BAC Information

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BAC

Clone NameB6Ng01-226M06
Chromosome2 (Build37)
Map Location 100,575,543 - 100,576,678
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226M06.bB6Ng01-226M06.g
ACCGA040610GA040611
length1,0321,127
definitionB6Ng01-226M06.b B6Ng01-226M06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagctatgtagtattctgttgtgtaaatgtacc
atccattcctctgttgagggacatctgggttctttccagattttggctat
tataaataaggctgctatgaacatagtagagcatgttcatgttgaagcat
cttctgggtatatgcccaggagtggtattagtggatctttaggtattact
atgtccagttttctaaggaaatgccaaactgatttccagaatggttgtac
cagcatgcaattccaccagcaatggaggaatattcctctttctccatatc
ctcaccagcatctgctgtcagatgtttttgatcttagccattctgattgg
tgtgaggtggaagctcatagttgttttgatttgcagcctaccattgaact
gagcacagggtccccaatgaaggagctagagaaagtacccaaggagctaa
aggggtttgcagccccattggaggaacaacaatataaactaatcagtacc
cccagagtttccagggactacactaccaaccaaagagtacacatggtggg
actcatggctctagctgcatttgtagcacaggatggcctagttggtcacc
aatatgaggtgaggcccttggtcctgtgaagattctatgccccagtgtag
gggaatgcaagggccaggaggcaggagtgggtgtgttggtgagcaggagg
aagggatatggggttttcagaaagggaaaccagggaaaggggataatatt
ctacatgtaaataaagaaaatatcgaataaaaaattcttaaaaataaaat
aaaacataattacagacacacacacacacacacacacacacacacactca
cacacacacagatctcttggttagatcaaaacagatggttacacctgata
attgaacctagtcctgaaaatatgcaaatttttgtgtgtatcatgatggc
ttacagatcttcacttagaagacaagccgtgcccctacagacttttcctg
aaagggcccacttgcattttcacaggttttct

gaattcagatcttctttcatatttctatcaacaccattttagagaaataa
accatataactggcaacaatgatttataggtagactctacaattctgttt
ttgtttgtttgtttgttcggtttttatgttttgttttgttttttgtttgt
ttttgtttttgtttgttttttgaggcagggtttctctgtatagccctggc
tatcctggaactcactctgtagaccaggctggccttaaactcagaaattt
gactgcctctgcctcccaagtgctgggattaaaggcatgcaccaccactg
cctggcatacaatgctgttttacctttagagaaatattgcaagtagtaaa
cacaatgtgggtgcaaatatcaataatagttaagattacttgttttcata
tgcttcatgtataatatctcttttgatatttacaactcttcgcaataaat
agtttattaaactgcattaaggaaaagaaataaatgcttatggggctgga
catacagctcagtggctaagagtgctgggacctacatttgattcccagca
caaacatgttaaaccacctgcaactaaattttcaggggatctaacatcat
ctttagcatctataggctccagaaaaatatgtggttacagacacatatag
ggaaaatactcatacacatacaataaagtagaaaatattctaacattaga
aaacctcatgttttcttaacctaaaaattgaaaaaaaatcattttatata
cagtatttataagaccaaaggcttgttcttaggatactaacaagcacaca
cacacacacacacacacacacacacacacacacacacacacatattattg
agtctctggcgtatgtgaggttaccaggacaacaaaggacgtaatggttt
agggctatgtttgtctttcaaggacaagaatattgtatgagaggtatatg
tatctaaatatatcacactctacaatgtcacatttaaaagtataaacagg
gctggtgagatggctagtaggtagagcacccgactgctcttctgagttcg
gagtcaatccagcaaccacatggtgcttacaccttatcctaataagatct
gactcaatcttcttgggagtgttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100575543_100576678
seq2: B6Ng01-226M06.g_66_1192

seq1  GAATTCAGATCTTCTTTCATATTTCTATCAACACCATTTTAGAGAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCTTCTTTCATATTTCTATCAACACCATTTTAGAGAAATAA  50

seq1  ACCATATAACTGGCAACAATGATTTATAGGTAGACTCTACAATTCTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATAACTGGCAACAATGATTTATAGGTAGACTCTACAATTCTGTTT  100

seq1  TTGTTTGTTTGTTTGTTCGGTTTTTATGTTTTGTTTTGTTTTTTGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTCGGTTTTTATGTTTTGTTTTGTTTTTTGTTTGT  150

seq1  TTTTGTTTTTGTTTGTTTTTTGAGGCAGGGTTTCTCTGTATAGCCCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGTTTGTTTTTTGAGGCAGGGTTTCTCTGTATAGCCCTGGC  200

seq1  TATCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTAAACTCAGAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTAAACTCAGAAATTT  250

seq1  GACTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACTG  300

seq1  CCTGGCATACAATGCTGTTTTACCTTTAGAGAAATATTGCAAGTAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATACAATGCTGTTTTACCTTTAGAGAAATATTGCAAGTAGTAAA  350

seq1  CACAATGTGGGTGCAAATATCAATAATAGTTAAGATTACTTGTTTTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTGGGTGCAAATATCAATAATAGTTAAGATTACTTGTTTTCATA  400

seq1  TGCTTCATGTATAATATCTCTTTTGATATTTACAACTCTTCGCAATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATGTATAATATCTCTTTTGATATTTACAACTCTTCGCAATAAAT  450

seq1  AGTTTATTAAACTGCATTAAGGAAAAGAAATAAATGCTTATGGGGCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTAAACTGCATTAAGGAAAAGAAATAAATGCTTATGGGGCTGGA  500

seq1  CATACAGCTCAGTGGCTAAGAGTGCTGGGACCTACATTTGATTCCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGCTCAGTGGCTAAGAGTGCTGGGACCTACATTTGATTCCCAGCA  550

seq1  CAAACATGTTAAACCACCTGCAACTAAATTTTCAGGGGATCTAACATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGTTAAACCACCTGCAACTAAATTTTCAGGGGATCTAACATCAT  600

seq1  CTTTAGCATCTATAGGCTCCAGAAAAATATGTGGTTACAGACACATATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCATCTATAGGCTCCAGAAAAATATGTGGTTACAGACACATATAG  650

seq1  GGAAAATACTCATACACATACAATAAAGTAGAAAATATTCTAACATTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATACTCATACACATACAATAAAGTAGAAAATATTCTAACATTAGA  700

seq1  AAACCTCATGTTTTCTTAACCTAAAAATTGAAAAAAAATCATTTTATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCATGTTTTCTTAACCTAAAAATTGAAAAAAAATCATTTTATATA  750

seq1  CAGTATTTATAAGACC-AAGGCTTGTTCTTAGGATACTAACAAGCACACA  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAGTATTTATAAGACCAAAGGCTTGTTCTTAGGATACTAACAAGCACACA  800

seq1  CACACACACACACACACACACACACACACACACACACACACATATTATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACATATTATTG  850

seq1  AGTCTCTGGCGTATGTGAGGTTACCAGGACAACAAAGGACGTAATGGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGGCGTATGTGAGGTTACCAGGACAACAAAGGACGTAATGGTTT  900

seq1  AGGGCTATGTTTGTCTTTCAAAGGACAAAGAATATTGTATGAGAGGTAAT  949
      ||||||||||||||||||| |||||| |||||||||||||||||||| ||
seq2  AGGGCTATGTTTGTCTTTC-AAGGAC-AAGAATATTGTATGAGAGGT-AT  947

seq1  ATGTATCTAAATATAATCACACTCTACAATGTCACATTTAAAAGTATAAA  999
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  ATGTATCTAAATAT-ATCACACTCTACAATGTCACATTTAAAAGTAT-AA  995

seq1  ACAGGGCTGGTGAGATGGCTTAGTAGGTAAGAGCACCCGACTGCTCTTCT  1049
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  ACAGGGCTGGTGAGATGGC-TAGTAGGT-AGAGCACCCGACTGCTCTTCT  1043

seq1  GAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTTACAACTATC  1099
      ||  || ||||| ||||   |||||||||||||||| ||||||| ||   
seq2  GA--GTTCGGAG-TCAA--TCCAGCAACCACATGGT-GCTTACACCTTAT  1087

seq1  CCTAATAAGATCTGACTCCATCTTCT--GGAGTG-TCTGA  1136
      |||||||||||||||||| |||||||  |||||| |||||
seq2  CCTAATAAGATCTGACTCAATCTTCTTGGGAGTGTTCTGA  1127


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