BAC Information

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BAC

Clone NameB6Ng01-226F02
Chromosome2 (Build37)
Map Location 104,398,573 - 104,578,019
singlet/doubletdoublet
Overlap geneLOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7
Upstream geneAbtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735
Downstream geneQser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226F02.bB6Ng01-226F02.g
ACCGA040290GA040291
length1,0401,092
definitionB6Ng01-226F02.b B6Ng01-226F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,398,573 - 104,399,609)(104,576,930 - 104,578,019)
sequence
gaattctctcactgtgacagccttggttctctatctgtctgagtcatttc
cactcccgtgaaaaacccctcacccatattcctgaacataagcctagtaa
agctttattggttcacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
gaaaaggaaaggaaaggaaagaaaagaaaacaaaatcgatttcagtaaaa
aataaaataataaataaaagcaaacgctttctttcgtaagtagccttagt
catagtgttttatatcagcaattaaatagtcactaatgcaaaagccttaa
tggattttgtggctataaaaggcttgacattaaagtgtcctgaagagggg
ggtttgtcttcagagaagactcagtcatccttgagggttttccctgtgct
gttgggatgttttccctcagcttaaaccaaaaacagtcttcaaacaaaca
aacaaaaaccaaaaaacctaccacgcccaaggcaacttacaaaagaaaga
gtttacttatttattttccttgtattgagatagactttttttttttttct
ctcacattacatatgttgtggatggctctgtgctgcctgtattttatgtt
aattctgctcccccgggagagactgcctggaatgaggaatgagttatctg
cacaggtggcttcttgtgaaccaatcccttaaagaataaaggagccaatc
actgggtgagtaggcgggacttccggattggtcagaggaagagaggaagc
aggagagagttttaggtcttttggaatggggacagcatatatgtaagatg
tagctgctagagtttcccggtatcatggcggatgtgtaaggattcgccca
ccagaggaatcagattttaataaggcttacaagattaggttttagtttgt
tgtgcccagagattgagttaccatttgttctgaactaagtttgtgttggc
tttcccttcacacagtgggggcggctcatcctgggttcaagaaagaaagg
tatcctgttaaagcatgggtgtgctaatgtgcaaccaaag
gaattcaaacttgctgcagctacaatagcaagtttgagaccaaactgggt
cataaggcagtgtcattaaaaacaacaacaacaacccaacaacaacaaaa
actgaacaaaaaaaaggagaccataatgttaagagctctaggtttaatgt
gtccccatgttttctttcctatagatccatcattctgtttgatattcaat
gtgtttgtttctcagggaagcaagaacaatttcagtctttaaattcttat
aattagcagtgtagacctgagaacaagcttaactatattattcaactgct
atagtggttggtaaaagaaccaagatacagagatgaaatcttttgaccag
acctactgtagcttagttttagattcttagataatttaaatttttaaatt
aatttttattttatatgcatggttgttttacgtgcacgtaagtctgcatc
atgtatgtgtggaaattggagtgtcgggtccctcccctggaattggattt
atagttgtaagtggccatgtagttgctacttgcaaacccaagtcctctgg
aagaatagtcagtgctcttcacacagtcctggtattttagaacaccattg
accaaatggaaaatagcttcaagatgaagagtttatttattctgatttta
ttgatttgatttttgagagagggtctcactgtagctttggctgcactgga
ttggcctgcctcttcctctgcccactggggggccaggattaaagatagtc
acagcccctggcttcaagatgtagacttttcaggagttgtccagcttcta
tgctagcgaggctgtaggacaatctgaagcttcagctgcgactgctcgct
agcctgagaaacagtcattgtgcactctctggtttcttgaattctgtcta
gaaattacagaaagtccggttttatttggctagcatgcttttcggtctta
atggggtgataggatagatcctgcgcagcactgggggatctgtagtcaaa
cctggtatcctggtatgagctttgacatattgacctgtcagtcctcgtca
ctggtgggatcgctgtgtctgtgtgaaccttgagcctttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_104398573_104399609
seq2: B6Ng01-226F02.b_46_1085

seq1  GAATTCTCTCACTGTGACAGCCTTGGTTCTCTATCTGTCTGAGTCATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACTGTGACAGCCTTGGTTCTCTATCTGTCTGAGTCATTTC  50

seq1  CACTCCCGTGAAAAACCCCTCACCCATATTCCTGAACATAAGCCTAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCGTGAAAAACCCCTCACCCATATTCCTGAACATAAGCCTAGTAA  100

seq1  AGCTTTATTGGTTCAC-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  149
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCTTTATTGGTTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  150

seq1  GAAAAGGAAAGGAAAGGAAAGAAAAGAAAACAAAATCGATTTCAGTAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAAGGAAAGGAAAGAAAAGAAAACAAAATCGATTTCAGTAAAA  200

seq1  AATAAAATAATAAATAAAAGCAAACGCTTTCTTTCGTAAGTAGCCTTAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAATAAATAAAAGCAAACGCTTTCTTTCGTAAGTAGCCTTAGT  250

seq1  CATAGTGTTTTATATCAGCAATTAAATAGTCACTAATGCAGAAGCCTTAA  299
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATAGTGTTTTATATCAGCAATTAAATAGTCACTAATGCAAAAGCCTTAA  300

seq1  TGGATTTTGTGGCTATAAAAGGCTTGACATTAAAGTGTCCTGAAGAGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTGTGGCTATAAAAGGCTTGACATTAAAGTGTCCTGAAGAGGGG  350

seq1  GGTTTGTCTTCAGAGAAGACTCAGTCATCCTTGAGGGTTTTCCCTGTGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTCTTCAGAGAAGACTCAGTCATCCTTGAGGGTTTTCCCTGTGCT  400

seq1  GTTGGGATGTTTTCCCTCAGCTTAAACCAAAAACAGTCTTCAAACAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGATGTTTTCCCTCAGCTTAAACCAAAAACAGTCTTCAAACAAACA  450

seq1  AACAAAAACCAAAAAACCTACCACGCCCAAGGCAACTTACAAAAGAAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACCAAAAAACCTACCACGCCCAAGGCAACTTACAAAAGAAAGA  500

seq1  GTTTACTTATTTATTTTCCTTGTATTGAGATAGACTTTTTTTTTTTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTATTTATTTTCCTTGTATTGAGATAGACTTTTTTTTTTTTTCT  550

seq1  CTCACATTACATATGTTGTGGATGGCTCTGTGCTGCCTGTATTTTATGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTACATATGTTGTGGATGGCTCTGTGCTGCCTGTATTTTATGTT  600

seq1  AATTCTGCTCCCCCGGGAGAGACTGCCTGGAATGAGGAATGAGTTATCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGCTCCCCCGGGAGAGACTGCCTGGAATGAGGAATGAGTTATCTG  650

seq1  CACAGGTGGCTTCTTGTGAACCAATCCCTTAAAGAATAAAGGAGCCAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGGCTTCTTGTGAACCAATCCCTTAAAGAATAAAGGAGCCAATC  700

seq1  ACTGGGTGAGTAGGCGGGACTTCCGGATTGGTCAGAGGAAGAGAGGAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGAGTAGGCGGGACTTCCGGATTGGTCAGAGGAAGAGAGGAAGC  750

seq1  AGGAGAGAGTTTTAGGTCTTTTGGAATGGGGACAGCATATATGTAAGATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAGTTTTAGGTCTTTTGGAATGGGGACAGCATATATGTAAGATG  800

seq1  TAGCTGCTAGAGTTTCCCGGTATCATGGCGGATGTGTAAGGATTCG-CCA  848
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGCTGCTAGAGTTTCCCGGTATCATGGCGGATGTGTAAGGATTCGCCCA  850

seq1  CCAGAGGAATCAGATTTTAATAAGGCTTACAAGATTAGGTTTTAG-TTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCAGAGGAATCAGATTTTAATAAGGCTTACAAGATTAGGTTTTAGTTTGT  900

seq1  TGTGCCCAGAGATTGAGTTACCATTGTTTCTGAACTAAGTTTGTGTTGGC  947
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TGTGCCCAGAGATTGAGTTACCATTTGTTCTGAACTAAGTTTGTGTTGGC  950

seq1  TTTCCCTTCACACAGTGGGGGCGGCTCAT-CTGGGTTCAAGAGAGAAAGG  996
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  TTTCCCTTCACACAGTGGGGGCGGCTCATCCTGGGTTCAAGAAAGAAAGG  1000

seq1  TATCCTG-TAAAGCATGGGTGTGCTAAATGTGCAACACAAAG  1037
      ||||||| ||||||||||||||||| |||||||||| |||||
seq2  TATCCTGTTAAAGCATGGGTGTGCT-AATGTGCAAC-CAAAG  1040

seq1: chr2_104576930_104578019
seq2: B6Ng01-226F02.g_67_1158 (reverse)

seq1  CCCAAA-GCTCAA-GTTCACACAGACACAGCGA-CCCA-CAGTGAACGGA  46
      |||||| |||||| ||||||||||||||||||| |||| ||||||   ||
seq2  CCCAAAGGCTCAAGGTTCACACAGACACAGCGATCCCACCAGTGA--CGA  48

seq1  GGACTCGACAGGTCAATATGTCAAAGCTCATACCAGGATAACCAGGTTTG  96
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGACT-GACAGGTCAATATGTCAAAGCTCATACCAGGAT-ACCAGGTTTG  96

seq1  ACTACAGATCCCCCAGTGCTGCGCAGGATCTATCCTATCA-CCCATTAAG  145
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTACAGATCCCCCAGTGCTGCGCAGGATCTATCCTATCACCCCATTAAG  146

seq1  ACCGGAAAAGCATGCTAGCCAAATAAAA-CGGACTTTCTGTAATTTCTAG  194
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACC-GAAAAGCATGCTAGCCAAATAAAACCGGACTTTCTGTAATTTCTAG  195

seq1  ACAGAATTCAAGAAACCAGAGAGTGCACAATGACTGTTTCTCAGGCTAGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTCAAGAAACCAGAGAGTGCACAATGACTGTTTCTCAGGCTAGC  245

seq1  GAGCAGTCGCAGCTGAAGCTTCAGATTGTCCTACAGCCTCGCTAGCATAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCGCAGCTGAAGCTTCAGATTGTCCTACAGCCTCGCTAGCATAG  295

seq1  AAGCTGGACAACTCCTGAAAAGTCTACATCTTGAAGCCAGGGGCTGTGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGACAACTCCTGAAAAGTCTACATCTTGAAGCCAGGGGCTGTGAC  345

seq1  TATCTTTAATCCTGG-CCCCCAGTGGGCAGAGGAAGAGGCAGGCCAATCC  393
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATCTTTAATCCTGGCCCCCCAGTGGGCAGAGGAAGAGGCAGGCCAATCC  395

seq1  AGTGCAGCCAAAGCTACAGTGAGACCCTCTCTCAAAAATCAAATCAATAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGCCAAAGCTACAGTGAGACCCTCTCTCAAAAATCAAATCAATAA  445

seq1  AATCAGAATAAATAAACTCTTCATCTTGAAGCTATTTTCCATTTGGTCAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAATAAATAAACTCTTCATCTTGAAGCTATTTTCCATTTGGTCAA  495

seq1  TGGTGTTCTAAAATACCAGGACTGTGTGAAGAGCACTGACTATTCTTCCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCTAAAATACCAGGACTGTGTGAAGAGCACTGACTATTCTTCCA  545

seq1  GAGGACTTGGGTTTGCAAGTAGCAACTACATGGCCACTTACAACTATAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTGGGTTTGCAAGTAGCAACTACATGGCCACTTACAACTATAAA  595

seq1  TCCAATTCCAGGGGAGGGACCCGACACTCCAATTTCCACACATACATGAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCCAGGGGAGGGACCCGACACTCCAATTTCCACACATACATGAT  645

seq1  GCAGACTTACGTGCACGTAAAACAACCATGCATATAAAATAAAAATTAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTTACGTGCACGTAAAACAACCATGCATATAAAATAAAAATTAAT  695

seq1  TTAAAAATTTAAATTATCTAAGAATCTAAAACTAAGCTACAGTAGGTCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTTAAATTATCTAAGAATCTAAAACTAAGCTACAGTAGGTCTG  745

seq1  GTCAAAAGATTTCATCTCTGTATCTTGGTTCTTTTACCAACCACTATAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAGATTTCATCTCTGTATCTTGGTTCTTTTACCAACCACTATAGC  795

seq1  AGTTGAATAATATAGTTAAGCTTGTTCTCAGGTCTACACTGCTAATTATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATAATATAGTTAAGCTTGTTCTCAGGTCTACACTGCTAATTATA  845

seq1  AGAATTTAAAGACTGAAATTGTTCTTGCTTCCCTGAGAAACAAACACATT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAAAGACTGAAATTGTTCTTGCTTCCCTGAGAAACAAACACATT  895

seq1  GAATATCAAACAGAATGATGGATCTATAGGAAAGAAAACATGGGGACACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCAAACAGAATGATGGATCTATAGGAAAGAAAACATGGGGACACA  945

seq1  TTAAACCTAGAGCTCTTAACATTATGGTCTCCTTTTTTTTGTTCAGTTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTAGAGCTCTTAACATTATGGTCTCCTTTTTTTTGTTCAGTTTT  995

seq1  TGTTGTTGTTGGGTTGTTGTTGTTGTTTTTAATGACACTGCCTTATGACC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGGGTTGTTGTTGTTGTTTTTAATGACACTGCCTTATGACC  1045

seq1  CAGTTTGGTCTCAAACTTGCTATTGTAGCTGCAGCAAGTTTGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGTCTCAAACTTGCTATTGTAGCTGCAGCAAGTTTGAATTC  1092