BAC Information

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BAC

Clone NameB6Ng01-226L24
Chromosome2 (Build37)
Map Location 172,333,495 - 172,453,338
singlet/doubletdoublet
Overlap geneLOC629957, Tcfap2c
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik
Downstream geneLOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226L24.bB6Ng01-226L24.g
ACCGA040600GA040601
length1,2131,008
definitionB6Ng01-226L24.b B6Ng01-226L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,452,170 - 172,453,338)(172,333,495 - 172,334,496)
sequence
gaattcatcttttgccaaggggaaaacaaaaacccgtctgtcctcccaaa
gaacagttggggctcgctgagcccaggaggcgggtgtgggccgggatggt
ggcagaaacctggctcagaggagagctgggtgggccgagggacacaggtg
gaaagcaaagtcctaggaccgtgcctagagatgaagccaagcccgacctg
acaccccggctccacctctgaggaccccacagcttcacattagcccaatc
ccatccctggacagcctcctcatctaacccaacgccttctctgcatgcta
tggtgattggctgatgtaattcagagctaagccaaccatcaagttaggta
ttgtgtgagctcagccattggtcaggaggtggtccaatcaacattgcgtt
tgtttcaaacctggagaatgtcctctttctccgttatccaatacctcatt
tattcagcaagaatgagggggtaagggctggagagataactcagaggtta
agagcactggctgctcttgcagaggacctggcttcagttcccagcattat
atcaaatggcttacaacagcctgtaactccaacctgtaactccagtttta
agggatccaatgcccacttctggtctctgcaggcattacacacacacaca
cacacacacacacacacacacacacacacacactgcaggcattacacaca
cacacacacacacacacacacacacacacacacacacacacacctttaaa
aataaaccaaatagtggtggccttatgccctttaatcccactaaaataag
tgggttggggcagaggcaggtgaatctttgagttcgaggcagtgagcaag
ctgtgataaccaaagctacacagagaaacccttatctcacaaaaccacaa
gacatttagataaataaaatataaaattagctggggtgaacattatgccc
tttaattctctaatttccagcactttacttccagcacttggagaggtcag
aagaggccaaaactggaaaaaacttgtgttcctcagaaaaccagtaatga
ataaataaataaataataagtaaatagtaataatcatccttaccgggatt
aaacggggtcagaaggttaagaagccactgggctgcctcctttccaaagg
aaccaggggtttctaattcccttaagcacagccacatgacgatttgcctg
taactccagttcc
gaattccagtcctgacttcctttggtgatgaatggcaatatggaaatgca
agctgaataaaccctttcctccccagcttgcttcttggtcatgatgtctg
tgcaggagtagaaaccccgactaaggtagcagcttttcttgtcttgtctt
ttcttttctcttctttttgttttccttttcttgtgggtttttggagtgaa
ctcgttgcatggcaagcaccgcatgcctgagccctccccccaccccggcc
cacacacacgcatgtaggctctgtctgccgtgctgcatgcatacaacagt
tcttgggttctaagaaaacagtccttgagatgtggtctctgccttaccat
ccaattcctggtcccactccactggaatgagaaaccctgggactggatgg
agccaggcaaccagagcttagtaagtgtccaggagtccctgtggacagca
gcgtctggcagtctttgtctagctttggaagacagccagttggggaaggt
gggtcagttctgagcaggaacaaggaaggaccttcttttgaggaccaaag
agagcttcagatcttccttaggccacttggccttggttattcctaggcgg
agtccacagccccatccctgggaagtggacgttgccccacacgattgaga
ctccacttggtttgcccctgtttgaaatcctgggcttctttttatttttt
tcaaaggggattatatttaaattattagacaacatttcaattatctttca
attatttagaaatttaaaatttattattatacgattgtgtgtatggcagg
gttcacatcgcaacatgcatatggaggccagagaacaactaggggagtca
gttctcttcctcccactgggatctgggaactgaactcaggaggttgggtt
tgtgtagcgagggccttagtctgcgccgtcagctcactgaccctcaatta
aaaaaaaaaaaaatgtactgtggtgctgttgtttgttgtgtgagaagaaa
gtattgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172452170_172453338
seq2: B6Ng01-226L24.b_42_1254 (reverse)

seq1  GGAACTGGGGTTACAGGCAAAACTGTCATGTG--CGTGCT---AGGAATT  45
      |||||||| |||||||||||| | ||||||||   |||||    ||||||
seq2  GGAACTGGAGTTACAGGCAAATC-GTCATGTGGCTGTGCTTAAGGGAATT  49

seq1  -GAA--CCCTGG-TCCTTT-GAAAG--AGCAG-CCAGTG--CTCTTAA-C  84
       |||  |||||| |||||| |||||   |||| ||||||   |||||| |
seq2  AGAAACCCCTGGTTCCTTTGGAAAGGAGGCAGCCCAGTGGCTTCTTAACC  99

seq1  TTCTGACCCC--TTTATCCCTGTAAAGATTATTATTATTATT--ATTATT  130
      ||||||||||  || ||||| |||| ||| ||||||| ||||   |||||
seq2  TTCTGACCCCGTTTAATCCCGGTAAGGATGATTATTACTATTTACTTATT  149

seq1  A-TTATT--ATTATT-ATTACTGGTTTTCTGAG--ACAC-AGTTTCT--C  171
      | |||||   ||||| |||||||||||||||||  |||| ||||| |  |
seq2  ATTTATTTATTTATTCATTACTGGTTTTCTGAGGAACACAAGTTTTTTCC  199

seq1  AGTTT--GCCTC-TCTG-CCTCT-CAAGTGCTGG-AGT-AAGTGCTGG-A  213
      |||||  ||||| |||| ||||| |||||||||| ||| ||||||||| |
seq2  AGTTTTGGCCTCTTCTGACCTCTCCAAGTGCTGGAAGTAAAGTGCTGGAA  249

seq1  ATTAGAGAATTAAA-GGCAT-ATGTTCA-CCCAGCTAA-TTTATA-TTTA  258
      |||||||||||||| ||||| ||||||| ||||||||| |||||| ||||
seq2  ATTAGAGAATTAAAGGGCATAATGTTCACCCCAGCTAATTTTATATTTTA  299

seq1  TTTATCTAAATGTCTTGTGGTTTTGTGAGAT-AGGGTTTCTCTGTGTAGC  307
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTATCTAAATGTCTTGTGGTTTTGTGAGATAAGGGTTTCTCTGTGTAGC  349

seq1  TTTGGTTATCACAGCTTGCTCACTGCCTCGAACTCAAAGATTCACCTGCC  357
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTATCACAGCTTGCTCACTGCCTCGAACTCAAAGATTCACCTGCC  399

seq1  TCTGCCCCAACCCAC-TATTTTAGTGGGATTAAA-GGCATAAGGCCACCA  405
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  TCTGCCCCAACCCACTTATTTTAGTGGGATTAAAGGGCATAAGGCCACCA  449

seq1  CTATTTGGTTTATTTTTAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  455
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGTTTATTTTTAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  499

seq1  TGTGTGTGTGTGTGTGTGTGTAATGCCTGCAGTGTGTGTGTGTGTGTGTG  505
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTAATGCCTGCAGTGTGTGTGTGTGTGTGTG  549

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTAATGCCTGCAGAGACCAGAAGTG  555
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTAATGCCTGCAGAGACCAGAAGTG  599

seq1  GGCATTGGATCCCTTAAAACTGGAGTTACAGGTTGGAGTTACAGGCTGTT  605
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGGATCCCTTAAAACTGGAGTTACAGGTTGGAGTTACAGGCTGTT  649

seq1  GTAAGCCATTTGATATAATGCTGGGAACTGAAGCCAGGTCCTCTGCAAGA  655
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCATTTGATATAATGCTGGGAACTGAAGCCAGGTCCTCTGCAAGA  699

seq1  GCAGCCAGTGCTCTTAACCTCTGAGTTATCTCTCCAGCCCTTACCCCCTC  705
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGTGCTCTTAACCTCTGAGTTATCTCTCCAGCCCTTACCCCCTC  749

seq1  ATTCTTGCTGAATAAATGAGGTATTGGATAACGGAGAAAGAGGACATTCT  755
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCTGAATAAATGAGGTATTGGATAACGGAGAAAGAGGACATTCT  799

seq1  CCAGGTTTGAAACAAACGCAATGTTGATTGGACCACCTCCTGACCAATGG  805
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTGAAACAAACGCAATGTTGATTGGACCACCTCCTGACCAATGG  849

seq1  CTGAGCTCACACAATACCTAACTTGATGGTTGGCTTAGCTCTGAATTACA  855
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCACACAATACCTAACTTGATGGTTGGCTTAGCTCTGAATTACA  899

seq1  TCAGCCAATCACCATAGCATGCAGAGAAGGCGTTGGGTTAGATGAGGAGG  905
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCAATCACCATAGCATGCAGAGAAGGCGTTGGGTTAGATGAGGAGG  949

seq1  CTGTCCAGGGATGGGATTGGGCTAATGTGAAGCTGTGGGGTCCTCAGAGG  955
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGGGATGGGATTGGGCTAATGTGAAGCTGTGGGGTCCTCAGAGG  999

seq1  TGGAGCCGGGGTGTCAGGTCGGGCTTGGCTTCATCTCTAGGCACGGTCCT  1005
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCGGGGTGTCAGGTCGGGCTTGGCTTCATCTCTAGGCACGGTCCT  1049

seq1  AGGACTTTGCTTTCCACCTGTGTCCCTCGGCCCACCCAGCTCTCCTCTGA  1055
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTGCTTTCCACCTGTGTCCCTCGGCCCACCCAGCTCTCCTCTGA  1099

seq1  GCCAGGTTTCTGCCACCATCCCGGCCCACACCCGCCTCCTGGGCTCAGCG  1105
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTTTCTGCCACCATCCCGGCCCACACCCGCCTCCTGGGCTCAGCG  1149

seq1  AGCCCCAACTGTTCTTTGGGAGGACAGACGGGTTTTTGTTTTCCCCTTGG  1155
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAACTGTTCTTTGGGAGGACAGACGGGTTTTTGTTTTCCCCTTGG  1199

seq1  CAAAAGATGAATTC  1169
      ||||||||||||||
seq2  CAAAAGATGAATTC  1213

seq1: chr2_172333495_172334496
seq2: B6Ng01-226L24.g_66_1073

seq1  GAATTCCAGTCCTGACTTCCTTTGGTGATGAATGGCAATATGGAAATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTGACTTCCTTTGGTGATGAATGGCAATATGGAAATGCA  50

seq1  AGCTGAATAAACCCTTTCCTCCCCAGCTTGCTTCTTGGTCATGATGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATAAACCCTTTCCTCCCCAGCTTGCTTCTTGGTCATGATGTCTG  100

seq1  TGCAGGAGTAGAAACCCCGACTAAGGTAGCAGCTTTTCTTGTCTTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGTAGAAACCCCGACTAAGGTAGCAGCTTTTCTTGTCTTGTCTT  150

seq1  TTCTTTTCTCTTCTTTTTGTTTTCCTTTTCTTGTGGGTTTTTGGAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTCTTCTTTTTGTTTTCCTTTTCTTGTGGGTTTTTGGAGTGAA  200

seq1  CTCGTTGCATGGCAAGCACCGCATGCCTGAGCCCTCCCCCCACCCCGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTGCATGGCAAGCACCGCATGCCTGAGCCCTCCCCCCACCCCGGCC  250

seq1  CACACACACGCATGTAGGCTCTGTCTGCCGTGCTGCATGCATACAACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACGCATGTAGGCTCTGTCTGCCGTGCTGCATGCATACAACAGT  300

seq1  TCTTGGGTTCTAAGAAAACAGTCCTTGAGATGTGGTCTCTGCCTTACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTTCTAAGAAAACAGTCCTTGAGATGTGGTCTCTGCCTTACCAT  350

seq1  CCAATTCCTGGTCCCACTCCACTGGAATGAGAAACCCTGGGACTGGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCTGGTCCCACTCCACTGGAATGAGAAACCCTGGGACTGGATGG  400

seq1  AGCCAGGCAACCAGAGCTTAGTAAGTGTCCAGGAGTCCCTGTGGACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCAACCAGAGCTTAGTAAGTGTCCAGGAGTCCCTGTGGACAGCA  450

seq1  GCGTCTGGCAGTCTTTGTCTAGCTTTGGAAGACAGCCAGTTGGGGAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGGCAGTCTTTGTCTAGCTTTGGAAGACAGCCAGTTGGGGAAGGT  500

seq1  GGGTCAGTTCTGAGCAGGAACAAGGAAGGACCTTCTTTTGAGGACCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTTCTGAGCAGGAACAAGGAAGGACCTTCTTTTGAGGACCAAAG  550

seq1  AGAGCTTCAGATCTTCCTTAGGCCACTTGGCCTTGGTTATTCCTAGGCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTCAGATCTTCCTTAGGCCACTTGGCCTTGGTTATTCCTAGGCGG  600

seq1  AGTCCACAGCCCCATCCCTGGGAAGTGGACGTTGCCCCACACGATTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACAGCCCCATCCCTGGGAAGTGGACGTTGCCCCACACGATTGAGA  650

seq1  CTCCACTTGGTTTGCCCCTGTTTGAAATCCTGGGCTTCTTTTTATTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTGGTTTGCCCCTGTTTGAAATCCTGGGCTTCTTTTTATTTTTT  700

seq1  TCAAAGGGGATTATATTTAAATTATTAGACAACATTTCAATTATCTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGGATTATATTTAAATTATTAGACAACATTTCAATTATCTTTCA  750

seq1  ATTATTTAGAAATTTAAAATTTATTATTATACGATTGTGTGTATGGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAGAAATTTAAAATTTATTATTATACGATTGTGTGTATGGCAGG  800

seq1  GTTCACATCGCAACATGCATATGGAGGCCAGAGAACAACTAGGGGGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTCACATCGCAACATGCATATGGAGGCCAGAGAACAACTA-GGGGAGTC  849

seq1  AGTTCTC-TCCTCCCACTGGGATCTGGGAACTGAACTCAGGAGGTTGGGT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTTCCTCCCACTGGGATCTGGGAACTGAACTCAGGAGGTTGGGT  899

seq1  TTGTGTAGCGAGGGCCTTAGTCTGCGCCGTCAGCTCACTGACCCTCAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGCGAGGGCCTTAGTCTGCGCCGTCAGCTCACTGACCCTCAATT  949

seq1  --AAAAAAAAAAAATGTACTGTGGTG-TG-TGTTTG-TGTGTGAG-AGAG  993
        |||||||||||||||||||||||| || |||||| |||||||| ||| 
seq2  AAAAAAAAAAAAAATGTACTGTGGTGCTGTTGTTTGTTGTGTGAGAAGAA  999

seq1  AGTATTGTG  1002
      |||||||||
seq2  AGTATTGTG  1008