BAC Information

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BAC

Clone NameB6Ng01-225P01
Chromosome2 (Build37)
Map Location 46,898,787 - 47,043,115
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225P01.bB6Ng01-225P01.g
ACCGA040008GA040009
length1,0761,122
definitionB6Ng01-225P01.b B6Ng01-225P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,042,032 - 47,043,115)(46,898,787 - 46,899,916)
sequence
gaattcacactgttgcccgtcttgctacatagtgaagtctgcccttaacc
ttctgatccccttactcatcatactctctaaagggtgagattggaggcat
gtgactctaggttgggctgggcaatttgcatttaaaaatgatgactcatg
cctcacatactatacttttatgacttttaacatacagtaacatgagacct
tctctaaactttaagtacacaaatgagtttctgtaaatggtaattaatac
agtttatattttgtttagtggtatggcattttataaaatatataaaacta
tttttctaatttacataatacctgtcaatatattcctgaagtttaattgt
ttaactgtaaatctttattctcctggttgaagaggactactacattatat
cttttaaaactacatacctgcctatatgaaagagagccacattcaattaa
gggaatccctgaccattaagaatactgcatagtcatgaaacaaaatttct
gctcatgtcctgtaggtatagaaactggtcacatttttctcaccctaaaa
aggtctcagccaattactatataacaaaaggcagaataccaagaaaaaaa
aaaacataaatgagttcataaattaaagtcatacataataggggaacctt
aaaattggaaacaaagtgatagattgaaaactgtctatatgtatgcctcg
aatcaatatgaaatgcacaagcatgaagaaatgtgattggatggatggca
tgtgatgtaatcgtggatataggctaggtgtgaaaatgcaacaatgcctg
cattctcaggtcattcaaatcctttctgcatagcattctttattcctctt
ctgaaatgtgaattttatgacctactattacattaggtatgctaaagaat
tttctatgagaagctcttacacagaagggtgagaaacattagataaatat
tttaagagctaaatgctaacttgggagaatgtatacaagattttatggca
tcttgaaagaacatgaatctgcttgttgtacctaggaaaaatgggtacag
acgatagaaatcagaaaactacttgt

gaattcttatgagctttgctttatcctttatggttattttctgctctgtc
ttgttcatgggcactgtccattgtcctcttacagctgttagaggtagagg
aatgaaaggatgctctggaccttgcatagagcccacctgagtagagctgg
ctagaatgttggcttcttatactggcatcaagtgttagtcagacaaatat
tcactacctggcttaatataaaacatagttaaggagtgaagttccagttt
aatcatatgcagtgaaaattgtattggtccccaccaaattcaaacagtac
agagaaaaatagttttaattaataaatatcagaaatttaaatcagtactg
agaatgactctgctaaaatatatgcagatatacagttaaatatctcattc
acatcatgtgaacagatttggaaattacaatttctgaaattattttaagg
aaaagtacttaaagaggtgaaatcaaacacaggattgactgttttacgtc
tgaaatttgactcatttatgaagtatgttcaaatatatgaaaactaatgt
tacggtgagtttcagcatgcatcagagcctggcttttttttttttccatg
atcattttttcctaaggaagtactatatgcggctcagcaaaacatcatgt
gaatccatataacatgacacaaccagaaatttctttcaatgcctccctcc
tcagtgttcatcatgcttcactgagaaattactcctgactccaaagcaaa
gcagtttccagctaatgatgcaagcacaacctgcctgtcttagactttta
gaccagcaaaaatgtgacctttctatatagaataattaccagcctcttat
gtttcatgtgcctcagttttccaatcaaaattggcattagtgttcttttt
attttaactttccgtttcccttcttggagtttatagagtcaaagatattc
tcttgaaagatatgggaccacaaatactaaacattgcataatctcaattc
ataccacccagcaatatcaattttcacagcttagttggacctaccataat
tgcaaatcttcactatagaaataccagttaagcttacattagatgttttg
gacctctatgacattctgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_47042032_47043115
seq2: B6Ng01-225P01.b_44_1119 (reverse)

seq1  ACAAGTAGTTTTCTGATTTCTATCCTTCTGGTTACCCATTTTTCCTAAGG  50
      ||||||||||||||||||||||| | ||||  |||||||||||||| |||
seq2  ACAAGTAGTTTTCTGATTTCTAT-CGTCTG--TACCCATTTTTCCT-AGG  46

seq1  TACAAACAAAGCAGAATTCATTGTCTTTCAAGATGCCATAAAATCTTGTA  100
      |||||   |||||| ||||||  |||||||||||||||||||||||||||
seq2  TACAA--CAAGCAG-ATTCATGTTCTTTCAAGATGCCATAAAATCTTGTA  93

seq1  TAACATTCTCCCAAGTTAGCATTTAGCTCTTAAAATATTTATCTAATGTT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ACATTCTCCCAAGTTAGCATTTAGCTCTTAAAATATTTATCTAATGTT  142

seq1  TCTCACCCTTCTGTGTAAGAGCTTCTCATAGAAAATTCTTTAGCATACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCTTCTGTGTAAGAGCTTCTCATAGAAAATTCTTTAGCATACCT  192

seq1  AATGTAATAGTAGGTCATAAAATTCACATTTCAGAAGAGGAATAAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATAGTAGGTCATAAAATTCACATTTCAGAAGAGGAATAAAGAAT  242

seq1  GCTATGCAGAAAGGATTTGAATGACCTGAGAATGCAGGCATTGTTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCAGAAAGGATTTGAATGACCTGAGAATGCAGGCATTGTTGCATT  292

seq1  TTCACACCTAGCCTATATCCACGATTACATCACATGCCATCCATCCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTAGCCTATATCCACGATTACATCACATGCCATCCATCCAATC  342

seq1  ACATTTCTTCATGCTTGTGCATTTCATATTGATTCGAGGCATACATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTTCATGCTTGTGCATTTCATATTGATTCGAGGCATACATATAG  392

seq1  ACAGTTTTCAATCTATCACTTTGTTTCCAATTTTAAGGTTCCCCTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTCAATCTATCACTTTGTTTCCAATTTTAAGGTTCCCCTATTAT  442

seq1  GTATGACTTTAATTTATGAACTCATTTATGTTTTTTTTTTTCTTGGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACTTTAATTTATGAACTCATTTATGTTTTTTTTTTTCTTGGTATT  492

seq1  CTGCCTTTTGTTATATAGTAATTGGCTGAGACCTTTTTAGGGTGAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTGTTATATAGTAATTGGCTGAGACCTTTTTAGGGTGAGAAAA  542

seq1  ATGTGACCAGTTTCTATACCTACAGGACATGAGCAGAAATTTTGTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCAGTTTCTATACCTACAGGACATGAGCAGAAATTTTGTTTCAT  592

seq1  GACTATGCAGTATTCTTAATGGTCAGGGATTCCCTTAATTGAATGTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGCAGTATTCTTAATGGTCAGGGATTCCCTTAATTGAATGTGGCT  642

seq1  CTCTTTCATATAGGCAGGTATGTAGTTTTAAAAGATATAATGTAGTAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCATATAGGCAGGTATGTAGTTTTAAAAGATATAATGTAGTAGTC  692

seq1  CTCTTCAACCAGGAGAATAAAGATTTACAGTTAAACAATTAAACTTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAACCAGGAGAATAAAGATTTACAGTTAAACAATTAAACTTCAGG  742

seq1  AATATATTGACAGGTATTATGTAAATTAGAAAAATAGTTTTATATATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTGACAGGTATTATGTAAATTAGAAAAATAGTTTTATATATTTT  792

seq1  ATAAAATGCCATACCACTAAACAAAATATAAACTGTATTAATTACCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGCCATACCACTAAACAAAATATAAACTGTATTAATTACCATTT  842

seq1  ACAGAAACTCATTTGTGTACTTAAAGTTTAGAGAAGGTCTCATGTTACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACTCATTTGTGTACTTAAAGTTTAGAGAAGGTCTCATGTTACTG  892

seq1  TATGTTAAAAGTCATAAAAGTATAGTATGTGAGGCATGAGTCATCATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAAAAGTCATAAAAGTATAGTATGTGAGGCATGAGTCATCATTTT  942

seq1  TAAATGCAAATTGCCCAGCCCAACCTAGAGTCACATGCCTCCAATCTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAAATTGCCCAGCCCAACCTAGAGTCACATGCCTCCAATCTCAC  992

seq1  CCTTTAGAGAGTATGATGAGTAAGGGGATCAGAAGGTTAAGGGCAGACTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGAGAGTATGATGAGTAAGGGGATCAGAAGGTTAAGGGCAGACTT  1042

seq1  CACTATGTAGCAAGACGGGCAACAGTGTGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  CACTATGTAGCAAGACGGGCAACAGTGTGAATTC  1076


seq1: chr2_46898787_46899916
seq2: B6Ng01-225P01.g_66_1187

seq1  GAATTCTTATGAGCTTTGCTTTATCCTTTATGGTTATTTTCTGCTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGAGCTTTGCTTTATCCTTTATGGTTATTTTCTGCTCTGTC  50

seq1  TTGTTCATGGGCACTGTCCATTGTCCTCTTACAGCTGTTAGAGGTAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATGGGCACTGTCCATTGTCCTCTTACAGCTGTTAGAGGTAGAGG  100

seq1  AATGAAAGGATGCTCTGGACCTTGCATAGAGCCCACCTGAGTAGAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGGATGCTCTGGACCTTGCATAGAGCCCACCTGAGTAGAGCTGG  150

seq1  CTAGAATGTTGGCTTCTTATACTGGCATCAAGTGTTAGTCAGACAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATGTTGGCTTCTTATACTGGCATCAAGTGTTAGTCAGACAAATAT  200

seq1  TCACTACCTGGCTTAATATAAAACATAGTTAAGGAGTGAAGTTCCAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACCTGGCTTAATATAAAACATAGTTAAGGAGTGAAGTTCCAGTTT  250

seq1  AATCATATGCAGTGAAAATTGTATTGGTCCCCACCAAATTCAAACAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATGCAGTGAAAATTGTATTGGTCCCCACCAAATTCAAACAGTAC  300

seq1  AGAGAAAAATAGTTTTAATTAATAAATATCAGAAATTTAAATCAGTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAATAGTTTTAATTAATAAATATCAGAAATTTAAATCAGTACTG  350

seq1  AGAATGACTCTGCTAAAATATATGCAGATATACAGTTAAATATCTCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACTCTGCTAAAATATATGCAGATATACAGTTAAATATCTCATTC  400

seq1  ACATCATGTGAACAGATTTGGAAATTACAATTTCTGAAATTATTTTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGTGAACAGATTTGGAAATTACAATTTCTGAAATTATTTTAAGG  450

seq1  AAAAGTACTTAAAGAGGTGAAATCAAACACAGGATTGACTGTTTTACGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACTTAAAGAGGTGAAATCAAACACAGGATTGACTGTTTTACGTC  500

seq1  TGAAATTTGACTCATTTATGAAGTATGTTCAAATATATGAAAACTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTGACTCATTTATGAAGTATGTTCAAATATATGAAAACTAATGT  550

seq1  TACGGTGAGTTTCAGCATGCATCAGAGCCTGGCTTTTTTTTTTTTCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTGAGTTTCAGCATGCATCAGAGCCTGGCTTTTTTTTTTTTCCATG  600

seq1  ATCATTTTTTCCTAAGGAAGTACTATATGCGGCTCAGCAAAACATCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTTCCTAAGGAAGTACTATATGCGGCTCAGCAAAACATCATGT  650

seq1  GAATCCATATAACATGACACAACCAGAAATTTCTTTCAATGCCTCCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATATAACATGACACAACCAGAAATTTCTTTCAATGCCTCCCTCC  700

seq1  TCAGTGTTCATCATGCTTCACTGAGAAATTACTCCTGACTCCAAAGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTCATCATGCTTCACTGAGAAATTACTCCTGACTCCAAAGCAAA  750

seq1  GCAGTTTCCAGCTAATGATGCAAGCACAACCTGCCTGTCTTAGACTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTCCAGCTAATGATGCAAGCACAACCTGCCTGTCTTAGACTTTTA  800

seq1  GACCAGCAAAAATGTGACCTTTCTATATAGAATAATTACCAGCCTCTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCAAAAATGTGACCTTTCTATATAGAATAATTACCAGCCTCTTAT  850

seq1  GTTTCATGTGCCTCAGTTTTCCAATCAAAATTGGCATTAGTGTTCTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGTGCCTCAGTTTTCCAATCAAAATTGGCATTAGTGTTCTTTTT  900

seq1  ATTTTAACTTT-CGTTTCCTTTCTTTGGAG-TTATAGAGTCAAAGATATT  948
      ||||||||||| ||||||| ||| |||||| |||||||||||||||||||
seq2  ATTTTAACTTTCCGTTTCCCTTC-TTGGAGTTTATAGAGTCAAAGATATT  949

seq1  CTCTTGAAAGATAATGGGACCACAAATACTAAACA-TGCAT-ATCTCAAA  996
      |||||||||||| |||||||||||||||||||||| ||||| ||||||| 
seq2  CTCTTGAAAGAT-ATGGGACCACAAATACTAAACATTGCATAATCTCAAT  998

seq1  TCAATACCACCCAACCAATATTCATTTTCACAGCCTAGTTGGACCTACCA  1046
      || ||||||||| | ||||||  ||||||||||| |||||||||||||||
seq2  TC-ATACCACCC-AGCAATATCAATTTTCACAGCTTAGTTGGACCTACCA  1046

seq1  TTATTTGGAAAATC-TCAACATAGAAATAACAGTTTTAGCTTTTAATATT  1095
      | |||  | ||||| |||  ||||||||| ||| || |||||   | |||
seq2  TAATT--GCAAATCTTCACTATAGAAATACCAG-TTAAGCTT---ACATT  1090

seq1  AGATGTTTTTGACCTTCTATATGACATTCTGAGTG  1130
      ||||||||| |||   || ||||||||||||||||
seq2  AGATGTTTTGGAC---CTCTATGACATTCTGAGTG  1122


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