGCTCACAGGTGTGTGGAAAGGAAAGGTAGCTAGGACCCGTC  946

seq1  GGAAGGCTAGTCCAGGGAGAGAGACACCTGAGGGGAAGGTGTTGTCCAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTAGTCCAGGGAGAGAGACACCTGAGGGGAAGGTGTTGTCCAGT  996

seq1  TAGGGAAGTCATTCCCTTGGAACGGGGGGCCCAAGAGTCCCTGAATTTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGTCATTCCCTTGGAACGGGGGGCCCAAGAGTCCCTGAATTTTC  1046

seq1  ATGGCTTTTCTTTAGCATTTCTGAGTTCCCATTTAGATATGTAGAATTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTTCTTTAGCATTTCTGAGTTCCCATTTAGATATGTAGAATTTC  1096

seq1  ACATTTTTTTTTAAATCAGAAAAAGACATAAAGAAAATAGTGTGCAGTTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTTTTTAAATCAGAAAAAGACATAAAGAAAATAGTGTGCAGTTG  1146

seq1  GAATTC  1152
      ||||||
seq2  GAATTC  1152


seq1: chr2_170604318_170605454
seq2: B6Ng01-225F11.g_70_1220

seq1  GAATTCCACCTGCCTCTGCTTCTGCCTTCTCAGCACTAGGGTTAAAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTGCCTCTGCTTCTGCCTTCTCAGCACTAGGGTTAAAGGTG  50

seq1  TAGCGCCACGTAGCCATGCTTAATGATAGACTGGATGATACAGAGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCCACGTAGCCATGCTTAATGATAGACTGGATGATACAGAGGAAAA  100

seq1  GGGATGTTTCATTGCATTTCAGTGATTCGGAATCTAGACTTGCTTTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTTTCATTGCATTTCAGTGATTCGGAATCTAGACTTGCTTTGCCC  150

seq1  CTGTTGTAATCACACCGTATATCAGTATTAATAATAATGAAGCATGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTAATCACACCGTATATCAGTATTAATAATAATGAAGCATGTGAT  200

seq1  TAAGAGATGAATAGGTGATCCAGTAAAATAATAATTGTTGTTAAGCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATGAATAGGTGATCCAGTAAAATAATAATTGTTGTTAAGCATTC  250

seq1  TTCTTCCTCCACCCTCCTCCTCCTCCTCTACCCTCCTCCACCCTCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCCACCCTCCTCCTCCTCCTCTACCCTCCTCCACCCTCTTCCT  300

seq1  CCACCCTCTTCCTCTGCCCTTCTCCTCCACCCTCCTCTCTTCATCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCTTCCTCTGCCCTTCTCCTCCACCCTCCTCTCTTCATCCTCCT  350

seq1  CCTCCTCCACTCTCATCCTGTACCCTCTTCCTCCACCCTCCTCCTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCACTCTCATCCTGTACCCTCTTCCTCCACCCTCCTCCTTCTCT  400

seq1  TTTCTTTCTCATCCTCCTTTATATTCTCCTCGCTCTCTTCTTCTTTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTCATCCTCCTTTATATTCTCCTCGCTCTCTTCTTCTTTGCCT  450

seq1  TTTGTTTTTTTTGAGATGTGGTCTCATATATCTCAGTCAGTACTTAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTGAGATGTGGTCTCATATATCTCAGTCAGTACTTAAACT  500

seq1  TTTTATGTAGCAGAGGATGTCTTGAACTGAGGGTCTGGCCTCTACCTCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTAGCAGAGGATGTCTTGAACTGAGGGTCTGGCCTCTACCTCGC  550

seq1  TACAATTGCAGGCATGTACCAGGATCCTTGATGGATTTGATGCTGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTGCAGGCATGTACCAGGATCCTTGATGGATTTGATGCTGGAGAC  600

seq1  AGCATCCGGGGCTTCATAGATGCTAGACTGGCACTCTACCCACTGAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCGGGGCTTCATAGATGCTAGACTGGCACTCTACCCACTGAGCCC  650

seq1  AGCCCCTGAGCTGTATCTCTTAATACTAAATTTGTGATGCAGAAAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGAGCTGTATCTCTTAATACTAAATTTGTGATGCAGAAAACAAG  700

seq1  ATC-TTTATATTTTGAAGATTACTATTCAGTTGACTCTACAAGAAATGTG  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATATTTTGAAGATTACTATTCAGTTGACTCTACAAGAAATGTG  750

seq1  GTTGTTTTTCCTACATAAAAGCCAACAGTAGAAGCAAA-TTGTATTCTTT  798
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTGTTTTTCCTACATAAAAGCCAACAGTAGAAGCAAATTTGTATTCTTT  800

seq1  GA-TTACTATTGTAATTCTAGATAAAATATTCTCCCCTGGATGCTGATGG  847
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTATTGTAATTCTAGATAAAATATTCTCCCCTGGATGCTGATGG  850

seq1  CCATTTGCA-GGCAGCAGTGAGCACACACAGTGACCAGGCTGTTGCTTCT  896
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGCAGGGCAGCAGTGAGCACACACAGTGACCAGGCTGTTGCTTCT  900

seq1  TTGATGGCTGCCTCA-TTTCATCTGTTCTCTGAGTAACTCAGTGAAATTT  945
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  TTGATGGCTGCCTCATTTTCATCTGTTCTCTGAGTAACTCAGTGAATTTT  950

seq1  CC-TTTTACTGTC-AGGAATGATTCAGTTTCCAAAAAAAAAAAAAAAAA-  992
      || |||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  CCTTTTTACTGTCAAGGAATGATTCAGTTTCCAAAAAAAAAAAAAAAAAA  1000

seq1  ---GGGGGGGGGGATG-CAGAG-AGAAAAGG-ACCAGTTTGC--AGGGCT  1034
         ||||||||||| | ||||| |||||||| || |||||||   | |||
seq2  AAGGGGGGGGGGGAAGTCAGAGAAGAAAAGGAACTAGTTTGCCACGCGCT  1050

seq1  GGGGAGGTGCTTCA-TGTGGCAAAGTGC--TTGCAGGACAGGGGTGAG-G  1080
      ||||| |||||||| |||||||||||||  ||||| |||  ||||| | |
seq2  GGGGA-GTGCTTCATTGTGGCAAAGTGCCTTTGCA-GACTAGGGTGTGAG  1098

seq1  CCAGATCCCTGGTAGCCATGGAGAAGCTAAGCCCAGTTGCATGAATCTGT  1130
      |||||| |||| ||||||||||| ||||||| |||| |||||||| ||||
seq2  CCAGATTCCTGTTAGCCATGGAG-AGCTAAG-CCAGATGCATGAA-CTGT  1145

seq1  AATCCTG  1137
       ||||||
seq2  -ATCCTG  1151


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