BAC Information

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BAC

Clone NameB6Ng01-227E16
Chromosome2 (Build37)
Map Location 100,289,357 - 100,430,828
singlet/doubletdoublet
Overlap geneLOC241572
Upstream geneLOC621386, LOC668702, LOC100042907
Downstream geneLOC668705, B230118H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227E16.bB6Ng01-227E16.g
ACCGA041000GA041001
length1,1821,177
definitionB6Ng01-227E16.b B6Ng01-227E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,289,357 - 100,290,537)(100,429,674 - 100,430,828)
sequence
gaattcttgtcctttttggaagagaaatggagaagaagtgaatgagatgt
agagaggagatgtggggatgaccattgagaggagaagatggaggggaacc
tgcatgagtatatgagagaagaacactgtaaaaatgaaatggcatagaag
gagtatttgtattcccccacattcgtagtaatgttaaaatcacacaattt
atctgtactgtataattttatggtcaaaaagttatttgtaccatagaaat
agtaattataaaatattattttaacagaaaactttctttgattctgatta
tatacatattttcttggaaacagaacctttaagttcaaacatattttatg
atgagagcagatctataaaatgaatgccttaacacatatatttaagtaac
acatttgatagaatctctgcatgttatagaatgaaaaaattataatggcc
atttttgtttccctacaaaatatttagggactgttatttataacgttagc
atttagaatgcaaatgttccctgaaactttttgctctaatgaattttacc
aaaatactgtcatttaattaaaaaattcaaagtaagaaaaagtgaaattc
ataaatagtataacttttattatcacaaactgctagtttcaagacatagg
aaggtgctgacttaatagaaacagatttcaatcttcctttaaccactgac
taagaagaatttatgacctctgtcatcatactcataacttgggggtcaag
atgatttttatagtcagttgtcaacattagtcagaaatagaataattaaa
atggaaaaaagtcacattgcaatgacagtataactcttatttttccatag
acatacatagataactttatatttctgaatctttatattttgatttgtaa
agaaaattaattagacatatatttttcattcactgaattattaaagtacc
aatttcatgactgagtgtttattaatgtatttcaaccatgtcacattgca
tatcattctatagtcatcataattttaaacttgctgatcacaagcatctc
taacttccacactggattataccttattaataaactaatctaaatgtatg
ccttctgggcatctttgtaagtagaacaggttcgagaaaggctaagcaga
agaaaaaaaagcagcttgaatatgccatgcat
gaattccaagctcagggtctgcttcaagaattttctaggaatccttggaa
cacttataataaaacaatactgaaacagagcacatggatccaaacaccaa
acaggttttgagtattcgggctatgggaatgtcaaggttccaggaggctg
tttctatgcaactctgcctcctgtctgcttccaggctattaggcctacca
agcagactgcactggagtggatgtagcataatgagttgaactgcatgtcc
tcatcgaatagatcaaagtacaatgatgactttgaaacattaactgtttc
atagacatgctttgtttgggaaaaagatgtaggagctagccagaaatagg
aacacctgtttttctgcgttctcttttcaactcttttgagttggaatctt
gaaataagtcacagtaattaagttcacgggagctggtgaacattgggcaa
aaaattcacaggtgtggcaaacctctgagccaacctcttccagggatgag
gtaccagcaggaacacctgggtgtgcatagaagccaattgtctgccaaaa
tcagggctatgaaatgagaggaagaaggggtagcatggcaaaccataggc
acttctgaaaactgaaagggggaaatcaagaaagaagaatccaactctgg
agctacaggttggagcaaatgtgcttaaaaggtacaagcttattattatt
ttcttttttacagattcatgcatgtgtatttatttatatatttccattca
aaacagctggcctagcttacatacattctcataatcacattgttacacac
acacacacattcatacttacatgtacatttggagcaaatgtccaagcatc
agtgcagaaagaacccactcattctggatgaaaaatgaacctacaatcct
ttattgtgtagagaaagaaaagctttctacttcttttattgcctaaatga
attaaatctcaagaagaaagtcctttgcttgtctatagtaagtctaaagc
ctgcccttcttattaaagaaaaaaacctgttaatgtcccataggtaagga
gggatatgcctcatagactttcctattcgaatttttggatttgaatttag
tggtaacttggggggcgaacctttttactatgtggccagtattcctgaag
atgttaagtgtctaaaggtcacaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100289357_100290537
seq2: B6Ng01-227E16.b_47_1228

seq1  GAATTCTTGTCCTTTTTGGAAGAGAAATGGAGAAGAAGTGAATGAGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCCTTTTTGGAAGAGAAATGGAGAAGAAGTGAATGAGATGT  50

seq1  AGAGAGGAGATGTGGGGATGACCATTGAGAGGAGAAGATGGAGGGGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGATGTGGGGATGACCATTGAGAGGAGAAGATGGAGGGGAACC  100

seq1  TGCATGAGTATATGAGAGAAGAACACTGTAAAAATGAAATGGCATAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAGTATATGAGAGAAGAACACTGTAAAAATGAAATGGCATAGAAG  150

seq1  GAGTATTTGTATTCCCCCACATTCGTAGTAATGTTAAAATCACACAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTGTATTCCCCCACATTCGTAGTAATGTTAAAATCACACAATTT  200

seq1  ATCTGTACTGTATAATTTTATGGTCAAAAAGTTATTTGTACCATAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACTGTATAATTTTATGGTCAAAAAGTTATTTGTACCATAGAAAT  250

seq1  AGTAATTATAAAATATTATTTTAACAGAAAACTTTCTTTGATTCTGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTATAAAATATTATTTTAACAGAAAACTTTCTTTGATTCTGATTA  300

seq1  TATACATATTTTCTTGGAAACAGAACCTTTAAGTTCAAACATATTTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATTTTCTTGGAAACAGAACCTTTAAGTTCAAACATATTTTATG  350

seq1  ATGAGAGCAGATCTATAAAATGAATGCCTTAACACATATATTTAAGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGCAGATCTATAAAATGAATGCCTTAACACATATATTTAAGTAAC  400

seq1  ACATTTGATAGAATCTCTGCATGTTATAGAATGAAAAAATTATAATGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGATAGAATCTCTGCATGTTATAGAATGAAAAAATTATAATGGCC  450

seq1  ATTTTTGTTTCCCTACAAAATATTTAGGGACTGTTATTTATAACGTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTCCCTACAAAATATTTAGGGACTGTTATTTATAACGTTAGC  500

seq1  ATTTAGAATGCAAATGTTCCCTGAAACTTTTTGCTCTAATGAATTTTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATGCAAATGTTCCCTGAAACTTTTTGCTCTAATGAATTTTACC  550

seq1  AAAATACTGTCATTTAATTAAAAAATTCAAAGTAAGAAAAAGTGAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTGTCATTTAATTAAAAAATTCAAAGTAAGAAAAAGTGAAATTC  600

seq1  ATAAATAGTATAACTTTTATTATCACAAACTGCTAGTTTCAAGACATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGTATAACTTTTATTATCACAAACTGCTAGTTTCAAGACATAGG  650

seq1  AAGGTGCTGACTTAATAGAAACAGATTTCAATCTTCCTTTAACCACTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTGACTTAATAGAAACAGATTTCAATCTTCCTTTAACCACTGAC  700

seq1  TAAGAAGAATTTATGACCTCTGTCATCATACTCATAACTTGGGGGTCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGAATTTATGACCTCTGTCATCATACTCATAACTTGGGGGTCAAG  750

seq1  ATGATTTTTATAGTCAGTTGTCAACATTAGTCAGAAATAGAATAATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTATAGTCAGTTGTCAACATTAGTCAGAAATAGAATAATTAAA  800

seq1  ATGGAAAAAAGTCACATTGCAATGACAGTATAACTCTTATTTTTCCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAAAGTCACATTGCAATGACAGTATAACTCTTATTTTTCCATAG  850

seq1  ACATACATAGATAACTTTATATTTCTGAATCTTTATATTTTGATTTGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATAGATAACTTTATATTTCTGAATCTTTATATTTTGATTTGTAA  900

seq1  AGAAAATTAATTAGACATATATTTTTCATTCACTGAATTATTAAAGTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTAATTAGACATATATTTTTCATTCACTGAATTATTAAAGTACC  950

seq1  AA-TTCATGACTGAGGTGTTTATTAATGTATTTCAACCATGTCACATTGC  999
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATTTCATGACTGA-GTGTTTATTAATGTATTTCAACCATGTCACATTGC  999

seq1  ATATCATTCTATAGTCATCATAATTTTTAAACTTGCTGATCAACAAAGCA  1049
      ||||||||||||||||||||||| ||||||||||||||||||   |||||
seq2  ATATCATTCTATAGTCATCATAA-TTTTAAACTTGCTGATCA--CAAGCA  1046

seq1  TCTCTAAACTTCCAACACTGGATTAATAACCTTATTAATAAACTAATCTA  1099
      ||||| ||||||| |||||||||||   ||||||||||||||||||||||
seq2  TCTCT-AACTTCC-ACACTGGATTA--TACCTTATTAATAAACTAATCTA  1092

seq1  AATGTATGCC-TCTGGGCATCTTGTAAAGTAG-ACAGTTTTGAGAAA-GC  1146
      |||||||||| ||||||||||||   |||||| |||| || |||||| ||
seq2  AATGTATGCCTTCTGGGCATCTTTGTAAGTAGAACAGGTTCGAGAAAGGC  1142

seq1  T-AGCAGAAG-AAAAAAAGCAGCTCTGAATA----ATGCAT  1181
      | |||||||| ||||||||||||| ||||||    ||||||
seq2  TAAGCAGAAGAAAAAAAAGCAGCT-TGAATATGCCATGCAT  1182

seq1: chr2_100429674_100430828
seq2: B6Ng01-227E16.g_67_1243 (reverse)

seq1  TCTTTGT---CCTTAG-CACTTATACATCTTTCAGG-ATACATGACCACA  45
      |||||||   | |||| |||||| ||||| |||||| |||| || |||||
seq2  TCTTTGTGACCTTTAGACACTTA-ACATC-TTCAGGAATAC-TGGCCACA  47

seq1  TAGTAAAAAGTT---CACCACAAGTTTACACATAAATTCAAAT-CAAAAA  91
      |||||||||| |   | || ||||||  ||| ||||||||||| ||||||
seq2  TAGTAAAAAGGTTCGCCCCCCAAGTTACCAC-TAAATTCAAATCCAAAAA  96

seq1  TCGAAATAG--AAGTCTATGA-GCATATCCCTCCTTA-CTATGGGACA-T  136
      |   |||||  |||||||||| ||||||||||||||| |||||||||| |
seq2  TTCGAATAGGAAAGTCTATGAGGCATATCCCTCCTTACCTATGGGACATT  146

seq1  AACAGGTTTTTT--CTTAATAAGAA-GGCAGGC-TTAGACTTACTATAGA  182
      ||||||||||||   |||||||||| ||||||| ||||||||||||||||
seq2  AACAGGTTTTTTTCTTTAATAAGAAGGGCAGGCTTTAGACTTACTATAGA  196

seq1  C-AGCAAAG--CTTTCTTCTTG-GGTTTAATTCATTTA-GCAATAAAAG-  226
      | |||||||  ||||||||||| | ||||||||||||| |||||||||| 
seq2  CAAGCAAAGGACTTTCTTCTTGAGATTTAATTCATTTAGGCAATAAAAGA  246

seq1  AGTAGAAGCTTTTTCTTTCTCTACACAATAAA-GATTGTA-GTTCATTTT  274
      |||||||   |||||||||||||||||||||| ||||||| |||||||||
seq2  AGTAGAAAGCTTTTCTTTCTCTACACAATAAAGGATTGTAGGTTCATTTT  296

seq1  TCATCCAGAATGAGTGGGTTCTTTCTGCACTGATGCTTGGACATTTGCTC  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGAATGAGTGGGTTCTTTCTGCACTGATGCTTGGACATTTGCTC  346

seq1  CAAATGTACATGTAAGTATGAATGTGTGTGTGTGTGTAACAATGTGATTA  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTACATGTAAGTATGAATGTGTGTGTGTGTGTAACAATGTGATTA  396

seq1  TGAGAATGTATGTAAGCTAGGCCAGCTGTTTTGAATGGAAATATATAAAT  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGTATGTAAGCTAGGCCAGCTGTTTTGAATGGAAATATATAAAT  446

seq1  AAATACACATGCATGAATCTGTAAAAAAGAAAATAATAATAAGCTTGTAC  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACATGCATGAATCTGTAAAAAAGAAAATAATAATAAGCTTGTAC  496

seq1  CTTTTAAGCACATTTGCTCCAACCTGTAGCTCCAGAGTTGGATTCTTCTT  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGCACATTTGCTCCAACCTGTAGCTCCAGAGTTGGATTCTTCTT  546

seq1  TCTTGATTTCCCCCTTTCAGTTTTCAGAAGTGCCTATGGTTTGCCATGCT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTTCCCCCTTTCAGTTTTCAGAAGTGCCTATGGTTTGCCATGCT  596

seq1  ACCCCTTCTTCCTCTCATTTCATAGCCCTGATTTTGGCAGACAATTGGCT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTCTTCCTCTCATTTCATAGCCCTGATTTTGGCAGACAATTGGCT  646

seq1  TCTATGCACACCCAGGTGTTCCTGCTGGTACCTCATCCCTGGAAGAGGTT  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCACACCCAGGTGTTCCTGCTGGTACCTCATCCCTGGAAGAGGTT  696

seq1  GGCTCAGAGGTTTGCCACACCTGTGAATTTTTTGCCCAATGTTCACCAGC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGGTTTGCCACACCTGTGAATTTTTTGCCCAATGTTCACCAGC  746

seq1  TCCCGTGAACTTAATTACTGTGACTTATTTCAAGATTCCAACTCAAAAGA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGAACTTAATTACTGTGACTTATTTCAAGATTCCAACTCAAAAGA  796

seq1  GTTGAAAAGAGAACGCAGAAAAACAGGTGTTCCTATTTCTGGCTAGCTCC  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAAGAGAACGCAGAAAAACAGGTGTTCCTATTTCTGGCTAGCTCC  846

seq1  TACATCTTTTTCCCAAACAAAGCATGTCTATGAAACAGTTAATGTTTCAA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTTTTCCCAAACAAAGCATGTCTATGAAACAGTTAATGTTTCAA  896

seq1  AGTCATCATTGTACTTTGATCTATTCGATGAGGACATGCAGTTCAACTCA  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCATTGTACTTTGATCTATTCGATGAGGACATGCAGTTCAACTCA  946

seq1  TTATGCTACATCCACTCCAGTGCAGTCTGCTTGGTAGGCCTAATAGCCTG  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTACATCCACTCCAGTGCAGTCTGCTTGGTAGGCCTAATAGCCTG  996

seq1  GAAGCAGACAGGAGGCAGAGTTGCATAGAAACAGCCTCCTGGAACCTTGA  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGACAGGAGGCAGAGTTGCATAGAAACAGCCTCCTGGAACCTTGA  1046

seq1  CATTCCCATAGCCCGAATACTCAAAACCTGTTTGGTGTTTGGATCCATGT  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCATAGCCCGAATACTCAAAACCTGTTTGGTGTTTGGATCCATGT  1096

seq1  GCTCTGTTTCAGTATTGTTTTATTATAAGTGTTCCAAGGATTCCTAGAAA  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTTCAGTATTGTTTTATTATAAGTGTTCCAAGGATTCCTAGAAA  1146

seq1  ATTCTTGAAGCAGACCCTGAGCTTGGAATTC  1155
      |||||||||||||||||||||||||||||||
seq2  ATTCTTGAAGCAGACCCTGAGCTTGGAATTC  1177