BAC Information

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BAC

Clone NameB6Ng01-227F23
Chromosome2 (Build37)16 (Build37)
Map Location 143,552,988 - 143,553,41985,104,125 - 85,104,936
singlet/doubletsingletsinglet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227F23.bB6Ng01-227F23.g
ACCGA041060GA041061
length828807
definitionB6Ng01-227F23.b B6Ng01-227F23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(143,552,988 - 143,553,419)(85,104,125 - 85,104,936)
sequence
gaattctctgtttagctctgttctccatttttataggattatttggttct
ctggagtttaacttcttgagttctttgtatataatggatattagtcctct
ggagagaagtctggtgtaattctgataggtctgcctttatatgttacttg
atcttttcccttactgcttttaatattctttctttgttttgtgcatttga
tgttttgactattgtgatgggaggaatttcttttcttgtccagtctgttt
ggagttctgtaggcttcttgtatattcatgggcatctctttcattgggtt
agggaagttttttttctatagttttgttgaagatatttactggcccttta
agttgggaatcttcactctcttctttacctattatccttaggtttgatct
cattttttcctggatctcctgggtgtttcaggttaggatctttttacatt
ttgcattttctttgactgttgtatcaatgttttctatggtatcttctgca
cctgagattctctcttctaactcttgtattctgttggtaatacttgcatt
gttgtaacccctgaattactgatactagagaaacttcggtgtggtgtaca
cacagtttgcctctgcattccctgacttcacacacacacacacacacaca
cacacacacacacacaccctcccagaagctcccatcctccctccagcacg
tggcaagcatgatatgcatacagctggtttcctgtgctgcttcctcctgc
agcatcccagggctccctccctctcccctagtgttagaatggcactaccc
ataaaactcccctttaatgagaacattc
gaattctcctccttcagtaataaactacttatctctgtctgtgatgactg
ctgctcatgaatcatgctgtttgctgatcacttggaacgaaatgtcaaac
tcaatcaaccaaaatgtatttgtgaaatatcaaaccacttctatgtaata
ataataatgggttagagatttgaaagaagaatagcaatacacaatatggc
tctaaagtgagccattttgcgagataaataaccagggaaatagtttacta
aaggctgtaaggaagcagatagtttaactggaggtgatgaatccaggagg
tgaaggtgagaacatgaagggaattggacacagtcaaaaggttgtaagac
aacaggattcgaattctggaatgggctaaagggtttggtgtagacatatt
atagaaagtgagccaggaaggactagtgcttgggagagtttgggaattaa
aattaggaatctgagaaagtcccaattattggtaatcgcaaggaatataa
atatggccatcaaagggagtagataattaaaacaaaacaaaaagaagcca
atgtccctgaaggattcatgatgtgggtttgagaaacggaagtaccagag
gtatcactgactcctcccagataactacagcctacaaaagggttgtaatg
gatgacaggaagccagaagcagaagacttcaaagattgaaggtgcgtacc
acaggctagtagggctcagggtcaactccatccatagacaacaaagacag
tctaggctgaaagcactagagttcatagacaggtttaagggttttggggg
gaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143552988_143553419
seq2: B6Ng01-227F23.b_157_583 (reverse)

seq1  CAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCA  50
      |||||||||||||||| | ||||||||||||||||||||||||||| |||
seq2  CAACAGAATACAAGAGTTAGAAGAGAGAATCTCAGGTGCAGAAGATACCA  50

seq1  TAGAGAACATTGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATC  100
      |||| |||||||  |||||| |||||||||||| |||||| |||||||||
seq2  TAGAAAACATTGATACAACAGTCAAAGAAAATGCAAAATGTAAAAAGATC  100

seq1  CTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGT  150
      |||||   ||| | |||||| ||||||||   || ||  ||| ||||| |
seq2  CTAACCTGAAACACCCAGGAGATCCAGGA---AAAAATGAGATCAAACCT  147

seq1  ACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAG  200
      | ||||||||||    || |||| ||||||||  ||||| ||||| ||||
seq2  AAGGATAATAGGTAAAGAAGAGAGTGAAGATTCCCAACTTAAAGGGCCAG  197

seq1  CAAACATCTTCAACAAAATTATTG-AAGAAAACTTCCCAAATCTAAAGAA  249
       ||| ||||||||||||| ||| | || |||||||||| || | || |||
seq2  TAAATATCTTCAACAAAACTATAGAAAAAAAACTTCCCTAACCCAATGAA  247

seq1  TGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGG  299
       |||||||  ||||| |||||||||||||||||||||||||| |||||||
seq2  AGAGATGCCCATGAATATACAAGAAGCCTACAGAACTCCAAACAGACTGG  297

seq1  ACCAGAAAAGAAATTCCTCCCGACATATAATAATCAGAACATCAAATGCA  349
      || ||||||||||||||||||  |  | |||| ||| |||||||||||||
seq2  ACAAGAAAAGAAATTCCTCCCATC--ACAATAGTCAAAACATCAAATGCA  345

seq1  CTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAAC  399
      | ||| ||||| |||||| ||||||||||||||| ||||| |||||||||
seq2  CAAAACAAAGAAAGAATATTAAAAGCAGTAAGGG-AAAAGATCAAGTAAC  394

seq1  ATATAAAGGCAAGCCTATCAGAATTACACCAGA  432
      |||||||||||  ||||||||||||||||||||
seq2  ATATAAAGGCAGACCTATCAGAATTACACCAGA  427

seq1: chr16_85104125_85104936
seq2: B6Ng01-227F23.g_67_873

seq1  GAATTCTCCTCCTTCAGTAATAAACTACTTATCTCTGTCTGTGATGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCTTCAGTAATAAACTACTTATCTCTGTCTGTGATGACTG  50

seq1  CTGCTCATGAATCATGCTGTTTGCTGATCACTTGGAACGAAATGTCAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATGAATCATGCTGTTTGCTGATCACTTGGAACGAAATGTCAAAC  100

seq1  TCAATCAACCAAAATGTATTTGTGAAATATCAAACCACTTCTATGTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAACCAAAATGTATTTGTGAAATATCAAACCACTTCTATGTAATA  150

seq1  ATAATAATGGGTTAGAGATTTGAAAGAAGAATAGCAATACACAATATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATGGGTTAGAGATTTGAAAGAAGAATAGCAATACACAATATGGC  200

seq1  TCTAAAGTGAGCCATTTTGCGAGATAAATAACCAGGGAAATAGTTTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTGAGCCATTTTGCGAGATAAATAACCAGGGAAATAGTTTACTA  250

seq1  AAGGCTGTAAGGAAGCAGATAGTTTAACTGGAGGTGATGAATCCAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTAAGGAAGCAGATAGTTTAACTGGAGGTGATGAATCCAGGAGG  300

seq1  TGAAGGTGAGAACATGAAGGGAATTGGACACAGTCAAAAGGTTGTAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGAGAACATGAAGGGAATTGGACACAGTCAAAAGGTTGTAAGAC  350

seq1  AACAGGATTCGAATTCTGGAATGGGCTAAAGGGTTTGGTGTAGACATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATTCGAATTCTGGAATGGGCTAAAGGGTTTGGTGTAGACATATT  400

seq1  ATAGAAAGTGAGCCAGGAAGGACTAGTGCTTGGGAGAGTTTGGGAATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGTGAGCCAGGAAGGACTAGTGCTTGGGAGAGTTTGGGAATTAA  450

seq1  AATTAGGAATCTGAGAAAGTCCCAATTATTGGTAATCGCAAGGAATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGAATCTGAGAAAGTCCCAATTATTGGTAATCGCAAGGAATATAA  500

seq1  ATATGGCCATCAAAGGGAGTAGATAATTAAAACAAAACAAAAAGAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCCATCAAAGGGAGTAGATAATTAAAACAAAACAAAAAGAAGCCA  550

seq1  ATGTCCCTGAAGGATTCATGATGTGGGTTTGAGAAACGGAAGTACCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTGAAGGATTCATGATGTGGGTTTGAGAAACGGAAGTACCAGAG  600

seq1  GTATCACTGACTCCTCCCAGATAACTACAGCCTACAAAAGGGTTGTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTGACTCCTCCCAGATAACTACAGCCTACAAAAGGGTTGTAATG  650

seq1  GATGACAGGAAGCCAGAAGCAGAAGACTTCAAAGATTGAAGGTGCGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGGAAGCCAGAAGCAGAAGACTTCAAAGATTGAAGGTGCGTACC  700

seq1  ACAGGCTAGTAGGGCTCAGGGTCAACTCCATCCATAGACAACAAAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAGTAGGGCTCAGGGTCAACTCCATCCATAGACAACAAAGACAG  750

seq1  TCTAGGCTGAAAGCACTAGAGTTCATAGACAGGTTTAAGGGTTTTGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTGAAAGCACTAGAGTTCATAGACAGGTTTAAGGGTTTTGGGGG  800

seq1  GAGGGGGAGGGG  812
      ||     |||||
seq2  GA-----AGGGG  807