BAC Information

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BAC

Clone NameB6Ng01-226J09
Chromosome2 (Build37)
Map Location 103,518,199 - 103,658,716
singlet/doubletdoublet
Overlap geneAbtb2, Nat10, Caprin1, LOC433458
Upstream geneSlc1a2, Cd44, Pdhx, Apip, Ehf, Elf5, Cat
Downstream geneLOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226J09.bB6Ng01-226J09.g
ACCGA040483GA040484
length1,1321,154
definitionB6Ng01-226J09.b B6Ng01-226J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,657,587 - 103,658,716)(103,518,199 - 103,519,321)
sequence
atatgcttatgtaaggatttcatttatacattgtgtatatataaatacat
gcattactgtctaaaaacaagaaaaaacatatacatgaataaataataaa
agataagaattttaatgagggggctggtgagatggctcagtgggtaagag
cacccgactgctcttccgaaggtccagagttcaaatcccagcaaccacat
ggtggctcacaaccatccgtaaggagatctgactccctcttctggagtgt
ctgaagacagctacagtgtacttacatataataaataaataaatcttaac
aaaaaaaaaaaagaattttaatgattaaaaaaagctatcttaaaaagata
agaaagtctactttatctatttgaaatataatacagagtcaggcatagtg
gtgtatgcctttaatcacagcagtcaggaagcagaggcaggcagatctct
gtgagttccaggacaagcctggtctaatacagtgagttcctagcagccag
gtctacacagagaaaccctgtcttgaaaaaacaaacaaacaacaaaaatt
cttttttgaaatataacacaggtcatctctctgaatagtcatatgtaaag
gtccttttttttctttcaaagttctcaggacctcggagtcccaccctcta
tggggtctgctggctcctccatctccccagccctccagcccctctccccc
atcactgcaggctagttgcctgggagttcctgggcgtcctgacttcacag
cttctttcttcccttcctgcagtcactgttaacttaggaaagagtccgta
ttcactactggttcaacatggaaatgtttactccaaacaaggatacaggc
attgcctttcagttcttctgaaaagaatcacagacagacagacaggccga
ctggcagacagccacacttgttagtgacttttaaataagtgttgcagttt
tcctctttacccagctcgctcccaaaataaatgagactgggattttttat
aatttattttacaagctttaaggatacaacaactgagtaatatttacttt
atttttatcctctaactaatgctggctaacttcctagtcaaaatccagtg
ttactgcatttagtactgatctgctctctggg
gaattcctgctggaggctgactgcagtgagcgttcccctgccacgggttc
tgatttcctggtgtatgctggaagactgcacagtgagctggagagatttc
caagctggcattccctgggatggattctgaagctcccttctctgctgctg
aagtgctaatgagaaacactaattgcacttggccaggggctgggacagtc
ccactcatgaagtagagagggcagtatccctttccagtaatgtctcctgg
ccttctgagcttagagaagaaatggactgagtgggaagggggaagatgct
gcaggcagctggcctttggaggagcaggattgtgatcatccaaactgagg
aagcataagtgctatagagaaaacgccatgtctccacgtcaccccagaac
cctgaaagcagcactctggcccaattaagcatgctaaggggccccggagc
ctataggccagttccttggcaaatccgatttctgtctacatattggtaaa
atcccaggagaactggtccacttctctctctttatgacctctgaggcact
aggcagagcaaagacccacattcccaaggctcagtcgggcttgtcctgtg
acttagtcaggacagggagccctgagccctgagcacagtagctgtgatat
ggcgtgcagagtttcttctcccagtgtgactcctccatcttgttccctca
caggtgtcctctctctccctgcctacttcagtccctacaatggtgggtcc
ctgggccacgatgagcgagcagatgcctatgctcagctggaacttcggac
actggagcagtcactcctggccacgtgtgtgggcagcatctccgagctca
gtaaggtatggtgcttgggggagaaagtgagacagaatgctctgacttgg
tcctggcactaaaccaggcctttcccaagcctgcctgtgtacctgaactc
cccattctcttttcctcgagttctgccctgtggcttcagtttctagtcca
aaacactagccacccacttgaagctctcacatattcttactctcataatt
actttagttttccatttccgaacctaagaaaattataagaggtcattcga
ccagaagtctttgctttcgtttgccctgtgcagctttccccagtggtcca
taga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_103657587_103658716
seq2: B6Ng01-226J09.b_52_1183 (reverse)

seq1  CCCAGAGAGCCAGATCAGTACTAAAATGCAAGTACCACTGGGATTTTGAC  50
      ||||||||| |||||||||||| |||||| |||| |||| ||||||||||
seq2  CCCAGAGAG-CAGATCAGTACT-AAATGC-AGTAACACT-GGATTTTGAC  46

seq1  TAGG-AGGTAGCCAG-ATTAGTTTAGAGGATTAAAATAAAGT-AATATTA  97
      |||| || ||||||| ||||| ||||||||| |||||||||| |||||||
seq2  TAGGAAGTTAGCCAGCATTAG-TTAGAGGATAAAAATAAAGTAAATATTA  95

seq1  CTCAGTTGTTGTATCCTTAAAGCTTGTTAAATAAA-TATAAAAA--TCCA  144
      ||||||||||||||||||||||||||| ||||||| ||||||||   |||
seq2  CTCAGTTGTTGTATCCTTAAAGCTTGTAAAATAAATTATAAAAAATCCCA  145

seq1  GTCTCATTTA-TTTGGGAGCGAGCTGGGTAAAGAGGAAAACTGCAACACT  193
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTTATTTTGGGAGCGAGCTGGGTAAAGAGGAAAACTGCAACACT  195

seq1  TATTTAAAAGTCACTAACAAGTGTGGCTGTCTGCCAGTCGGCCTGTCTGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAGTCACTAACAAGTGTGGCTGTCTGCCAGTCGGCCTGTCTGT  245

seq1  CTGTCTGTGATTCTTTTCAGAAGAACTGAAAGGCAATGCCTGTATCCTTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTGATTCTTTTCAGAAGAACTGAAAGGCAATGCCTGTATCCTTG  295

seq1  TTTGGAGTAAACATTTCCATGTTGAACCAGTAGTGAATACGGACTCTTTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTAAACATTTCCATGTTGAACCAGTAGTGAATACGGACTCTTTC  345

seq1  CTAAGTTAACAGTGACTGCAGGAAGGGAAGAAAGAAGCTGTGAAGTCAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTAACAGTGACTGCAGGAAGGGAAGAAAGAAGCTGTGAAGTCAGG  395

seq1  ACGCCCAGGAACTCCCAGGCAACTAGCCTGCAGTGATGGGGGAGAGGGGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCAGGAACTCCCAGGCAACTAGCCTGCAGTGATGGGGGAGAGGGGC  445

seq1  TGGAGGGCTGGGGAGATGGAGGAGCCAGCAGACCCCATAGAGGGTGGGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGCTGGGGAGATGGAGGAGCCAGCAGACCCCATAGAGGGTGGGAC  495

seq1  TCCGAGGTCCTGAGAACTTTGAAAGAAAAAAAAGGACCTTTACATATGAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGGTCCTGAGAACTTTGAAAGAAAAAAAAGGACCTTTACATATGAC  545

seq1  TATTCAGAGAGATGACCTGTGTTATATTTCAAAAAAGAATTTTTGTTGTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAGAGATGACCTGTGTTATATTTCAAAAAAGAATTTTTGTTGTT  595

seq1  TGTTTGTTTTTTCAAGACAGGGTTTCTCTGTGTAGACCTGGCTGCTAGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTTCAAGACAGGGTTTCTCTGTGTAGACCTGGCTGCTAGGA  645

seq1  ACTCACTGTATTAGACCAGGCTTGTCCTGGAACTCACAGAGATCTGCCTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGTATTAGACCAGGCTTGTCCTGGAACTCACAGAGATCTGCCTG  695

seq1  CCTCTGCTTCCTGACTGCTGTGATTAAAGGCATACACCACTATGCCTGAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCCTGACTGCTGTGATTAAAGGCATACACCACTATGCCTGAC  745

seq1  TCTGTATTATATTTCAAATAGATAAAGTAGACTTTCTTATCTTTTTAAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTATATTTCAAATAGATAAAGTAGACTTTCTTATCTTTTTAAGA  795

seq1  TAGCTTTTTTTAATCATTAAAATTCTTTTTTTTTTTTGTTAAGATTTATT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTTTTAATCATTAAAATTCTTTTTTTTTTTTGTTAAGATTTATT  845

seq1  TATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGA  895

seq1  GGGAGTCAGATCTCCTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCAGATCTCCTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGG  945

seq1  GATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTG  995

seq1  AGCCATCTCACCAGCCCCCTCATTAAAATTCTTATCTTTTATTATTTATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCACCAGCCCCCTCATTAAAATTCTTATCTTTTATTATTTATT  1045

seq1  CATGTATATGTTTTTTCTTGTTTTTAGACAGTAATGCATGTATTTATATA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATATGTTTTTTCTTGTTTTTAGACAGTAATGCATGTATTTATATA  1095

seq1  TACACAATGTATAAATGAAATCCTTACATAAGCATAT  1130
      |||||||||||||||||||||||||||||||||||||
seq2  TACACAATGTATAAATGAAATCCTTACATAAGCATAT  1132

seq1: chr2_103518199_103519321
seq2: B6Ng01-226J09.g_67_1220

seq1  GAATTCCTGCTGGAGGCTGACTGCAGTGAGCGTTCCCCTGCCACGGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTGGAGGCTGACTGCAGTGAGCGTTCCCCTGCCACGGGTTC  50

seq1  TGATTTCCTGGTGTATGCTGGAAGACTGCACAGTGAGCTGGAGAGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCTGGTGTATGCTGGAAGACTGCACAGTGAGCTGGAGAGATTTC  100

seq1  CAAGCTGGCATTCCCTGGGATGGATTCTGAAGCTCCCTTCTCTGCTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGCATTCCCTGGGATGGATTCTGAAGCTCCCTTCTCTGCTGCTG  150

seq1  AAGTGCTAATGAGAAACACTAATTGCACTTGGCCAGGGGCTGGGACAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTAATGAGAAACACTAATTGCACTTGGCCAGGGGCTGGGACAGTC  200

seq1  CCACTCATGAAGTAGAGAGGGCAGTATCCCTTTCCAGTAATGTCTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATGAAGTAGAGAGGGCAGTATCCCTTTCCAGTAATGTCTCCTGG  250

seq1  CCTTCTGAGCTTAGAGAAGAAATGGACTGAGTGGGAAGGGGGAAGATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAGCTTAGAGAAGAAATGGACTGAGTGGGAAGGGGGAAGATGCT  300

seq1  GCAGGCAGCTGGCCTTTGGAGGAGCAGGATTGTGATCATCCAAACTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGCTGGCCTTTGGAGGAGCAGGATTGTGATCATCCAAACTGAGG  350

seq1  AAGCATAAGTGCTATAGAGAAAACGCCATGTCTCCACGTCACCCCAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAGTGCTATAGAGAAAACGCCATGTCTCCACGTCACCCCAGAAC  400

seq1  CCTGAAAGCAGCACTCTGGCCCAATTAAGCATGCTAAGGGGCCCCGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGCAGCACTCTGGCCCAATTAAGCATGCTAAGGGGCCCCGGAGC  450

seq1  CTATAGGCCAGTTCCTTGGCAAATCCGATTTCTGTCTACATATTGGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGCCAGTTCCTTGGCAAATCCGATTTCTGTCTACATATTGGTAAA  500

seq1  ATCCCAGGAGAACTGGTCCACTTCTCTCTCTTTATGACCTCTGAGGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGAGAACTGGTCCACTTCTCTCTCTTTATGACCTCTGAGGCACT  550

seq1  AGGCAGAGCAAAGACCCACATTCCCAAGGCTCAGTCGGGCTTGTCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCAAAGACCCACATTCCCAAGGCTCAGTCGGGCTTGTCCTGTG  600

seq1  ACTTAGTCAGGACAGGGAGCCCTGAGCCCTGAGCACAGTAGCTGTGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCAGGACAGGGAGCCCTGAGCCCTGAGCACAGTAGCTGTGATAT  650

seq1  GGCGTGCAGAGTTTCTTCTCCCAGTGTGACTCCTCCATCTTGTTCCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCAGAGTTTCTTCTCCCAGTGTGACTCCTCCATCTTGTTCCCTCA  700

seq1  CAGGTGTCCTCTCTCTCCCTGCCTACTTCAGTCCCTACAATGGTGGGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTCCTCTCTCTCCCTGCCTACTTCAGTCCCTACAATGGTGGGTCC  750

seq1  CTGGGCCACGATGAGCGAGCAGATGCCTATGCTCAGCTGGAACTTCGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCACGATGAGCGAGCAGATGCCTATGCTCAGCTGGAACTTCGGAC  800

seq1  ACTGGAGCAGTCACTCCTGGCCACGTGTGTGGGCAGCATCTCCGAGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGCAGTCACTCCTGGCCACGTGTGTGGGCAGCATCTCCGAGCTCA  850

seq1  GTAA-GTATGGTGCTTGGGGGAGAAAGTGAGACAGAATGCTCTGACTGGG  899
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAAGGTATGGTGCTTGGGGGAGAAAGTGAGACAGAATGCTCTGACTTGG  900

seq1  TCCTGGCACTTAGACAGGCC-TTCCCAAGCCTG-CTGTGTACCTGAACTC  947
      |||||||||| |  |||||| |||||||||||| ||||||||||||||||
seq2  TCCTGGCACTAAACCAGGCCTTTCCCAAGCCTGCCTGTGTACCTGAACTC  950

seq1  CC--ATCTC-TTTCCTCGAGTTCTTGCCTGTGGCTTCAG-TTCTAGT-CA  992
      ||   |||| ||||||||||||||  ||||||||||||| ||||||| ||
seq2  CCCATTCTCTTTTCCTCGAGTTCTGCCCTGTGGCTTCAGTTTCTAGTCCA  1000

seq1  AAACACTAGCCA-CCACTTGAAG--CTCACATA-TCT---ACTCATAAAT  1035
      |||||||||||| ||||||||||  |||||||| |||    ||||||| |
seq2  AAACACTAGCCACCCACTTGAAGCTCTCACATATTCTTACTCTCATAATT  1050

seq1  AATTTAGTTTTCCATT--CCAAC--TAGAAAA-TATTAGA-GTCATAGGA  1079
      | ||||||||||||||  | |||   |||||| ||| ||| |||||  ||
seq2  ACTTTAGTTTTCCATTTCCGAACCTAAGAAAATTATAAGAGGTCATTCGA  1100

seq1  -CAG-AGTC-TTGCTTCCTTTTGCC---TGCAGCTTT-CCCAGTG---CA  1119
       ||| |||| |||||| | ||||||   ||||||||| |||||||   ||
seq2  CCAGAAGTCTTTGCTTTCGTTTGCCCTGTGCAGCTTTCCCCAGTGGTCCA  1150

seq1  TAGA  1123
      ||||
seq2  TAGA  1154