BAC Information

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BAC

Clone NameB6Ng01-226P12
Chromosome2 (Build37)
Map Location 121,260,901 - 121,426,480
singlet/doubletdoublet
Overlap genePdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5
Upstream geneGanc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226P12.bB6Ng01-226P12.g
ACCGA040762GA040763
length8801,160
definitionB6Ng01-226P12.b B6Ng01-226P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,260,901 - 121,261,778)(121,425,305 - 121,426,480)
sequence
gaattcataagccatcattttaaaatgcttgggagttttgcacttataat
ccaagccagttttttgtttttgtttttttgttttgttttgttttgttttt
tgtttttcgagacagagtttctctgtatagccctggctgtcctggaactc
actctgtagaccaggctggcctcgaactcagagatccacctgcctctgcc
tccccagtgctgggatcaaaggcgtgcgccaccacacccggctcaagcca
ggtaattttaaaggtggctatgtgtagtctttgtattttgttttgagatg
gtgtcttagtgtatagtcaagagcagcctgagtatatactcagtctccca
cgtggaggactgaccctggccttatatatagtcttatataggagtcagta
tagaagagagaagctaggaggttaggaactaagtctatgctcttctcatt
taggcaaaacccttaaataaaacttacacaggtaaagtcctaagtcagca
agtacctgttagtgaaagctttaccaggttggtttctaactctgaaatct
gtctgattttgcttctgaagagttaggataaaggcatgggccactagatc
taggtcggtagtaaatactttggctagcctagaacttgtgacagtccagc
ttctgtttccaagtgtagtagtcagagcatgttctcaggcatgtttattt
gtggtagagtttcatgcgatgataataagttgttgttgacttttttttta
ttaatagctcagcaaagatccaaatattgtcatagccaagatggatgcca
cagccaatgatgtgccttctccatatgaagtcaaggggtaagttgattag
aggggcgggggcaagggggggttgagatgg
gaattctttcctggagtctgatgttgtctgcagtgcacttcagtggctgc
ccccgagcccagtctgtccacttggcatcttattggcttgcagtggatgt
tttcctaagcatctctgacaaactaaaaagcacatgcctgagaacaacgt
gagagatacttctggggagggacatgccccagggagcagctcagcaatac
atctctttgctaaggcagcagcttctcttgtcctgagctgatggccacct
ttggcccatacaggtgatgctgagcaggatatgcaggtgtgaaagaaggc
taagaacagctcttggggtgtgcgggaaggttgtgcagagcctcctgtta
atctgcctccatggttccctaggctggggtatttggagctggttaccagc
taatgtctgctctccataatttaaaactttttatttgaaaagtatccccc
accccccaaaaaagctgaagagatggcttgacagtttaaggtatatactg
cccagggagaatatgtaaaaggcctgctatcatgacttaaaccaaaacaa
ctgaagagccatcccaggtccagggttcttcagggtacagccaagtcaat
ggaagggttatgtttagcatctccctctggtccgtcagcttccttccttt
tcttccatggccattgatcccaggaacaattctgccttgctaaactctta
tctcagagtctctttccaaagcaaccagagctgtaacataacagtgccgg
tgtatagtgccaggttaccattaaccacctgttgatctgagatggcatga
cacttagagatcccgtaaactttagtcagatatcaggaatatgcttgaga
aagttggacaaaatgttagataatagagaaatccccagatacatgtgcaa
cttgcccattaaaggacatttgactgcttcctgggtttcagacatcctag
tgccgatctgcatgagtctaggagcacagaagtgggttttgccattcctc
tgaaaaaggctgcccttttaatatagtattaataagcaatgtaagtgatt
agtcttttcatatcgagcctttaatccttctcagtgctagggccagtaga
ggctttcttgaggcaaactgtctgcctgttgatagtggtagcagaagcag
aaattctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121260901_121261778
seq2: B6Ng01-226P12.b_45_924

seq1  GAATTCATAAGCCATCATTTTAAAATGCTTGGGAGTTTTGCACTTATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGCCATCATTTTAAAATGCTTGGGAGTTTTGCACTTATAAT  50

seq1  CCAAGCCAGTTTTTTGTTTTTGTTTTTTTGTTTTGTTTTGTTTTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCAGTTTTTTGTTTTTGTTTTTTTGTTTTGTTTTGTTTTGTTTTT  100

seq1  TGTTTTTCGAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCGAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  150

seq1  ACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCCTCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCCTCTGCC  200

seq1  TCCCCAGTGCTGGGATCAAAGGCGTGCGCCACCACACCCGGCTCAAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGTGCTGGGATCAAAGGCGTGCGCCACCACACCCGGCTCAAGCCA  250

seq1  GGTAATTTTAAAGGTGGCTATGTGTAGTCTTTGTATTTTGTTTTGAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTTTAAAGGTGGCTATGTGTAGTCTTTGTATTTTGTTTTGAGATG  300

seq1  GTGTCTTAGTGTATAGTCAAGAGCAGCCTGAGTATATACTCAGTCTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTAGTGTATAGTCAAGAGCAGCCTGAGTATATACTCAGTCTCCCA  350

seq1  CGTGGAGGACTGACCCTGGCCTTATATATAGTCTTATATAGGAGTCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAGGACTGACCCTGGCCTTATATATAGTCTTATATAGGAGTCAGTA  400

seq1  TAGAAGAGAGAAGCTAGGAGGTTAGGAACTAAGTCTATGCTCTTCTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGAGAAGCTAGGAGGTTAGGAACTAAGTCTATGCTCTTCTCATT  450

seq1  TAGGCAAAACCCTTAAATAAAACTTACACAGGTAAAGTCCTAAGTCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAAACCCTTAAATAAAACTTACACAGGTAAAGTCCTAAGTCAGCA  500

seq1  AGTACCTGTTAGTGAAAGCTTTACCAGGTTGGTTTCTAACTCTGAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTGTTAGTGAAAGCTTTACCAGGTTGGTTTCTAACTCTGAAATCT  550

seq1  GTCTGATTTTGCTTCTGAAGAGTTAGGATAAAGGCATGGGCCACTAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTTTGCTTCTGAAGAGTTAGGATAAAGGCATGGGCCACTAGATC  600

seq1  TAGGTCGGTAGTAAATACTTTGGCTAGCCTAGAACTTGTGACAGTCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCGGTAGTAAATACTTTGGCTAGCCTAGAACTTGTGACAGTCCAGC  650

seq1  TTCTGTTTCCAAGTGTAGTAGTCAGAGCATGTTCTCAGGCATGTTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCCAAGTGTAGTAGTCAGAGCATGTTCTCAGGCATGTTTATTT  700

seq1  GTGGTAGAGTTTCATGCGATGATAATAAGTTGTTGTTGAC-TTTTTTTTA  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGGTAGAGTTTCATGCGATGATAATAAGTTGTTGTTGACTTTTTTTTTA  750

seq1  TTAATAGCTCAGCAAAGATCCAAATATTGTCATAGCCAAGATGGATGCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGCTCAGCAAAGATCCAAATATTGTCATAGCCAAGATGGATGCCA  800

seq1  CAGCCAATGATGTGCCTTCTCCATATGAAGTCAAGGGGTAAGTTGATTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAATGATGTGCCTTCTCCATATGAAGTCAAGGGGTAAGTTGATTAG  850

seq1  AGGGGCGGGGGCAA-GGGGGGTTGAGATGG  878
      |||||||||||||| |||||||||||||||
seq2  AGGGGCGGGGGCAAGGGGGGGTTGAGATGG  880

seq1: chr2_121425305_121426480
seq2: B6Ng01-226P12.g_67_1226 (reverse)

seq1  TCCAGAATATCTGCTTCTGCTACCAACATACAGACACAGGCAAGAACAGT  50
      |||||||| ||||||||||||||||  || ||   |||||||   |||||
seq2  TCCAGAATTTCTGCTTCTGCTACCACTAT-CA---ACAGGCA--GACAGT  44

seq1  TCTGCACTCAAGAAAGCCTCTAACTGGGCCCTAGCCACTGAGAAGGAATT  100
      | ||| ||||||||||||||| ||| |||||||| ||||||||||| |||
seq2  T-TGC-CTCAAGAAAGCCTCT-ACT-GGCCCTAG-CACTGAGAAGG-ATT  88

seq1  AAAAGCTCGATATTGGAAAAGACTAATCAC-TACATTTGCTTAATTATAC  149
      ||| |||||||||  ||||||||||||||| |||| ||||||| | ||||
seq2  AAAGGCTCGATAT--GAAAAGACTAATCACTTACA-TTGCTTATTAATAC  135

seq1  TAATATAAAAGGGCAAGCCTTTTTCAGAGGAATGGCAAAACCCACTTCTG  199
      ||   ||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATATTAAAAGGGC-AGCCTTTTTCAGAGGAATGGCAAAACCCACTTCTG  184

seq1  TGCTCCTAGACTCATGCAGATCGGCACTAGGATGTCTGAAACCCCAGGAA  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCTCCTAGACTCATGCAGATCGGCACTAGGATGTCTGAAA-CCCAGGAA  233

seq1  GCAGTCAAATGTCCTTTAATGGGCAAGTTGCACATGTATCTGGGGATTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAAATGTCCTTTAATGGGCAAGTTGCACATGTATCTGGGGATTTC  283

seq1  TCTATTATCTAACATTTTGTCCAACTTTCTCAAGCATATTCCTGATATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATCTAACATTTTGTCCAACTTTCTCAAGCATATTCCTGATATCT  333

seq1  GACTAAAGTTTACGGGATCTCTAAGTGTCATGCCATCTCAGATCAACAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGTTTACGGGATCTCTAAGTGTCATGCCATCTCAGATCAACAGG  383

seq1  TGGTTAATGGTAACCTGGCACTATACACCGGCACTGTTATGTTACAGCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAATGGTAACCTGGCACTATACACCGGCACTGTTATGTTACAGCTC  433

seq1  TGGTTGCTTTGGAAAGAGACTCTGAGATAAGAGTTTAGCAAGGCAGAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTTTGGAAAGAGACTCTGAGATAAGAGTTTAGCAAGGCAGAATT  483

seq1  GTTCCTGGGATCAATGGCCATGGAAGAAAAGGAAGGAAGCTGACGGACCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGGATCAATGGCCATGGAAGAAAAGGAAGGAAGCTGACGGACCA  533

seq1  GAGGGAGATGCTAAACATAACCCTTCCATTGACTTGGCTGTACCCTGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGATGCTAAACATAACCCTTCCATTGACTTGGCTGTACCCTGAAG  583

seq1  AACCCTGGACCTGGGATGGCTCTTCAGTTGTTTTGGTTTAAGTCATGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGACCTGGGATGGCTCTTCAGTTGTTTTGGTTTAAGTCATGATA  633

seq1  GCAGGCCTTTTACATATTCTCCCTGGGCAGTATATACCTTAAACTGTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCTTTTACATATTCTCCCTGGGCAGTATATACCTTAAACTGTCAA  683

seq1  GCCATCTCTTCAGCTTTTTTGGGGGGTGGGGGATACTTTTCAAATAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTTCAGCTTTTTTGGGGGGTGGGGGATACTTTTCAAATAAAAA  733

seq1  GTTTTAAATTATGGAGAGCAGACATTAGCTGGTAACCAGCTCCAAATACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATTATGGAGAGCAGACATTAGCTGGTAACCAGCTCCAAATACC  783

seq1  CCAGCCTAGGGAACCATGGAGGCAGATTAACAGGAGGCTCTGCACAACCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAGGGAACCATGGAGGCAGATTAACAGGAGGCTCTGCACAACCT  833

seq1  TCCCGCACACCCCAAGAGCTGTTCTTAGCCTTCTTTCACACCTGCATATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCACACCCCAAGAGCTGTTCTTAGCCTTCTTTCACACCTGCATATC  883

seq1  CTGCTCAGCATCACCTGTATGGGCCAAAGGTGGCCATCAGCTCAGGACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGCATCACCTGTATGGGCCAAAGGTGGCCATCAGCTCAGGACAA  933

seq1  GAGAAGCTGCTGCCTTAGCAAAGAGATGTATTGCTGAGCTGCTCCCTGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTGCTGCCTTAGCAAAGAGATGTATTGCTGAGCTGCTCCCTGGG  983

seq1  GCATGTCCCTCCCCAGAAGTATCTCTCACGTTGTTCTCAGGCATGTGCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCCCTCCCCAGAAGTATCTCTCACGTTGTTCTCAGGCATGTGCTT  1033

seq1  TTTAGTTTGTCAGAGATGCTTAGGAAAACATCCACTGCAAGCCAATAAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTGTCAGAGATGCTTAGGAAAACATCCACTGCAAGCCAATAAGA  1083

seq1  TGCCAAGTGGACAGACTGGGCTCGGGGGCAGCCACTGAAGTGCACTGCAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTGGACAGACTGGGCTCGGGGGCAGCCACTGAAGTGCACTGCAG  1133

seq1  ACAACATCAGACTCCAGGAAAGAATTC  1176
      |||||||||||||||||||||||||||
seq2  ACAACATCAGACTCCAGGAAAGAATTC  1160